Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47175 * 2 1 4 4 C 1.46498 * 120.00251 * 270.00250 * 3 2 1 5 5 C 1.50700 * 109.46844 * 269.99857 * 4 3 2 6 6 H 1.07997 * 119.99966 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99617 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99703 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00164 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46935 * 89.99790 * 9 7 5 11 11 H 1.48499 * 109.46810 * 210.00028 * 9 7 5 12 12 H 1.48497 * 109.47066 * 329.99937 * 9 7 5 13 13 C 1.34776 * 119.99651 * 90.00203 * 3 2 1 14 14 O 1.21278 * 120.00042 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00201 * 359.97438 * 13 3 2 16 16 C 1.53004 * 109.47196 * 180.02562 * 15 13 3 17 17 C 1.52997 * 109.46928 * 179.97438 * 16 15 13 18 18 C 1.52997 * 110.22014 * 300.70139 * 17 16 15 19 19 C 1.54487 * 110.24561 * 178.76913 * 17 16 15 20 20 C 1.54624 * 101.76438 * 215.50003 * 19 17 16 21 21 C 1.51274 * 104.19859 * 24.79967 * 20 19 17 22 22 O 1.21284 * 124.94311 * 163.75197 * 21 20 19 23 23 N 1.34623 * 110.14849 * 343.76772 * 21 20 19 24 24 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47125 * 300.00164 * 1 2 3 26 26 H 1.08999 * 109.47176 * 59.99610 * 1 2 3 27 27 H 1.08994 * 109.46782 * 240.00234 * 2 1 3 28 28 H 1.08999 * 109.47176 * 120.00390 * 2 1 3 29 29 H 1.08997 * 109.47187 * 30.00171 * 4 3 2 30 30 H 1.09002 * 109.46939 * 150.00055 * 4 3 2 31 31 H 0.96994 * 119.99990 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46995 * 60.00517 * 15 13 3 33 33 H 1.08997 * 109.47190 * 300.00338 * 15 13 3 34 34 H 1.08999 * 109.46825 * 60.00292 * 16 15 13 35 35 H 1.08997 * 109.47228 * 300.00193 * 16 15 13 36 36 H 1.09002 * 109.47153 * 59.99948 * 18 17 16 37 37 H 1.09001 * 109.46832 * 300.00139 * 18 17 16 38 38 H 1.09004 * 109.47261 * 180.02562 * 18 17 16 39 39 H 1.09002 * 110.96417 * 333.61945 * 19 17 16 40 40 H 1.09002 * 110.96636 * 97.34236 * 19 17 16 41 41 H 1.09003 * 110.48375 * 143.48330 * 20 19 17 42 42 H 1.09000 * 110.48647 * 265.98208 * 20 19 17 43 43 H 0.97000 * 124.46439 * 179.53974 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 5.3911 2.1827 -3.2578 9 14 3.0128 3.4353 -3.9291 10 1 3.1163 4.8556 -3.5079 11 1 3.4057 3.3121 -5.3559 12 1 1.6131 2.9693 -3.7591 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1673 15 6 1.9914 1.3062 2.4723 16 6 2.3223 2.2437 3.6353 17 6 2.0662 1.5228 4.9602 18 6 0.6024 1.0870 5.0508 19 6 2.4243 2.4437 6.1479 20 6 2.9951 1.4330 7.1695 21 6 3.4824 0.2808 6.3190 22 8 4.2417 -0.5872 6.6944 23 7 2.9513 0.3587 5.0844 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5817 1.6879 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 5.7171 2.5732 -4.0837 32 1 2.6213 0.4185 2.5302 33 1 0.9433 1.0124 2.5299 34 1 1.6921 3.1311 3.5772 35 1 3.3703 2.5379 3.5780 36 1 0.3728 0.4112 4.2269 37 1 -0.0421 1.9641 4.9916 38 1 0.4334 0.5757 5.9985 39 1 3.1788 3.1758 5.8600 40 1 1.5352 2.9367 6.5410 41 1 3.8234 1.8762 7.7224 42 1 2.2149 1.1011 7.8544 43 1 3.1299 -0.2718 4.3692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355615116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -84.281919 kcal Electronic energy + Delta-G solvation = -22875.064766 eV Core-core repulsion = 19533.742819 eV Total energy + Delta-G solvation = -3341.321948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84276 -39.22219 -37.33028 -35.46212 -33.24033 -32.58132 -31.54868 -30.41009 -29.56613 -27.76553 -26.05125 -23.74994 -23.02012 -21.85262 -20.96805 -20.12765 -18.27735 -17.25975 -16.94126 -16.36689 -16.22074 -15.57528 -15.41914 -14.86670 -14.31407 -14.19570 -13.81163 -13.62853 -13.52795 -13.30332 -13.02931 -12.79785 -12.54092 -12.49162 -12.33914 -12.20756 -11.82948 -11.71838 -11.43022 -11.23093 -11.09589 -10.89931 -10.82947 -10.63911 -10.50145 -10.17987 -9.99136 -9.56450 -9.28100 -9.03824 -8.60810 -7.75803 -6.10463 -4.09398 2.47566 3.18207 3.27052 3.31540 3.33044 3.34617 3.73861 4.07996 4.22113 4.37551 4.46578 4.71532 4.74463 5.00046 5.11391 5.12544 5.17904 5.22971 5.28498 5.32948 5.44026 5.49302 5.53388 5.59546 5.61452 5.70082 5.71843 5.84922 5.96440 6.04750 6.10577 6.23841 6.34958 6.68675 6.69303 6.91492 6.92113 7.31696 7.59298 8.13113 8.22594 8.45015 8.90390 8.96062 9.49717 11.02986 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.003897 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.373066 B = 7184.008214 C = 7470.082213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.542 6.542 15 C -0.142 4.142 16 C -0.105 4.105 17 C 0.154 3.846 18 C -0.159 4.159 19 C -0.124 4.124 20 C -0.156 4.156 21 C 0.519 3.481 22 O -0.541 6.541 23 N -0.720 5.720 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 -2.675 16.913 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.325 5.325 4 C 0.095 3.905 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.419 6.419 15 C -0.183 4.183 16 C -0.143 4.143 17 C 0.068 3.932 18 C -0.217 4.217 19 C -0.162 4.162 20 C -0.196 4.196 21 C 0.306 3.694 22 O -0.418 6.418 23 N -0.376 5.376 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.399 -2.403 17.029 21.201 hybrid contribution -0.391 0.136 -1.163 1.235 sum -12.789 -2.267 15.865 20.504 Atomic orbital electron populations 1.22232 0.96778 1.01570 1.02201 1.21435 0.93360 0.83918 1.03089 1.47953 1.64039 1.13332 1.07138 1.19634 0.97269 0.93348 0.80200 1.21329 0.95365 1.32934 1.07133 0.90833 1.24866 0.94994 0.95811 0.97355 1.69897 1.15153 1.44955 1.23567 0.86845 0.81429 0.81594 0.79780 1.19911 1.21065 1.19105 1.20320 0.78214 0.86963 0.85153 1.90669 1.45682 1.18288 1.87289 1.21786 1.03137 0.99813 0.93525 1.21673 1.04148 0.98124 0.90380 1.21133 0.90202 0.85536 0.96373 1.22246 0.94522 1.02402 1.02542 1.22713 1.02604 0.97091 0.93744 1.22342 1.03109 0.95515 0.98634 1.20937 0.79213 0.86169 0.83117 1.90756 1.35778 1.39341 1.75889 1.46509 1.47600 1.29454 1.14062 0.91993 0.92985 0.92238 0.89788 0.91453 0.95362 0.94653 0.92549 0.89815 0.89115 0.89527 0.90130 0.91567 0.90889 0.92212 0.89410 0.88991 0.88110 0.87974 0.75128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -11.60 2.46 -175.06 -0.43 -12.03 16 4 C 0.22 5.18 4.23 -5.20 -0.02 5.16 16 5 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 9 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.51 9.59 7.67 -10.99 -0.08 9.50 16 14 O -0.54 -12.63 15.56 5.56 0.09 -12.55 16 15 C -0.14 -1.77 3.76 -27.88 -0.10 -1.88 16 16 C -0.10 -1.18 3.70 -26.73 -0.10 -1.28 16 17 C 0.15 1.30 0.87 -130.90 -0.11 1.19 16 18 C -0.16 -1.07 8.41 37.16 0.31 -0.75 16 19 C -0.12 -0.87 6.21 -25.10 -0.16 -1.02 16 20 C -0.16 -1.22 6.86 -26.75 -0.18 -1.41 16 21 C 0.52 6.15 8.44 -10.77 -0.09 6.06 16 22 O -0.54 -8.81 18.03 5.55 0.10 -8.71 16 23 N -0.72 -7.29 5.40 -46.57 -0.25 -7.54 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.55 7.22 -51.93 -0.37 0.18 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 29 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 30 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 33 H 0.09 0.90 5.52 -51.93 -0.29 0.61 16 34 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.07 0.45 6.49 -51.93 -0.34 0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.41 4.10 7.68 -40.82 -0.31 3.79 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -36.29 344.13 -6.73 -43.02 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.90 Total: 0.68 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.62 Total: 2.07 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.09 Total: -46.48 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.19 Total: -21.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.29 -6.73 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355615116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.263 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds