Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46949 * 2 1 4 4 C 1.50699 * 109.46756 * 239.99900 * 2 1 3 5 5 H 1.07998 * 119.99670 * 239.99581 * 4 2 1 6 6 C 1.37872 * 120.00129 * 59.99765 * 4 2 1 7 7 N 1.31514 * 120.00378 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46782 * 90.00346 * 8 6 4 10 10 H 1.48506 * 109.47184 * 210.00452 * 8 6 4 11 11 H 1.48498 * 109.47075 * 330.00462 * 8 6 4 12 12 N 1.46503 * 109.46977 * 119.99874 * 2 1 3 13 13 C 1.46499 * 119.99957 * 60.00232 * 12 2 1 14 14 C 1.34781 * 119.99532 * 239.99901 * 12 2 1 15 15 O 1.21280 * 119.99951 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99496 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46833 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47283 * 179.97438 * 17 16 14 19 19 C 1.52999 * 110.28631 * 301.97510 * 18 17 16 20 20 C 1.54481 * 110.24728 * 179.97438 * 18 17 16 21 21 C 1.54625 * 101.79703 * 215.60043 * 20 18 17 22 22 C 1.51287 * 104.19667 * 24.78286 * 21 20 18 23 23 O 1.21283 * 124.93863 * 163.78239 * 22 21 20 24 24 N 1.34414 * 110.11346 * 343.74448 * 22 21 20 25 25 H 1.08997 * 109.47067 * 300.00071 * 1 2 3 26 26 H 1.08994 * 109.47336 * 60.00386 * 1 2 3 27 27 H 1.09005 * 109.46896 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00263 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46712 * 269.99264 * 13 12 2 30 30 H 1.08996 * 109.47411 * 29.99970 * 13 12 2 31 31 H 1.09006 * 109.46591 * 149.99849 * 13 12 2 32 32 H 1.08991 * 109.47242 * 60.00123 * 16 14 12 33 33 H 1.08997 * 109.47209 * 299.99923 * 16 14 12 34 34 H 1.08997 * 109.47499 * 59.99493 * 17 16 14 35 35 H 1.09010 * 109.46820 * 300.00029 * 17 16 14 36 36 H 1.09004 * 109.46955 * 298.72566 * 19 18 17 37 37 H 1.09003 * 109.47186 * 58.71681 * 19 18 17 38 38 H 1.08995 * 109.47264 * 178.72621 * 19 18 17 39 39 H 1.09002 * 110.96936 * 97.46454 * 20 18 17 40 40 H 1.09003 * 110.97019 * 333.74077 * 20 18 17 41 41 H 1.09010 * 110.48568 * 143.45878 * 21 20 18 42 42 H 1.09003 * 110.49084 * 265.96626 * 21 20 18 43 43 H 0.96996 * 124.34684 * 179.59158 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6991 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3223 -1.1198 -4.0079 9 1 1.3446 -2.1617 -4.4122 10 1 2.4872 -0.1405 -5.1121 11 1 3.6306 -1.7568 -3.7119 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0858 1.1258 1.8915 16 6 3.2960 -0.7461 3.3135 17 6 4.1454 0.2159 4.1467 18 6 4.6553 -0.5053 5.3960 19 6 3.4800 -1.0378 6.2181 20 6 5.5167 0.4506 6.2509 21 6 6.5965 -0.5073 6.8052 22 6 6.6460 -1.6340 5.7968 23 8 7.5433 -2.4447 5.7047 24 7 5.5505 -1.6061 5.0185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7094 1.1616 -3.4844 29 1 0.7376 -2.1443 1.9994 30 1 1.5296 -2.5969 0.4709 31 1 2.4630 -2.5818 1.9864 32 1 3.9017 -1.6021 3.0166 33 1 2.4485 -1.0890 3.9070 34 1 3.5393 1.0718 4.4436 35 1 4.9930 0.5592 3.5534 36 1 2.8553 -0.2048 6.5408 37 1 2.8886 -1.7198 5.6071 38 1 3.8584 -1.5679 7.0920 39 1 4.9299 0.8867 7.0594 40 1 5.9653 1.2289 5.6335 41 1 7.5613 -0.0030 6.8615 42 1 6.3059 -0.8831 7.7863 43 1 5.3741 -2.2326 4.2993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355578292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -84.130037 kcal Electronic energy + Delta-G solvation = -22817.439860 eV Core-core repulsion = 19476.124498 eV Total energy + Delta-G solvation = -3341.315362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84944 -39.11832 -37.33464 -35.39035 -33.24903 -32.67438 -31.56176 -29.96643 -28.82779 -26.29073 -25.96324 -25.24019 -23.57043 -21.08157 -20.95874 -20.00703 -18.22898 -17.24292 -16.56956 -16.33752 -16.04765 -15.49158 -15.29460 -14.85144 -14.43113 -14.14412 -13.88668 -13.61661 -13.16357 -12.99508 -12.83099 -12.61680 -12.44206 -12.41372 -12.07705 -11.86430 -11.60198 -11.43085 -11.20586 -11.07346 -11.00153 -10.84516 -10.74855 -10.65269 -10.28633 -10.19120 -10.00033 -9.29713 -9.20788 -8.94798 -8.45152 -7.61849 -6.09852 -4.18070 2.46801 3.18034 3.24379 3.31516 3.33416 3.37990 3.86255 4.08831 4.22746 4.36861 4.49991 4.73500 4.76954 5.02950 5.13929 5.21281 5.22684 5.28297 5.35506 5.44614 5.52090 5.59929 5.66031 5.71061 5.74780 5.91463 5.97505 6.07535 6.24148 6.32959 6.68376 6.72357 6.80309 6.90593 7.03836 7.39241 7.51127 7.69232 7.98969 8.12160 8.17630 8.50862 8.80568 9.03175 9.48723 10.95433 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003657 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.559962 B = 7653.699154 C = 8074.440055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.594 5.594 13 C 0.084 3.916 14 C 0.501 3.499 15 O -0.554 6.554 16 C -0.142 4.142 17 C -0.104 4.104 18 C 0.154 3.846 19 C -0.159 4.159 20 C -0.124 4.124 21 C -0.156 4.156 22 C 0.519 3.481 23 O -0.542 6.542 24 N -0.720 5.720 25 H 0.010 0.990 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -3.383 18.244 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.288 3.712 15 O -0.434 6.434 16 C -0.182 4.182 17 C -0.142 4.142 18 C 0.068 3.932 19 C -0.218 4.218 20 C -0.162 4.162 21 C -0.196 4.196 22 C 0.306 3.694 23 O -0.419 6.419 24 N -0.375 5.375 25 H 0.029 0.971 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.726 -3.000 18.015 18.639 hybrid contribution 0.028 -0.929 -1.298 1.596 sum 3.755 -3.928 16.717 17.578 Atomic orbital electron populations 1.22079 0.98236 0.99343 1.00755 1.18931 0.90846 0.94536 0.80019 0.91930 1.21317 1.31855 1.13018 0.90358 0.92303 1.24891 0.94930 0.94956 0.98972 1.69875 1.36372 1.22529 1.23780 0.86502 0.79204 0.79317 0.82422 1.20598 1.21061 1.19933 1.48256 1.49011 1.11574 1.23618 1.21593 0.98669 0.83407 1.02371 1.20374 0.79251 0.87200 0.84351 1.90648 1.58511 1.17235 1.76974 1.21766 1.00823 0.99614 0.96042 1.21659 1.00594 0.97999 0.93966 1.21163 0.90262 0.86552 0.95272 1.22251 0.97510 1.02115 0.99884 1.22712 0.96452 0.97203 0.99786 1.22352 1.01834 0.96145 0.99305 1.20881 0.81076 0.85375 0.82117 1.90755 1.37217 1.42201 1.71766 1.46481 1.21768 1.33111 1.36151 0.97078 0.88870 0.95217 0.92665 0.93919 0.90132 0.92919 0.89947 0.89161 0.89479 0.90265 0.90833 0.91488 0.92233 0.88973 0.89439 0.88144 0.87970 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -14.10 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.15 2.75 -175.26 -0.48 -12.63 16 13 C 0.08 1.33 9.24 59.85 0.55 1.88 16 14 C 0.50 9.67 7.67 -10.98 -0.08 9.59 16 15 O -0.55 -12.97 15.31 5.56 0.09 -12.89 16 16 C -0.14 -1.80 3.74 -27.88 -0.10 -1.91 16 17 C -0.10 -1.17 3.71 -26.73 -0.10 -1.27 16 18 C 0.15 1.31 0.88 -130.87 -0.11 1.19 16 19 C -0.16 -1.11 8.42 37.16 0.31 -0.80 16 20 C -0.12 -0.86 6.20 -25.10 -0.16 -1.02 16 21 C -0.16 -1.21 6.86 -26.74 -0.18 -1.40 16 22 C 0.52 6.08 8.43 -10.86 -0.09 5.99 16 23 O -0.54 -8.73 18.03 5.55 0.10 -8.63 16 24 N -0.72 -7.21 5.40 -46.58 -0.25 -7.47 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 31 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 33 H 0.09 0.95 6.39 -51.93 -0.33 0.62 16 34 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 1.05 8.10 -51.92 -0.42 0.63 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.48 6.40 -51.93 -0.33 0.15 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.46 7.89 -51.93 -0.41 0.05 16 40 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 41 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.41 4.04 7.76 -40.82 -0.32 3.73 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -33.49 341.09 -6.78 -40.27 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.79 Total: 1.90 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.19 Total: 2.73 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.11 Total: -44.43 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.19 Total: -21.52 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.49 -6.78 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355578292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.863 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds