Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47040 * 2 1 4 4 C 1.46505 * 119.99741 * 269.99659 * 3 2 1 5 5 C 1.50695 * 109.47091 * 270.00069 * 4 3 2 6 6 H 1.07999 * 120.00199 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99833 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47210 * 89.99888 * 9 7 5 11 11 H 1.48495 * 109.47144 * 210.00084 * 9 7 5 12 12 H 1.48502 * 109.47100 * 329.99748 * 9 7 5 13 13 C 1.34769 * 120.00411 * 89.99771 * 3 2 1 14 14 O 1.21281 * 120.00304 * 180.02562 * 13 3 2 15 15 C 1.50709 * 119.99797 * 359.97438 * 13 3 2 16 16 C 1.53001 * 109.46898 * 179.97438 * 15 13 3 17 17 C 1.52997 * 109.47015 * 180.02562 * 16 15 13 18 18 C 1.53002 * 110.28752 * 63.02318 * 17 16 15 19 19 C 1.54479 * 110.24874 * 185.00300 * 17 16 15 20 20 C 1.54623 * 101.76734 * 144.41829 * 19 17 16 21 21 C 1.51282 * 104.31101 * 335.13584 * 20 19 17 22 22 O 1.21286 * 124.94199 * 196.27917 * 21 20 19 23 23 N 1.34735 * 109.93792 * 16.31290 * 21 20 19 24 24 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47233 * 300.00663 * 1 2 3 26 26 H 1.09001 * 109.46729 * 60.00538 * 1 2 3 27 27 H 1.09000 * 109.47007 * 239.99838 * 2 1 3 28 28 H 1.09001 * 109.46729 * 119.99462 * 2 1 3 29 29 H 1.09000 * 109.46921 * 30.00296 * 4 3 2 30 30 H 1.09003 * 109.47070 * 150.00012 * 4 3 2 31 31 H 0.97004 * 120.00293 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46451 * 60.00183 * 15 13 3 33 33 H 1.08999 * 109.47079 * 300.00299 * 15 13 3 34 34 H 1.08999 * 109.46799 * 60.00353 * 16 15 13 35 35 H 1.08999 * 109.47507 * 300.00045 * 16 15 13 36 36 H 1.08994 * 109.47207 * 181.27615 * 18 17 16 37 37 H 1.09001 * 109.47001 * 301.27974 * 18 17 16 38 38 H 1.09000 * 109.46830 * 61.27227 * 18 17 16 39 39 H 1.08994 * 110.96846 * 26.29266 * 19 17 16 40 40 H 1.09004 * 110.96814 * 262.53912 * 19 17 16 41 41 H 1.09002 * 110.48860 * 93.88058 * 20 19 17 42 42 H 1.08998 * 110.48497 * 216.38951 * 20 19 17 43 43 H 0.97003 * 124.30433 * 180.38606 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 5.9761 0.8741 -4.2601 11 1 6.3924 3.2624 -4.2009 12 1 6.7736 1.9158 -2.2205 13 6 2.2430 2.0167 1.1671 14 8 2.6468 3.1603 1.1671 15 6 1.9912 1.3065 2.4723 16 6 2.3233 2.2437 3.6351 17 6 2.0684 1.5225 4.9602 18 6 2.9973 0.3142 5.0938 19 6 2.2776 2.4914 6.1451 20 6 1.1908 2.0159 7.1369 21 6 0.1474 1.3578 6.2611 22 8 -0.9875 1.1029 6.6047 23 7 0.6663 1.0970 5.0453 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1411 -1.1385 31 1 3.6753 3.5160 -4.4441 32 1 2.6211 0.4188 2.5302 33 1 0.9431 1.0127 2.5298 34 1 1.6937 3.1316 3.5773 35 1 3.3715 2.5371 3.5774 36 1 2.7891 -0.2023 6.0308 37 1 2.8306 -0.3664 4.2589 38 1 4.0341 0.6505 5.0869 39 1 2.1033 3.5233 5.8406 40 1 3.2735 2.3753 6.5726 41 1 1.6063 1.2959 7.8419 42 1 0.7619 2.8652 7.6687 43 1 0.1754 0.6815 4.3191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355615115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = -89.015089 kcal Electronic energy + Delta-G solvation = -22843.261811 eV Core-core repulsion = 19501.734617 eV Total energy + Delta-G solvation = -3341.527194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83643 -39.10715 -37.32959 -35.33976 -33.21337 -32.62572 -31.55350 -30.14656 -29.52709 -27.30810 -25.91054 -23.80483 -23.03311 -22.05807 -20.98370 -20.14161 -18.22668 -17.25055 -16.51589 -16.32403 -16.15261 -15.56296 -15.24121 -14.82700 -14.40460 -14.15150 -13.97487 -13.61782 -13.42008 -13.20509 -12.87423 -12.78941 -12.63932 -12.39945 -12.06740 -11.97470 -11.86788 -11.49834 -11.27041 -11.14908 -10.99134 -10.94774 -10.80604 -10.66008 -10.48348 -10.15207 -10.01266 -9.65674 -9.29003 -8.91566 -8.45724 -7.68522 -6.06308 -4.11251 2.44762 3.17109 3.27810 3.34304 3.36928 3.42730 3.85085 4.09245 4.23227 4.41699 4.49962 4.73463 4.77356 5.01857 5.13789 5.20539 5.26551 5.28225 5.31327 5.35063 5.46187 5.54682 5.60381 5.62246 5.70087 5.72535 5.74616 5.91092 6.00674 6.11404 6.20193 6.25285 6.45550 6.68258 6.88177 7.05162 7.42897 7.52939 7.90000 8.10589 8.21645 8.41148 8.88085 9.07718 9.53990 11.01752 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.003785 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.929927 B = 7396.210463 C = 7892.653817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.143 4.143 16 C -0.104 4.104 17 C 0.155 3.845 18 C -0.159 4.159 19 C -0.123 4.123 20 C -0.156 4.156 21 C 0.520 3.480 22 O -0.541 6.541 23 N -0.721 5.721 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -6.703 17.588 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.421 6.421 15 C -0.183 4.183 16 C -0.142 4.142 17 C 0.068 3.932 18 C -0.217 4.217 19 C -0.161 4.161 20 C -0.197 4.197 21 C 0.306 3.694 22 O -0.419 6.419 23 N -0.376 5.376 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.561 -6.063 17.662 18.849 hybrid contribution 0.765 -0.478 -0.913 1.283 sum -1.796 -6.541 16.750 18.071 Atomic orbital electron populations 1.22227 0.96841 1.01409 1.02316 1.21404 0.93447 0.84297 1.02597 1.48269 1.63605 1.13193 1.07863 1.19259 0.96224 0.93629 0.78238 1.21428 0.96930 1.31915 1.06230 0.92512 1.24939 0.97850 0.94918 0.96414 1.69931 1.35704 1.33409 1.14315 0.86504 0.84678 0.77687 0.78587 1.20658 1.21080 1.19904 1.20281 0.78547 0.86959 0.85155 1.90669 1.45977 1.18140 1.87293 1.21785 1.02643 1.00089 0.93828 1.21665 1.04148 0.98063 0.90358 1.21145 0.81012 0.94559 0.96470 1.22239 0.99539 0.97470 1.02472 1.22715 0.99701 0.99705 0.94013 1.22351 0.96291 1.02398 0.98625 1.20960 0.87681 0.77566 0.83174 1.90752 1.19586 1.54900 1.76631 1.46555 1.13404 1.62786 1.14899 0.92170 0.93147 0.92029 0.90022 0.91797 0.95132 0.93955 0.92713 0.89176 0.90114 0.90370 0.89375 0.92243 0.91576 0.90781 0.89443 0.88948 0.87976 0.88156 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.12 2.46 -175.05 -0.43 -12.55 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.50 9.82 7.67 -10.98 -0.08 9.74 16 14 O -0.54 -13.04 15.56 5.56 0.09 -12.95 16 15 C -0.14 -1.84 3.80 -27.88 -0.11 -1.94 16 16 C -0.10 -1.20 3.71 -26.73 -0.10 -1.29 16 17 C 0.15 1.33 0.87 -130.90 -0.11 1.22 16 18 C -0.16 -1.17 8.53 37.16 0.32 -0.85 16 19 C -0.12 -0.88 6.21 -25.10 -0.16 -1.03 16 20 C -0.16 -1.21 6.85 -26.74 -0.18 -1.39 16 21 C 0.52 5.96 8.46 -10.72 -0.09 5.87 16 22 O -0.54 -8.52 18.03 5.55 0.10 -8.42 16 23 N -0.72 -7.05 5.37 -46.53 -0.25 -7.30 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 28 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.09 1.00 5.80 -51.93 -0.30 0.70 16 33 H 0.08 0.89 5.79 -51.93 -0.30 0.59 16 34 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 35 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.50 6.53 -51.93 -0.34 0.16 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.64 7.88 -51.93 -0.41 0.24 16 40 H 0.09 0.49 7.89 -51.93 -0.41 0.08 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.41 3.86 7.51 -40.82 -0.31 3.56 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -34.96 347.57 -7.07 -42.02 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.92 Total: 0.10 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.61 Total: 2.98 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.06 Total: -45.53 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.19 Total: -21.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.96 -7.07 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355615115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.992 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds