Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99741 * 2 1 4 4 C 1.53002 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47507 * 305.00359 * 4 3 2 6 6 C 1.53005 * 109.46888 * 65.00216 * 4 3 2 7 7 C 1.53001 * 109.47323 * 184.99908 * 4 3 2 8 8 C 1.50706 * 109.46848 * 175.00120 * 7 4 3 9 9 N 1.29946 * 126.28426 * 270.02363 * 8 7 4 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 7 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99856 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46945 * 90.00078 * 20 18 16 22 22 H 1.48497 * 109.47479 * 210.00219 * 20 18 16 23 23 H 1.48504 * 109.47204 * 330.00549 * 20 18 16 24 24 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47066 * 299.99336 * 1 2 3 27 27 H 1.08994 * 109.47525 * 59.99702 * 1 2 3 28 28 H 1.09002 * 109.47567 * 60.00394 * 3 2 1 29 29 H 1.08994 * 109.47819 * 300.00017 * 3 2 1 30 30 H 1.09000 * 109.46820 * 300.00233 * 6 4 3 31 31 H 1.09003 * 109.46930 * 59.99790 * 6 4 3 32 32 H 1.09000 * 109.46989 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46965 * 55.00315 * 7 4 3 34 34 H 1.08999 * 109.47236 * 295.00512 * 7 4 3 35 35 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 36 36 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 38 38 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 39 39 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 40 40 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 41 41 H 1.08998 * 109.47844 * 299.99997 * 15 14 13 42 42 H 1.09001 * 109.47248 * 60.00689 * 15 14 13 43 43 H 0.96999 * 119.99896 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1572 2.5769 0.1263 8 6 5.6537 2.4493 0.2505 9 7 6.3263 2.3303 1.3559 10 8 7.5126 2.2427 1.1181 11 6 7.7163 2.3094 -0.2010 12 6 9.0454 2.2437 -0.9084 13 6 9.6109 3.6568 -1.0636 14 6 10.9605 3.5900 -1.7812 15 6 11.5258 5.0032 -1.9370 16 6 12.8554 4.9374 -2.6433 17 1 13.2569 3.9831 -2.9506 18 6 13.5594 6.0954 -2.8970 19 7 14.7195 6.0380 -3.5138 20 14 12.8646 7.7461 -2.3660 21 1 13.3295 8.0595 -0.9909 22 1 13.3311 8.8029 -3.2991 23 1 11.3808 7.6882 -2.3856 24 7 6.5383 2.4374 -0.7626 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.5531 -0.4554 -1.3960 31 1 3.6808 1.1527 -2.1485 32 1 5.0828 0.4508 -1.3062 33 1 3.7602 3.0735 1.0117 34 1 3.9148 3.1645 -0.7592 35 1 9.7380 1.6373 -0.3247 36 1 8.9112 1.7958 -1.8930 37 1 8.9183 4.2633 -1.6473 38 1 9.7451 4.1047 -0.0789 39 1 11.6529 2.9838 -1.1973 40 1 10.8267 3.1421 -2.7658 41 1 10.8333 5.6093 -2.5212 42 1 11.6596 5.4516 -0.9525 43 1 15.2145 6.8528 -3.6926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351479646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = -34.773390 kcal Electronic energy + Delta-G solvation = -21251.729664 eV Core-core repulsion = 17912.554567 eV Total energy + Delta-G solvation = -3339.175097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.61067 -39.36760 -37.61826 -37.29747 -35.73033 -34.85059 -33.52469 -31.30170 -29.08539 -28.25818 -27.63217 -26.45081 -24.77072 -23.84579 -22.42521 -21.75859 -21.11628 -19.12271 -18.76873 -18.51030 -17.38257 -16.96992 -16.49897 -16.38985 -16.28548 -15.91067 -15.32319 -14.85455 -14.70114 -14.45008 -14.28173 -14.03139 -13.75100 -13.58436 -13.32812 -13.17353 -12.84294 -12.74471 -12.47041 -12.39357 -12.17681 -12.11498 -12.07412 -11.91464 -11.74315 -11.69778 -11.50721 -11.32221 -11.24306 -10.79615 -10.73063 -10.61644 -8.26528 -6.29685 0.11596 1.17554 1.37289 1.39033 1.50730 1.83788 2.38239 2.51068 2.87943 3.08977 3.09282 3.72062 3.81985 3.96333 4.02680 4.06221 4.11021 4.33639 4.41290 4.43617 4.49356 4.55557 4.61065 4.65511 4.67256 4.77141 4.79891 4.85107 4.86659 4.87863 4.94133 5.01257 5.14698 5.15546 5.18845 5.25873 5.30781 5.62988 5.69187 5.71859 6.22395 6.33005 6.79439 7.14280 7.35014 8.90139 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.002304 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.874427 B =12151.409418 C =12226.502359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.069 3.931 4 C -0.079 4.079 5 H 0.064 0.936 6 C -0.138 4.138 7 C -0.022 4.022 8 C 0.173 3.827 9 N -0.409 5.409 10 O 0.065 5.935 11 C 0.198 3.802 12 C -0.023 4.023 13 C -0.106 4.106 14 C -0.094 4.094 15 C -0.017 4.017 16 C -0.530 4.530 17 H 0.036 0.964 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.247 1.247 24 N -0.497 5.497 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.089 -9.743 8.744 31.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.007 4.007 4 C -0.098 4.098 5 H 0.083 0.917 6 C -0.195 4.195 7 C -0.061 4.061 8 C -0.100 4.100 9 N -0.120 5.120 10 O 0.010 5.990 11 C -0.022 4.022 12 C -0.062 4.062 13 C -0.145 4.145 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.054 0.946 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.171 1.171 24 N -0.231 5.231 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.509 -9.785 9.141 32.405 hybrid contribution 0.479 0.930 -0.053 1.047 sum -29.030 -8.855 9.088 31.682 Atomic orbital electron populations 1.22915 0.79407 1.03712 1.00978 1.87834 1.21451 1.28660 1.95640 1.22537 0.91646 0.84697 1.01839 1.20972 0.94449 0.94955 0.99461 0.91736 1.21726 1.00181 1.01033 0.96546 1.20087 0.81432 0.98439 1.06098 1.26177 1.00926 0.99485 0.83381 1.74609 0.89885 1.22651 1.24839 1.85273 1.20348 1.65701 1.27705 1.29358 0.98628 0.93399 0.80808 1.20480 0.84733 1.00031 1.00935 1.21533 0.96745 0.94731 1.01452 1.21306 0.94711 0.97156 0.99995 1.19586 0.94169 0.95909 0.95825 1.21580 1.04508 0.93666 1.37086 0.94603 1.26035 0.94979 1.03692 0.94873 1.70073 1.15569 1.29670 1.44048 0.85672 0.80175 0.78462 0.78410 1.19247 1.21209 1.17101 1.71961 0.98911 1.21346 1.30920 0.88893 0.93082 0.92992 0.91653 0.91404 0.92335 0.91608 0.94185 0.87379 0.86976 0.85699 0.85966 0.91949 0.91343 0.91923 0.92342 0.96519 0.96414 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.78 10.24 -148.98 -1.53 -8.31 16 3 C 0.07 0.88 5.32 71.98 0.38 1.26 16 4 C -0.08 -1.28 2.62 -10.79 -0.03 -1.30 16 5 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.14 -2.50 8.90 71.98 0.64 -1.86 16 7 C -0.02 -0.35 5.32 29.85 0.16 -0.20 16 8 C 0.17 4.12 6.66 138.47 0.92 5.05 16 9 N -0.41 -10.90 12.16 -60.32 -0.73 -11.63 16 10 O 0.06 1.69 11.31 74.86 0.85 2.53 16 11 C 0.20 4.77 7.77 88.38 0.69 5.46 16 12 C -0.02 -0.47 5.84 29.85 0.17 -0.30 16 13 C -0.11 -2.79 5.20 30.59 0.16 -2.63 16 14 C -0.09 -3.23 5.15 30.59 0.16 -3.07 16 15 C -0.02 -0.79 4.04 29.85 0.12 -0.66 16 16 C -0.53 -30.16 9.66 25.60 0.25 -29.91 16 17 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 18 C 0.00 0.03 5.47 84.65 0.46 0.50 16 19 N -0.95 -59.81 13.96 21.45 0.30 -59.52 16 20 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 24 N -0.50 -12.73 10.88 -303.20 -3.30 -16.03 16 25 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.86 6.84 -2.39 -0.02 0.85 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 42 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -70.49 357.58 3.72 -66.77 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.91 Total: 6.17 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 5.33 Total: -26.17 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -3.73 Total: -87.17 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.68 Total: -5.77 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -70.49 3.72 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351479646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.997 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds