Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46814 * 2 1 4 4 C 1.42907 * 113.99529 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46771 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46918 * 65.00090 * 5 4 3 7 7 C 1.42900 * 113.99927 * 179.97438 * 6 5 4 8 8 C 1.53517 * 114.17173 * 210.00269 * 7 6 5 9 9 N 1.47482 * 87.93004 * 220.14008 * 8 7 6 10 10 C 1.46900 * 110.99836 * 138.70419 * 9 8 7 11 11 C 1.52997 * 109.47171 * 169.99677 * 10 9 8 12 12 H 1.09000 * 109.47140 * 305.00052 * 11 10 9 13 13 C 1.47206 * 109.47080 * 64.99999 * 11 10 9 14 14 N 8.53758 * 81.57871 * 7.28248 * 2 1 3 15 15 C 1.53002 * 109.47415 * 185.00028 * 11 10 9 16 16 C 1.50699 * 109.47425 * 175.00239 * 15 11 10 17 17 H 1.08002 * 119.99621 * 359.97438 * 16 15 11 18 18 C 1.37872 * 120.00042 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00120 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47134 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47562 * 119.99672 * 20 18 16 23 23 H 1.48501 * 109.47008 * 239.99944 * 20 18 16 24 24 C 1.47480 * 87.83864 * 27.00918 * 9 8 7 25 25 H 1.09000 * 109.47547 * 59.99901 * 1 2 3 26 26 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47014 * 299.99642 * 1 2 3 28 28 H 1.09003 * 109.47014 * 240.00358 * 2 1 3 29 29 H 1.08992 * 109.46951 * 120.00040 * 2 1 3 30 30 H 1.08997 * 109.47061 * 60.00466 * 4 3 2 31 31 H 1.08992 * 109.47262 * 299.99998 * 4 3 2 32 32 H 1.09000 * 109.47402 * 305.00343 * 5 4 3 33 33 H 1.08999 * 109.47177 * 185.00044 * 5 4 3 34 34 H 1.09003 * 113.25543 * 342.95291 * 7 6 5 35 35 H 1.08997 * 113.47801 * 105.37253 * 8 7 6 36 36 H 1.09003 * 113.52848 * 334.91649 * 8 7 6 37 37 H 1.09001 * 109.47612 * 49.99507 * 10 9 8 38 38 H 1.08998 * 109.47323 * 289.99800 * 10 9 8 39 39 H 1.09006 * 109.46551 * 294.99831 * 15 11 10 40 40 H 1.09000 * 109.47059 * 54.99917 * 15 11 10 41 41 H 0.97003 * 120.00093 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.47460 * 87.75581 * 24 9 8 43 43 H 1.08997 * 113.47668 * 218.22348 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 8 3.3985 3.5458 1.2199 7 6 3.7202 4.9343 1.3219 8 6 3.9569 5.4209 2.7586 9 7 3.2253 6.6517 2.4053 10 6 2.3285 7.0619 3.4941 11 6 1.7792 8.4599 3.2030 12 1 2.6077 9.1491 3.0394 13 6 0.9339 8.4141 1.9987 14 7 0.2797 8.3774 1.0706 15 6 0.9453 8.9383 4.3933 16 6 0.5064 10.3610 4.1599 17 1 0.7939 10.8729 3.2534 18 6 -0.2611 11.0093 5.1040 19 7 -0.6106 10.3862 6.2081 20 14 -0.8057 12.7725 4.8143 21 1 -0.2852 13.2427 3.5053 22 1 -2.2892 12.8381 4.8099 23 1 -0.2751 13.6388 5.8975 24 6 2.5000 5.8631 1.3918 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9765 0.8891 32 1 3.3492 3.4412 -0.8429 33 1 4.9081 3.0255 -0.0912 34 1 4.4833 5.2526 0.6115 35 1 5.0078 5.5921 2.9915 36 1 3.4514 4.8162 3.5116 37 1 2.8808 7.0770 4.4337 38 1 1.5020 6.3553 3.5698 39 1 0.0680 8.3006 4.5020 40 1 1.5461 8.8878 5.3015 41 1 -1.1510 10.8422 6.8722 42 1 1.6052 5.3760 1.7794 43 1 2.3162 6.4091 0.4666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353002196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -39.200666 kcal Electronic energy + Delta-G solvation = -21600.498572 eV Core-core repulsion = 18261.131494 eV Total energy + Delta-G solvation = -3339.367078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30232 -38.48723 -37.08783 -36.01562 -33.79841 -32.28292 -31.86481 -29.59934 -28.36636 -25.99677 -25.45765 -23.06152 -22.93088 -22.42765 -21.67987 -20.03563 -17.63730 -17.15949 -16.65182 -16.45197 -16.04642 -15.90684 -15.36657 -14.88452 -14.50256 -14.42192 -14.01078 -13.47460 -13.36796 -12.87184 -12.79030 -12.68439 -12.56293 -12.31342 -12.05237 -11.80168 -11.75530 -11.55707 -11.42608 -11.17906 -11.07912 -11.01909 -10.69599 -10.62134 -10.44749 -10.20900 -9.89584 -9.55196 -9.46639 -9.18931 -8.87656 -8.43600 -6.07378 -4.10195 3.30253 3.34187 3.38255 3.39571 3.43545 3.68155 3.75229 4.16584 4.39221 4.44097 4.65454 4.74339 4.83778 4.86561 4.89041 4.97394 4.98870 5.06063 5.12015 5.25837 5.28247 5.31131 5.41487 5.49020 5.56642 5.62077 5.64369 5.66248 5.84208 5.87441 5.89351 6.07146 6.36476 6.43943 6.58590 6.90715 7.08396 7.11358 7.45881 7.56104 7.88225 8.25992 8.51481 8.94713 9.55162 11.03646 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.002819 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.786108 B = 9930.825403 C =10382.631036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.365 6.365 7 C 0.057 3.943 8 C 0.001 3.999 9 N -0.468 5.468 10 C 0.030 3.970 11 C 0.014 3.986 12 H 0.109 0.891 13 C 0.247 3.753 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.016 4.016 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.376 -20.269 -9.526 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.014 4.014 6 O -0.283 6.283 7 C -0.002 4.002 8 C -0.128 4.128 9 N -0.192 5.192 10 C -0.099 4.099 11 C -0.008 4.008 12 H 0.127 0.873 13 C -0.069 4.069 14 N -0.156 5.156 15 C -0.008 4.008 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.145 4.145 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.411 -19.618 -10.783 24.689 hybrid contribution -0.400 0.299 0.430 0.659 sum 10.011 -19.319 -10.353 24.096 Atomic orbital electron populations 1.21744 0.93641 1.02134 1.03464 1.22456 0.95838 0.83867 0.99781 1.88009 1.20410 1.26154 1.95344 1.22514 0.82346 0.95685 1.00687 1.22571 0.98177 0.92508 0.88185 1.88012 1.80358 1.22424 1.37468 1.23823 0.97412 0.80764 0.98201 1.24106 1.01248 0.91201 0.96262 1.68891 1.18093 1.22709 1.09481 1.22814 0.95644 0.96488 0.94965 1.19203 0.96056 0.96276 0.89286 0.87346 1.29177 0.92741 0.91547 0.93454 1.81005 1.11145 1.10209 1.13261 1.19187 0.94644 0.96546 0.90392 1.21184 1.32817 0.97661 1.04570 0.92441 1.24957 0.95821 0.98199 0.95067 1.69949 1.37385 1.37078 1.08678 0.86533 0.78458 0.84776 0.78304 1.19676 1.21000 1.20836 1.24469 0.97189 0.94308 0.98567 0.91841 0.91185 0.91585 0.93664 0.93428 0.92012 0.92454 0.92303 0.91671 0.88352 0.89129 0.90290 0.88838 0.92920 0.95755 0.94284 0.92872 0.90322 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.31 10.31 -40.09 -0.41 -4.72 16 4 C 0.06 0.55 6.32 37.16 0.23 0.79 16 5 C 0.06 0.57 6.16 37.16 0.23 0.80 16 6 O -0.36 -4.47 10.36 -40.09 -0.42 -4.89 16 7 C 0.06 0.66 4.65 -26.20 -0.12 0.54 16 8 C 0.00 0.01 7.52 -7.53 -0.06 -0.05 16 9 N -0.47 -6.69 6.22 -244.63 -1.52 -8.21 16 10 C 0.03 0.48 4.36 -3.83 -0.02 0.46 16 11 C 0.01 0.27 2.42 -93.40 -0.23 0.04 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 13 C 0.25 5.29 12.55 -20.75 -0.26 5.03 16 14 N -0.48 -10.93 18.54 42.16 0.78 -10.15 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 16 C -0.52 -14.24 8.60 -34.44 -0.30 -14.54 16 17 H 0.06 1.56 7.59 -52.49 -0.40 1.17 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.02 -0.23 6.32 -7.54 -0.05 -0.28 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 37 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.05 0.84 7.30 -51.93 -0.38 0.47 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -31.90 363.77 -7.98 -39.88 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.46 Total: -3.76 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.15 Total: -5.08 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.00 Total: -43.51 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.83 Total: -9.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.90 -7.98 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353002196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.675 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds