Wall clock time and date at job start Tue Mar 31 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47553 * 2 1 4 4 C 1.42894 * 114.00353 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47369 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47074 * 64.99366 * 5 4 3 7 7 C 1.42896 * 113.99668 * 179.97438 * 6 5 4 8 8 C 1.53514 * 114.16897 * 150.00147 * 7 6 5 9 9 N 1.47478 * 87.93080 * 87.62526 * 8 7 6 10 10 C 1.46905 * 111.00309 * 138.70596 * 9 8 7 11 11 C 1.52997 * 109.47325 * 170.00109 * 10 9 8 12 12 H 1.08996 * 109.46952 * 54.99956 * 11 10 9 13 13 C 1.47206 * 109.47168 * 294.99733 * 11 10 9 14 14 N 8.20567 * 97.82989 * 56.62168 * 2 1 3 15 15 C 1.53002 * 109.46817 * 175.00015 * 11 10 9 16 16 C 1.50703 * 109.46865 * 184.99692 * 15 11 10 17 17 H 1.08006 * 120.00033 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00279 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99526 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00414 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47210 * 59.99590 * 20 18 16 22 22 H 1.48494 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46677 * 299.99864 * 20 18 16 24 24 C 1.47473 * 87.83879 * 27.01138 * 9 8 7 25 25 H 1.09008 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47247 * 299.99533 * 1 2 3 27 27 H 1.08999 * 109.47185 * 59.99925 * 1 2 3 28 28 H 1.09004 * 109.46800 * 239.99957 * 2 1 3 29 29 H 1.08996 * 109.47275 * 120.00593 * 2 1 3 30 30 H 1.08994 * 109.47452 * 59.99587 * 4 3 2 31 31 H 1.09006 * 109.47107 * 299.99984 * 4 3 2 32 32 H 1.09000 * 109.46658 * 304.99889 * 5 4 3 33 33 H 1.08996 * 109.47073 * 185.00017 * 5 4 3 34 34 H 1.08998 * 113.25914 * 17.05553 * 7 6 5 35 35 H 1.09003 * 113.47880 * 332.86232 * 8 7 6 36 36 H 1.09001 * 113.53365 * 202.40102 * 8 7 6 37 37 H 1.08998 * 109.46948 * 50.00006 * 10 9 8 38 38 H 1.09000 * 109.46862 * 290.00324 * 10 9 8 39 39 H 1.08997 * 109.47047 * 304.99674 * 15 11 10 40 40 H 1.08997 * 109.47298 * 65.00333 * 15 11 10 41 41 H 0.97002 * 120.00026 * 180.02562 * 19 18 16 42 42 H 1.09005 * 113.47892 * 87.75551 * 24 9 8 43 43 H 1.09003 * 113.48321 * 218.22320 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3986 3.5447 1.2217 7 6 3.7205 4.9331 1.3248 8 6 2.7307 5.7466 2.1704 9 7 3.5344 5.3925 3.3552 10 6 3.6821 6.5446 4.2547 11 6 4.2994 6.0836 5.5766 12 1 5.2368 5.5641 5.3782 13 6 3.3684 5.1719 6.2613 14 7 2.6478 4.4724 6.7883 15 6 4.5684 7.2998 6.4652 16 6 5.2875 6.8598 7.7144 17 1 5.5289 5.8172 7.8597 18 6 5.6382 7.7885 8.6713 19 7 5.3447 9.0582 8.4940 20 14 6.5302 7.2433 10.2193 21 1 7.8191 6.6052 9.8493 22 1 6.7923 8.4238 11.0813 23 1 5.6888 6.2676 10.9577 24 6 4.6990 5.2690 2.4590 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 3.3492 3.4418 -0.8412 33 1 4.9082 3.0253 -0.0899 34 1 3.9693 5.3895 0.3668 35 1 1.7251 5.3261 2.1864 36 1 2.7381 6.8127 1.9435 37 1 2.7034 6.9850 4.4447 38 1 4.3308 7.2873 3.7902 39 1 5.1861 8.0160 5.9235 40 1 3.6222 7.7679 6.7365 41 1 5.5917 9.7116 9.1670 42 1 5.2326 6.2075 2.3084 43 1 5.3618 4.4436 2.7193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353002197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:30 Heat of formation + Delta-G solvation = -36.341007 kcal Electronic energy + Delta-G solvation = -21580.245845 eV Core-core repulsion = 18241.002771 eV Total energy + Delta-G solvation = -3339.243074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29052 -38.42610 -36.98546 -35.96150 -33.71491 -32.25933 -31.80991 -29.53470 -28.36573 -25.97761 -25.53243 -23.03239 -22.83138 -22.59188 -21.66378 -19.99975 -17.37278 -17.00131 -16.69839 -16.51758 -16.03836 -15.83221 -15.27164 -14.81156 -14.59249 -14.49998 -13.93811 -13.59265 -13.23279 -13.08571 -12.81970 -12.60727 -12.51618 -12.26849 -11.88144 -11.71081 -11.59685 -11.56029 -11.23592 -11.10796 -11.06986 -10.94749 -10.86777 -10.59704 -10.47010 -10.13763 -9.84501 -9.54930 -9.46033 -9.20253 -8.68390 -8.42507 -6.07075 -4.09868 3.32515 3.33144 3.37023 3.41328 3.41997 3.83034 3.93938 4.17705 4.36655 4.43942 4.72331 4.78707 4.80002 4.92012 4.94512 4.98222 5.07898 5.10261 5.17746 5.22006 5.28075 5.30944 5.43493 5.49958 5.52309 5.57575 5.66420 5.70811 5.85514 5.87825 5.90120 6.00515 6.31776 6.54107 6.63826 6.94421 7.10314 7.24099 7.44808 7.56638 7.88478 8.26724 8.67702 8.94771 9.55280 11.03876 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.002826 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.831298 B = 9904.870602 C =10329.715451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.341 6.341 7 C 0.059 3.941 8 C -0.004 4.004 9 N -0.462 5.462 10 C 0.024 3.976 11 C 0.017 3.983 12 H 0.099 0.901 13 C 0.257 3.743 14 N -0.480 5.480 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.021 4.021 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.081 0.919 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -10.640 -22.920 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.259 6.259 7 C 0.000 4.000 8 C -0.133 4.133 9 N -0.184 5.184 10 C -0.106 4.106 11 C -0.005 4.005 12 H 0.116 0.884 13 C -0.060 4.060 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.150 4.150 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.807 -12.003 -21.416 24.844 hybrid contribution 1.410 0.727 0.191 1.598 sum -2.397 -11.276 -21.225 24.153 Atomic orbital electron populations 1.21735 0.93725 1.02124 1.03299 1.22449 0.95759 0.83907 0.99858 1.87971 1.20486 1.26164 1.95365 1.22502 0.82266 0.95658 1.00804 1.22591 0.98327 0.92662 0.87926 1.88083 1.79594 1.21217 1.37013 1.23151 0.96718 0.83119 0.96974 1.24094 1.00097 0.98450 0.90658 1.69054 1.06599 1.34304 1.08429 1.22851 1.01760 0.92173 0.93773 1.19084 0.93730 0.95412 0.92275 0.88361 1.28777 0.93031 0.92485 0.91731 1.80888 1.11549 1.11921 1.11360 1.19176 0.97909 0.90123 0.93529 1.21119 1.37624 0.94073 1.03514 0.92553 1.24954 0.95847 0.94871 0.98322 1.69931 1.46909 1.01036 1.35292 0.86647 0.80255 0.78082 0.83062 1.20070 1.21204 1.20205 1.24488 0.95436 1.02207 0.92888 0.91217 0.91565 0.91982 0.93712 0.93317 0.92024 0.92262 0.92513 0.91720 0.90259 0.89106 0.90187 0.90405 0.91795 0.94551 0.95643 0.92779 0.90110 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.15 0.38 -0.81 16 2 C 0.06 0.49 6.66 37.15 0.25 0.74 16 3 O -0.38 -4.36 10.31 -40.08 -0.41 -4.78 16 4 C 0.06 0.58 6.32 37.16 0.23 0.82 16 5 C 0.06 0.56 6.16 37.16 0.23 0.79 16 6 O -0.34 -4.39 10.36 -40.08 -0.42 -4.81 16 7 C 0.06 0.64 4.66 -26.20 -0.12 0.52 16 8 C 0.00 -0.05 7.52 -7.55 -0.06 -0.10 16 9 N -0.46 -6.87 6.03 -244.66 -1.48 -8.34 16 10 C 0.02 0.37 4.18 -3.82 -0.02 0.36 16 11 C 0.02 0.33 2.42 -93.40 -0.23 0.11 16 12 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 13 C 0.26 5.77 13.66 -20.82 -0.28 5.49 16 14 N -0.48 -11.68 18.52 42.08 0.78 -10.90 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -14.32 8.60 -34.44 -0.30 -14.62 16 17 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.02 -0.25 7.55 -7.55 -0.06 -0.30 16 25 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 37 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -33.38 365.74 -7.94 -41.32 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -7.46 Total: -4.75 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.19 Total: -4.75 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.04 Total: -44.37 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.83 Total: -9.58 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.38 -7.94 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353002197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.974 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds