Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47054 * 2 1 4 4 C 1.50695 * 109.47445 * 120.00358 * 2 1 3 5 5 H 1.08001 * 120.00230 * 120.00165 * 4 2 1 6 6 C 1.37876 * 119.99862 * 299.99648 * 4 2 1 7 7 N 1.31513 * 120.00048 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46879 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47409 * 120.00235 * 8 6 4 11 11 H 1.48503 * 109.47117 * 240.00423 * 8 6 4 12 12 N 1.46502 * 109.47227 * 240.00451 * 2 1 3 13 13 C 1.46503 * 119.99777 * 300.00375 * 12 2 1 14 14 C 1.34773 * 120.00517 * 119.99258 * 12 2 1 15 15 O 1.21288 * 119.99670 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00527 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47453 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47103 * 179.97438 * 17 16 14 19 19 C 1.53006 * 110.21751 * 301.92873 * 18 17 16 20 20 C 1.54480 * 110.24548 * 180.02562 * 18 17 16 21 21 C 1.54637 * 101.79655 * 266.30938 * 20 18 17 22 22 C 1.51339 * 104.16489 * 335.24730 * 21 20 18 23 23 O 1.21283 * 124.92513 * 196.22783 * 22 21 20 24 24 N 1.34412 * 110.13391 * 16.20052 * 22 21 20 25 25 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47226 * 299.99649 * 1 2 3 27 27 H 1.08998 * 109.47453 * 59.99639 * 1 2 3 28 28 H 0.97003 * 119.99938 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46555 * 269.99841 * 13 12 2 30 30 H 1.09001 * 109.47024 * 29.98980 * 13 12 2 31 31 H 1.08991 * 109.47420 * 149.99601 * 13 12 2 32 32 H 1.09003 * 109.47107 * 60.00133 * 16 14 12 33 33 H 1.09004 * 109.46956 * 300.00801 * 16 14 12 34 34 H 1.09003 * 109.47065 * 59.99851 * 17 16 14 35 35 H 1.08994 * 109.47033 * 299.99908 * 17 16 14 36 36 H 1.08994 * 109.46755 * 298.77333 * 19 18 17 37 37 H 1.08999 * 109.46585 * 58.77639 * 19 18 17 38 38 H 1.09003 * 109.47143 * 178.76761 * 19 18 17 39 39 H 1.09002 * 110.96988 * 24.44796 * 20 18 17 40 40 H 1.09003 * 110.97155 * 148.17308 * 20 18 17 41 41 H 1.09001 * 110.48391 * 93.89928 * 21 20 18 42 42 H 1.08997 * 110.48457 * 216.54082 * 21 20 18 43 43 H 0.97001 * 124.35121 * 180.45650 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1196 4.0078 9 1 3.1476 -2.2865 3.6035 10 1 3.1475 -0.1859 4.8160 11 1 1.1680 -1.5868 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0835 15 8 3.0863 1.1256 -1.8913 16 6 3.2949 -0.7456 -3.3142 17 6 4.1454 0.2159 -4.1467 18 6 4.6554 -0.5053 -5.3959 19 6 5.4682 -1.7395 -4.9992 20 6 5.5179 0.4501 -6.2502 21 6 4.4762 1.0116 -7.2456 22 6 3.4031 -0.0542 -7.2991 23 8 2.5518 -0.1399 -8.1588 24 7 3.5308 -0.8922 -6.2560 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1607 3.4844 29 1 2.4156 -2.7376 -0.9718 30 1 0.6903 -2.3001 -0.9847 31 1 1.6236 -2.2851 -2.5003 32 1 2.4469 -1.0879 -3.9075 33 1 3.9003 -1.6023 -3.0179 34 1 4.9934 0.5577 -3.5533 35 1 3.5403 1.0727 -4.4430 36 1 6.3317 -1.4316 -4.4096 37 1 4.8448 -2.4102 -4.4079 38 1 5.8068 -2.2558 -5.8975 39 1 5.9410 1.2464 -5.6378 40 1 6.3029 -0.0957 -6.7736 41 1 4.0632 1.9504 -6.8764 42 1 4.9251 1.1517 -8.2289 43 1 2.9540 -1.6548 -6.0927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355578285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -107.210575 kcal Electronic energy + Delta-G solvation = -22892.812988 eV Core-core repulsion = 19550.496779 eV Total energy + Delta-G solvation = -3342.316209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69374 -40.60727 -38.31337 -37.12184 -34.85476 -33.88349 -32.24911 -31.58845 -30.19340 -27.59732 -27.29747 -26.46408 -24.75975 -22.65393 -21.75342 -20.92533 -19.74845 -18.53692 -18.13431 -17.71549 -17.09090 -16.79203 -16.65985 -16.10583 -15.87397 -15.14739 -14.80437 -14.70106 -14.58450 -14.34715 -13.89142 -13.78858 -13.46020 -13.40751 -13.23940 -13.09916 -12.94475 -12.82701 -12.69640 -12.62416 -12.37166 -12.19691 -12.12552 -12.08930 -11.72847 -11.44036 -11.17006 -10.92124 -10.65019 -10.45991 -10.10933 -9.29938 -8.14634 -6.31561 1.40927 1.42347 1.53727 1.59145 1.86203 2.33400 2.42738 2.52582 3.13310 3.37207 3.57673 3.64508 3.96680 4.03601 4.12544 4.30385 4.36624 4.43916 4.55864 4.64648 4.69762 4.77623 4.82156 4.85769 4.94600 5.00349 5.01996 5.04988 5.08363 5.17424 5.19721 5.26998 5.42058 5.46387 5.62388 5.68398 5.92369 6.03489 6.08734 6.16354 6.77379 6.88155 7.28064 7.33839 7.52272 8.89853 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.003605 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.123629 B = 7765.071560 C = 7970.599088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.259 3.741 3 H 0.007 0.993 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.488 3.512 15 O -0.607 6.607 16 C -0.125 4.125 17 C -0.102 4.102 18 C 0.160 3.840 19 C -0.156 4.156 20 C -0.116 4.116 21 C -0.155 4.155 22 C 0.511 3.489 23 O -0.594 6.594 24 N -0.711 5.711 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.264 0.736 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.150 -7.855 -15.894 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.025 0.975 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.335 5.335 13 C -0.060 4.060 14 C 0.278 3.722 15 O -0.490 6.490 16 C -0.165 4.165 17 C -0.141 4.141 18 C 0.074 3.926 19 C -0.213 4.213 20 C -0.154 4.154 21 C -0.195 4.195 22 C 0.299 3.701 23 O -0.475 6.475 24 N -0.365 5.365 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.845 -7.129 -16.096 20.170 hybrid contribution -0.589 -0.190 1.366 1.499 sum 9.256 -7.319 -14.730 18.874 Atomic orbital electron populations 1.21886 0.97535 1.00029 0.99759 1.18505 0.91396 0.92262 0.82152 0.97488 1.21609 1.31736 1.12960 0.91084 0.91977 1.25771 0.95108 0.95642 1.02150 1.70039 1.37451 1.24055 1.24323 0.85391 0.78183 0.78523 0.78810 1.18657 1.21145 1.20183 1.48278 1.49241 1.13440 1.22504 1.21809 1.01437 0.80469 1.02245 1.21588 0.78110 0.86820 0.85680 1.90617 1.60171 1.19771 1.78439 1.21749 1.01759 1.00242 0.92728 1.21705 0.99987 0.97320 0.95136 1.21165 0.85836 0.96397 0.89160 1.22171 1.00428 0.95791 1.02925 1.22770 0.96784 0.99236 0.96594 1.22422 0.95574 0.97989 1.03554 1.21472 0.84970 0.83604 0.80094 1.90719 1.40466 1.75883 1.40467 1.46468 1.33788 1.30614 1.25632 0.93355 0.91510 0.96445 0.92709 0.92320 0.91608 0.88654 0.87906 0.86180 0.90138 0.93035 0.89635 0.91072 0.90696 0.87838 0.87481 0.87743 0.86741 0.74911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.95 71.98 0.64 -5.88 16 2 C 0.26 13.50 2.64 44.24 0.12 13.61 16 3 H 0.01 0.45 6.90 -2.39 -0.02 0.43 16 4 C -0.54 -28.89 8.37 25.60 0.21 -28.67 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.95 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.60 -24.78 2.75 -826.81 -2.28 -27.06 16 13 C 0.08 2.44 9.48 127.77 1.21 3.66 16 14 C 0.49 19.03 7.67 87.66 0.67 19.70 16 15 O -0.61 -29.82 15.31 -3.06 -0.05 -29.87 16 16 C -0.13 -2.95 3.75 29.85 0.11 -2.84 16 17 C -0.10 -2.19 3.70 30.59 0.11 -2.08 16 18 C 0.16 2.24 0.88 4.06 0.00 2.24 16 19 C -0.16 -1.50 8.43 71.98 0.61 -0.89 16 20 C -0.12 -1.27 6.20 31.65 0.20 -1.07 16 21 C -0.16 -2.36 6.86 30.61 0.21 -2.15 16 22 C 0.51 11.54 8.43 87.92 0.74 12.28 16 23 O -0.59 -19.21 18.03 -3.04 -0.05 -19.26 16 24 N -0.71 -12.11 5.04 -419.91 -2.12 -14.22 16 25 H 0.05 2.12 6.66 -2.39 -0.02 2.11 16 26 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 2.04 6.43 -2.39 -0.02 2.02 16 31 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 32 H 0.10 2.04 6.84 -2.39 -0.02 2.03 16 33 H 0.12 2.17 6.39 -2.39 -0.02 2.15 16 34 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.65 6.40 -2.39 -0.02 0.63 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 1.00 7.89 -2.39 -0.02 0.98 16 40 H 0.11 0.74 7.91 -2.39 -0.02 0.72 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.41 6.21 8.74 -92.71 -0.81 5.40 16 Total: -1.00 -77.61 341.65 3.27 -74.34 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.20 Total: 15.32 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.29 Total: 9.05 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -4.15 Total: -94.24 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.10 Total: -49.13 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -77.61 3.27 -74.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355578285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.871 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds