Wall clock time and date at job start Tue Mar 31 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47120 * 2 1 4 4 N 1.46506 * 109.46965 * 119.99410 * 2 1 3 5 5 C 1.34775 * 119.99969 * 274.99937 * 4 2 1 6 6 O 1.21593 * 120.00093 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00266 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47075 * 176.92939 * 8 7 5 10 10 C 1.50702 * 115.54987 * 294.82902 * 9 8 7 11 11 H 1.07994 * 119.99824 * 99.42400 * 10 9 8 12 12 C 1.37877 * 119.99813 * 279.69594 * 10 9 8 13 13 N 1.31512 * 120.00299 * 5.49064 * 12 10 9 14 14 Si 1.86795 * 119.99542 * 185.49077 * 12 10 9 15 15 H 1.48495 * 109.47418 * 60.00128 * 14 12 10 16 16 H 1.48505 * 109.47331 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47369 * 299.99744 * 14 12 10 18 18 C 1.52997 * 117.51717 * 80.53472 * 9 8 7 19 19 C 1.52996 * 117.49335 * 149.16311 * 9 8 7 20 20 C 1.52993 * 109.47580 * 239.99077 * 2 1 3 21 21 H 1.08991 * 110.44128 * 183.90726 * 20 2 1 22 22 C 1.54818 * 110.48501 * 61.22391 * 20 2 1 23 23 C 1.54998 * 102.09132 * 220.44908 * 22 20 2 24 24 O 1.44373 * 103.49326 * 37.02008 * 23 22 20 25 25 C 1.43745 * 106.97549 * 319.94126 * 24 23 22 26 26 H 1.08993 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47221 * 300.00889 * 1 2 3 28 28 H 1.08995 * 109.46743 * 60.00695 * 1 2 3 29 29 H 0.96998 * 120.00056 * 94.99806 * 4 2 1 30 30 H 0.96998 * 119.99981 * 359.97438 * 7 5 4 31 31 H 1.09001 * 109.47040 * 56.92682 * 8 7 5 32 32 H 1.09000 * 109.47013 * 296.93416 * 8 7 5 33 33 H 0.96996 * 120.00188 * 185.01906 * 13 12 10 34 34 H 1.08996 * 117.49980 * 214.97251 * 18 9 8 35 35 H 1.09001 * 117.49671 * 359.97438 * 18 9 8 36 36 H 1.08998 * 117.50236 * 359.97143 * 19 9 8 37 37 H 1.09004 * 117.49872 * 144.99681 * 19 9 8 38 38 H 1.09003 * 110.90492 * 338.64342 * 22 20 2 39 39 H 1.08990 * 110.90818 * 102.24539 * 22 20 2 40 40 H 1.09005 * 110.61317 * 278.51641 * 23 22 20 41 41 H 1.08998 * 110.61825 * 155.52781 * 23 22 20 42 42 H 1.09003 * 109.87744 * 267.08656 * 25 24 23 43 43 H 1.09000 * 109.87656 * 145.93895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1616 2.4118 7 7 2.5968 -0.6531 3.4576 8 6 2.7361 0.0777 4.7197 9 6 3.1880 -0.8853 5.8194 10 6 2.2030 -1.9670 6.1812 11 1 2.3211 -2.9618 5.7778 12 6 1.1478 -1.6851 7.0227 13 7 0.9380 -0.4502 7.4234 14 14 0.0164 -3.0573 7.5937 15 1 0.8055 -4.0732 8.3357 16 1 -1.0315 -2.4967 8.4843 17 1 -0.6250 -3.6930 6.4148 18 6 4.6762 -1.2339 5.8862 19 6 4.0571 -0.3168 6.9428 20 6 2.0401 -0.7214 -1.2490 21 1 3.1276 -0.7912 -1.2308 22 6 1.5626 0.0075 -2.5287 23 6 1.1933 -1.1766 -3.4582 24 8 0.6195 -2.1468 -2.5560 25 6 1.4112 -2.1241 -1.3564 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 2.2490 -1.6317 1.1529 30 1 2.8274 -1.5943 3.4141 31 1 1.7768 0.5170 4.9930 32 1 3.4773 0.8682 4.6018 33 1 0.2416 -0.2625 8.0720 34 1 4.9430 -2.2456 6.1917 35 1 5.3337 -0.7774 5.1462 36 1 4.3075 0.7432 6.8982 37 1 3.9166 -0.7251 7.9437 38 1 0.6893 0.6260 -2.3211 39 1 2.3665 0.6041 -2.9595 40 1 2.0847 -1.5796 -3.9389 41 1 0.4614 -0.8657 -4.2036 42 1 2.1957 -2.8785 -1.4158 43 1 0.7771 -2.3133 -0.4903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355761237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:56 Heat of formation + Delta-G solvation = -58.166972 kcal Electronic energy + Delta-G solvation = -22688.553193 eV Core-core repulsion = 19348.363674 eV Total energy + Delta-G solvation = -3340.189519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27391 -39.06892 -36.85081 -35.50980 -33.25089 -32.13143 -31.96158 -29.92143 -28.46034 -26.18812 -25.15060 -23.94391 -22.68520 -21.23066 -20.26712 -19.78760 -19.34186 -17.87708 -16.75930 -16.45601 -16.01042 -15.66063 -15.20649 -14.87835 -14.61151 -14.27815 -14.11870 -13.71583 -13.26817 -13.13710 -12.76653 -12.60526 -12.02498 -12.01757 -11.78114 -11.70539 -11.54828 -11.36468 -11.05199 -10.90538 -10.85113 -10.66849 -10.54187 -10.28338 -9.86574 -9.71563 -9.50216 -8.95155 -8.83771 -8.49093 -8.27184 -7.94249 -6.07490 -4.15795 3.18027 3.27854 3.34231 3.35130 3.69966 3.82787 4.28027 4.36736 4.47476 4.63476 4.81480 4.91489 4.98999 5.05665 5.22378 5.31680 5.35193 5.40743 5.44530 5.51269 5.59152 5.66341 5.80361 5.93758 6.02200 6.09653 6.33276 6.38665 6.48218 6.59763 6.61334 6.68056 6.83891 6.87885 7.06905 7.34887 7.40237 7.50619 7.61209 7.82540 8.34308 8.68836 8.85026 9.24232 9.51407 11.01101 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.003864 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.075392 B = 7244.585454 C = 7803.019374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.089 0.911 4 N -0.752 5.752 5 C 0.699 3.301 6 O -0.602 6.602 7 N -0.720 5.720 8 C 0.181 3.819 9 C 0.031 3.969 10 C -0.499 4.499 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.873 5.873 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.210 4.210 19 C -0.153 4.153 20 C -0.131 4.131 21 H 0.089 0.911 22 C -0.150 4.150 23 C 0.046 3.954 24 O -0.376 6.376 25 C 0.045 3.955 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.391 0.609 30 H 0.394 0.606 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -1.650 -17.998 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.107 0.893 4 N -0.408 5.408 5 C 0.399 3.601 6 O -0.482 6.482 7 N -0.372 5.372 8 C 0.058 3.942 9 C 0.030 3.970 10 C -0.537 4.537 11 H 0.077 0.923 12 C -0.130 4.130 13 N -0.509 5.509 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.247 4.247 19 C -0.191 4.191 20 C -0.150 4.150 21 H 0.108 0.892 22 C -0.188 4.188 23 C -0.030 4.030 24 O -0.295 6.295 25 C -0.032 4.032 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.227 0.773 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.203 -0.534 -17.859 18.002 hybrid contribution -0.188 -1.456 0.526 1.559 sum 2.015 -1.990 -17.333 17.563 Atomic orbital electron populations 1.22327 0.95449 1.02444 1.02427 1.20593 0.93928 0.96880 0.81901 0.89275 1.45203 1.73081 1.13342 1.09190 1.16030 0.78549 0.85169 0.80337 1.90869 1.57828 1.14724 1.84746 1.45136 1.69069 1.13883 1.09095 1.20849 1.00850 0.92298 0.80217 1.19040 0.87638 0.96466 0.93853 1.20311 1.08637 0.94728 1.30002 0.92328 1.24957 0.96669 0.95144 0.96212 1.69981 1.32399 1.17883 1.30635 0.86721 0.80508 0.82337 0.78771 1.20281 1.21275 1.20253 1.22980 0.98796 0.99640 1.03301 1.22526 1.05279 0.96032 0.95310 1.22868 1.01349 0.95531 0.95289 0.89230 1.23256 1.02594 0.98514 0.94460 1.23544 0.98447 0.87925 0.93102 1.88882 1.53494 1.60617 1.26509 1.23362 0.95161 0.95771 0.88906 0.92149 0.91597 0.91871 0.77560 0.77258 0.90656 0.95074 0.92809 0.90402 0.91613 0.91618 0.89935 0.89479 0.89979 0.92296 0.88996 0.92346 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.91 37.16 0.33 -1.79 16 2 C 0.17 2.12 2.34 -67.93 -0.16 1.96 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.75 -10.54 4.94 -58.67 -0.29 -10.83 16 5 C 0.70 13.40 8.53 -86.92 -0.74 12.66 16 6 O -0.60 -13.92 16.01 5.28 0.08 -13.84 16 7 N -0.72 -14.13 5.47 -65.22 -0.36 -14.49 16 8 C 0.18 4.18 5.50 -4.04 -0.02 4.16 16 9 C 0.03 0.72 1.29 -155.66 -0.20 0.52 16 10 C -0.50 -12.82 8.67 -34.44 -0.30 -13.11 16 11 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 12 C 0.07 1.98 5.42 -17.82 -0.10 1.88 16 13 N -0.87 -24.36 13.10 55.43 0.73 -23.64 16 14 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.21 -4.30 9.96 -26.73 -0.27 -4.56 16 19 C -0.15 -3.46 9.68 -26.73 -0.26 -3.72 16 20 C -0.13 -1.20 3.05 -89.09 -0.27 -1.47 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.15 -1.16 6.50 -24.72 -0.16 -1.32 16 23 C 0.05 0.37 7.72 38.21 0.29 0.66 16 24 O -0.38 -4.10 11.52 -35.23 -0.41 -4.51 16 25 C 0.04 0.43 6.25 37.73 0.24 0.66 16 26 H 0.06 0.74 6.19 -51.93 -0.32 0.42 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.68 6.22 -51.93 -0.32 0.35 16 29 H 0.39 4.48 7.99 -40.82 -0.33 4.16 16 30 H 0.39 6.96 8.44 -40.82 -0.34 6.61 16 31 H 0.08 2.03 8.13 -51.93 -0.42 1.61 16 32 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 38 H 0.09 0.70 5.95 -51.93 -0.31 0.39 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.94 5.78 -51.93 -0.30 0.64 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -30.74 347.65 -8.57 -39.31 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.93 Total: 10.60 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.61 Total: -3.48 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.08 Total: -48.95 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.32 Total: -18.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.74 -8.57 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355761237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.856 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds