Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47553 * 2 1 4 4 C 1.42894 * 114.00353 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47369 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47074 * 64.99366 * 5 4 3 7 7 C 1.42896 * 113.99668 * 179.97438 * 6 5 4 8 8 C 1.53514 * 114.16897 * 150.00147 * 7 6 5 9 9 N 1.47478 * 87.93080 * 87.62526 * 8 7 6 10 10 C 1.46905 * 111.00309 * 138.70596 * 9 8 7 11 11 C 1.52997 * 109.47325 * 170.00109 * 10 9 8 12 12 H 1.08996 * 109.46952 * 54.99956 * 11 10 9 13 13 C 1.47206 * 109.47168 * 294.99733 * 11 10 9 14 14 N 8.20567 * 97.82989 * 56.62168 * 2 1 3 15 15 C 1.53002 * 109.46817 * 175.00015 * 11 10 9 16 16 C 1.50703 * 109.46865 * 184.99692 * 15 11 10 17 17 H 1.08006 * 120.00033 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00279 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99526 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00414 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47210 * 59.99590 * 20 18 16 22 22 H 1.48494 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46677 * 299.99864 * 20 18 16 24 24 C 1.47473 * 87.83879 * 27.01138 * 9 8 7 25 25 H 1.09008 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47247 * 299.99533 * 1 2 3 27 27 H 1.08999 * 109.47185 * 59.99925 * 1 2 3 28 28 H 1.09004 * 109.46800 * 239.99957 * 2 1 3 29 29 H 1.08996 * 109.47275 * 120.00593 * 2 1 3 30 30 H 1.08994 * 109.47452 * 59.99587 * 4 3 2 31 31 H 1.09006 * 109.47107 * 299.99984 * 4 3 2 32 32 H 1.09000 * 109.46658 * 304.99889 * 5 4 3 33 33 H 1.08996 * 109.47073 * 185.00017 * 5 4 3 34 34 H 1.08998 * 113.25914 * 17.05553 * 7 6 5 35 35 H 1.09003 * 113.47880 * 332.86232 * 8 7 6 36 36 H 1.09001 * 113.53365 * 202.40102 * 8 7 6 37 37 H 1.08998 * 109.46948 * 50.00006 * 10 9 8 38 38 H 1.09000 * 109.46862 * 290.00324 * 10 9 8 39 39 H 1.08997 * 109.47047 * 304.99674 * 15 11 10 40 40 H 1.08997 * 109.47298 * 65.00333 * 15 11 10 41 41 H 0.97002 * 120.00026 * 180.02562 * 19 18 16 42 42 H 1.09005 * 113.47892 * 87.75551 * 24 9 8 43 43 H 1.09003 * 113.48321 * 218.22320 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3986 3.5447 1.2217 7 6 3.7205 4.9331 1.3248 8 6 2.7307 5.7466 2.1704 9 7 3.5344 5.3925 3.3552 10 6 3.6821 6.5446 4.2547 11 6 4.2994 6.0836 5.5766 12 1 5.2368 5.5641 5.3782 13 6 3.3684 5.1719 6.2613 14 7 2.6478 4.4724 6.7883 15 6 4.5684 7.2998 6.4652 16 6 5.2875 6.8598 7.7144 17 1 5.5289 5.8172 7.8597 18 6 5.6382 7.7885 8.6713 19 7 5.3447 9.0582 8.4940 20 14 6.5302 7.2433 10.2193 21 1 7.8191 6.6052 9.8493 22 1 6.7923 8.4238 11.0813 23 1 5.6888 6.2676 10.9577 24 6 4.6990 5.2690 2.4590 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 3.3492 3.4418 -0.8412 33 1 4.9082 3.0253 -0.0899 34 1 3.9693 5.3895 0.3668 35 1 1.7251 5.3261 2.1864 36 1 2.7381 6.8127 1.9435 37 1 2.7034 6.9850 4.4447 38 1 4.3308 7.2873 3.7902 39 1 5.1861 8.0160 5.9235 40 1 3.6222 7.7679 6.7365 41 1 5.5917 9.7116 9.1670 42 1 5.2326 6.2075 2.3084 43 1 5.3618 4.4436 2.7193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353002197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -59.917546 kcal Electronic energy + Delta-G solvation = -21581.268201 eV Core-core repulsion = 18241.002771 eV Total energy + Delta-G solvation = -3340.265429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24868 -39.18955 -38.25676 -37.28283 -35.60800 -33.95173 -32.62324 -30.54322 -29.55865 -27.27165 -26.78262 -24.09718 -23.68143 -23.53340 -23.35523 -20.88731 -18.64005 -18.27792 -18.04631 -17.63416 -17.04674 -16.78263 -16.51730 -16.10640 -15.73354 -15.57389 -15.06019 -14.73206 -14.59992 -14.29862 -14.00756 -13.81360 -13.73335 -13.50022 -13.31088 -13.11058 -12.96739 -12.60901 -12.52765 -12.48278 -12.31241 -12.22764 -12.09490 -11.92878 -11.78535 -11.63347 -11.31915 -11.06015 -10.55731 -10.54970 -10.35649 -9.69501 -8.20197 -6.28455 1.39878 1.41932 1.49123 2.04575 2.12502 2.40936 2.58888 2.77412 3.14441 3.18895 3.34434 3.53392 3.93657 4.07110 4.10703 4.15240 4.27051 4.32325 4.34242 4.46854 4.47497 4.49931 4.55240 4.58475 4.63416 4.74440 4.78994 4.82624 4.89310 4.92402 4.93782 5.02051 5.04572 5.24906 5.45031 5.47787 5.64065 5.78018 6.08797 6.22166 6.28015 6.46264 6.81286 6.90889 7.39783 8.90485 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.002826 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.831298 B = 9904.870602 C =10329.715451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.411 6.411 4 C 0.059 3.941 5 C 0.057 3.943 6 O -0.378 6.378 7 C 0.067 3.933 8 C -0.004 4.004 9 N -0.498 5.498 10 C 0.035 3.965 11 C 0.026 3.974 12 H 0.111 0.889 13 C 0.266 3.734 14 N -0.519 5.519 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.019 4.019 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.000 1.000 41 H 0.265 0.735 42 H 0.106 0.894 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -10.812 -24.724 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.018 4.018 5 C -0.019 4.019 6 O -0.297 6.297 7 C 0.009 3.991 8 C -0.133 4.133 9 N -0.221 5.221 10 C -0.094 4.094 11 C 0.004 3.996 12 H 0.129 0.871 13 C -0.050 4.050 14 N -0.197 5.197 15 C 0.001 3.999 16 C -0.580 4.580 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.209 1.209 24 C -0.148 4.148 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.567 -12.186 -23.237 26.364 hybrid contribution 1.006 0.740 0.723 1.443 sum -1.562 -11.446 -22.514 25.305 Atomic orbital electron populations 1.21762 0.93441 1.03227 1.02379 1.22616 0.96123 0.83147 1.00704 1.87933 1.21903 1.27692 1.95562 1.22692 0.81337 0.96114 1.01615 1.22821 0.99808 0.92377 0.86883 1.88042 1.80214 1.22414 1.38996 1.23188 0.95314 0.82462 0.98150 1.24179 0.99082 1.00209 0.89826 1.68995 1.08964 1.34134 1.09990 1.22707 1.01578 0.93040 0.92100 1.19094 0.94065 0.93154 0.93264 0.87114 1.29413 0.92615 0.92078 0.90934 1.80876 1.12988 1.13238 1.12561 1.18995 0.96123 0.91579 0.93227 1.21516 1.37633 0.93828 1.04981 0.93131 1.25706 0.96747 0.95025 1.01202 1.70019 1.47967 1.01873 1.36332 0.85751 0.79488 0.77708 0.79652 1.18684 1.20464 1.20888 1.24579 0.94757 1.03084 0.92404 0.89140 0.93446 0.91868 0.91557 0.93680 0.89106 0.93438 0.91547 0.89337 0.86672 0.91089 0.87548 0.91100 0.89134 0.94273 0.98171 0.92634 0.87620 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.41 -9.20 10.31 -144.34 -1.49 -10.69 16 4 C 0.06 0.99 6.32 71.98 0.45 1.45 16 5 C 0.06 0.93 6.16 71.98 0.44 1.37 16 6 O -0.38 -9.24 10.36 -144.34 -1.49 -10.74 16 7 C 0.07 1.29 4.66 30.94 0.14 1.44 16 8 C 0.00 -0.10 7.52 83.57 0.63 0.53 16 9 N -0.50 -14.10 6.03 -928.36 -5.60 -19.70 16 10 C 0.04 1.05 4.18 86.30 0.36 1.41 16 11 C 0.03 1.01 2.42 -12.60 -0.03 0.98 16 12 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 13 C 0.27 12.01 13.66 89.47 1.22 13.23 16 14 N -0.52 -25.60 18.52 19.98 0.37 -25.23 16 15 C 0.04 1.87 4.42 29.85 0.13 2.01 16 16 C -0.54 -29.50 8.60 25.60 0.22 -29.28 16 17 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 18 C 0.01 0.68 5.46 84.65 0.46 1.15 16 19 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 20 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 C -0.02 -0.41 7.55 83.58 0.63 0.22 16 25 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 1.38 7.88 -2.39 -0.02 1.36 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.78 7.91 -2.39 -0.02 1.77 16 37 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 38 H 0.09 2.20 7.30 -2.39 -0.02 2.18 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.11 1.69 7.42 -2.38 -0.02 1.68 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -72.48 365.74 0.95 -71.52 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.96 Total: 7.54 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.89 Total: -5.75 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.95 Total: -98.07 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -2.98 Total: -21.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.48 0.95 -71.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353002197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.607 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds