Wall clock time and date at job start Tue Mar 31 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47120 * 2 1 4 4 N 1.46506 * 109.46965 * 119.99410 * 2 1 3 5 5 C 1.34775 * 119.99969 * 274.99937 * 4 2 1 6 6 O 1.21593 * 120.00093 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00266 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47075 * 176.92939 * 8 7 5 10 10 C 1.50702 * 115.54987 * 294.82902 * 9 8 7 11 11 H 1.07994 * 119.99824 * 99.42400 * 10 9 8 12 12 C 1.37877 * 119.99813 * 279.69594 * 10 9 8 13 13 N 1.31512 * 120.00299 * 5.49064 * 12 10 9 14 14 Si 1.86795 * 119.99542 * 185.49077 * 12 10 9 15 15 H 1.48495 * 109.47418 * 60.00128 * 14 12 10 16 16 H 1.48505 * 109.47331 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47369 * 299.99744 * 14 12 10 18 18 C 1.52997 * 117.51717 * 80.53472 * 9 8 7 19 19 C 1.52996 * 117.49335 * 149.16311 * 9 8 7 20 20 C 1.52993 * 109.47580 * 239.99077 * 2 1 3 21 21 H 1.08991 * 110.44128 * 183.90726 * 20 2 1 22 22 C 1.54818 * 110.48501 * 61.22391 * 20 2 1 23 23 C 1.54998 * 102.09132 * 220.44908 * 22 20 2 24 24 O 1.44373 * 103.49326 * 37.02008 * 23 22 20 25 25 C 1.43745 * 106.97549 * 319.94126 * 24 23 22 26 26 H 1.08993 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47221 * 300.00889 * 1 2 3 28 28 H 1.08995 * 109.46743 * 60.00695 * 1 2 3 29 29 H 0.96998 * 120.00056 * 94.99806 * 4 2 1 30 30 H 0.96998 * 119.99981 * 359.97438 * 7 5 4 31 31 H 1.09001 * 109.47040 * 56.92682 * 8 7 5 32 32 H 1.09000 * 109.47013 * 296.93416 * 8 7 5 33 33 H 0.96996 * 120.00188 * 185.01906 * 13 12 10 34 34 H 1.08996 * 117.49980 * 214.97251 * 18 9 8 35 35 H 1.09001 * 117.49671 * 359.97438 * 18 9 8 36 36 H 1.08998 * 117.50236 * 359.97143 * 19 9 8 37 37 H 1.09004 * 117.49872 * 144.99681 * 19 9 8 38 38 H 1.09003 * 110.90492 * 338.64342 * 22 20 2 39 39 H 1.08990 * 110.90818 * 102.24539 * 22 20 2 40 40 H 1.09005 * 110.61317 * 278.51641 * 23 22 20 41 41 H 1.08998 * 110.61825 * 155.52781 * 23 22 20 42 42 H 1.09003 * 109.87744 * 267.08656 * 25 24 23 43 43 H 1.09000 * 109.87656 * 145.93895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1616 2.4118 7 7 2.5968 -0.6531 3.4576 8 6 2.7361 0.0777 4.7197 9 6 3.1880 -0.8853 5.8194 10 6 2.2030 -1.9670 6.1812 11 1 2.3211 -2.9618 5.7778 12 6 1.1478 -1.6851 7.0227 13 7 0.9380 -0.4502 7.4234 14 14 0.0164 -3.0573 7.5937 15 1 0.8055 -4.0732 8.3357 16 1 -1.0315 -2.4967 8.4843 17 1 -0.6250 -3.6930 6.4148 18 6 4.6762 -1.2339 5.8862 19 6 4.0571 -0.3168 6.9428 20 6 2.0401 -0.7214 -1.2490 21 1 3.1276 -0.7912 -1.2308 22 6 1.5626 0.0075 -2.5287 23 6 1.1933 -1.1766 -3.4582 24 8 0.6195 -2.1468 -2.5560 25 6 1.4112 -2.1241 -1.3564 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 2.2490 -1.6317 1.1529 30 1 2.8274 -1.5943 3.4141 31 1 1.7768 0.5170 4.9930 32 1 3.4773 0.8682 4.6018 33 1 0.2416 -0.2625 8.0720 34 1 4.9430 -2.2456 6.1917 35 1 5.3337 -0.7774 5.1462 36 1 4.3075 0.7432 6.8982 37 1 3.9166 -0.7251 7.9437 38 1 0.6893 0.6260 -2.3211 39 1 2.3665 0.6041 -2.9595 40 1 2.0847 -1.5796 -3.9389 41 1 0.4614 -0.8657 -4.2036 42 1 2.1957 -2.8785 -1.4158 43 1 0.7771 -2.3133 -0.4903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355761237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:55 Heat of formation + Delta-G solvation = -79.342972 kcal Electronic energy + Delta-G solvation = -22689.471453 eV Core-core repulsion = 19348.363674 eV Total energy + Delta-G solvation = -3341.107779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34763 -40.28939 -38.56342 -36.68571 -34.93408 -33.98763 -33.12976 -30.81381 -29.31171 -27.98808 -26.99481 -24.91793 -23.45961 -22.94262 -21.67039 -21.21497 -20.72775 -19.33064 -18.11194 -17.45458 -17.17823 -16.85919 -16.64719 -16.29290 -15.95624 -15.79607 -15.52206 -14.94947 -14.81783 -14.37919 -14.12948 -13.78807 -13.50179 -13.35948 -12.97034 -12.87910 -12.85345 -12.75809 -12.51553 -12.38428 -12.14017 -12.02572 -11.66964 -11.56332 -11.49215 -11.22418 -10.81046 -10.55686 -10.45813 -10.27048 -10.03106 -9.57549 -8.09307 -6.21904 1.43785 1.44651 1.51326 1.82423 2.28368 2.43717 3.04195 3.20026 3.30985 3.53792 3.63047 3.74826 3.91541 4.19281 4.27336 4.28997 4.33628 4.35953 4.54130 4.58217 4.69104 4.75331 4.77499 4.82138 4.87034 4.91735 4.96926 5.00975 5.04952 5.10841 5.17452 5.28662 5.36662 5.59462 5.60679 5.63870 5.74872 5.81215 5.97507 6.17213 6.37999 6.85402 7.26572 7.47977 7.72316 8.98812 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.003864 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.075392 B = 7244.585454 C = 7803.019374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.072 0.928 4 N -0.731 5.731 5 C 0.696 3.304 6 O -0.645 6.645 7 N -0.715 5.715 8 C 0.199 3.801 9 C 0.007 3.993 10 C -0.502 4.502 11 H 0.063 0.937 12 C 0.025 3.975 13 N -0.907 5.907 14 Si 0.947 3.053 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.273 1.273 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.120 4.120 21 H 0.104 0.896 22 C -0.147 4.147 23 C 0.044 3.956 24 O -0.400 6.400 25 C 0.044 3.956 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.407 0.593 30 H 0.406 0.594 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -3.283 -19.976 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 H 0.090 0.910 4 N -0.387 5.387 5 C 0.396 3.604 6 O -0.528 6.528 7 N -0.368 5.368 8 C 0.074 3.926 9 C 0.006 3.994 10 C -0.540 4.540 11 H 0.081 0.919 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.773 3.227 15 H -0.194 1.194 16 H -0.219 1.219 17 H -0.198 1.198 18 C -0.210 4.210 19 C -0.203 4.203 20 C -0.140 4.140 21 H 0.122 0.878 22 C -0.185 4.185 23 C -0.032 4.032 24 O -0.320 6.320 25 C -0.032 4.032 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.241 0.759 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.322 -2.231 -19.883 20.281 hybrid contribution -0.527 -0.933 1.071 1.515 sum 2.794 -3.165 -18.811 19.279 Atomic orbital electron populations 1.22270 0.95728 1.02450 1.01648 1.20721 0.93673 0.96487 0.82445 0.90964 1.45054 1.71656 1.13962 1.08068 1.16207 0.78153 0.84753 0.81256 1.90840 1.59525 1.16849 1.85563 1.44910 1.69397 1.14232 1.08292 1.20386 0.98152 0.92447 0.81608 1.19038 0.89196 0.96677 0.94478 1.20653 1.08737 0.95375 1.29216 0.91854 1.25674 0.98232 0.96868 0.96784 1.70116 1.33216 1.19660 1.31500 0.85794 0.78681 0.79942 0.78264 1.19364 1.21884 1.19819 1.22971 0.96566 0.99641 1.01828 1.22485 1.06252 0.96854 0.94737 1.22794 1.01995 0.95237 0.93938 0.87816 1.23276 1.03041 0.98588 0.93637 1.23728 0.99375 0.87258 0.92872 1.88860 1.54383 1.61547 1.27208 1.23382 0.95260 0.96169 0.88435 0.91699 0.95153 0.89883 0.75669 0.75905 0.95437 0.95141 0.93312 0.89417 0.89183 0.91108 0.91696 0.89983 0.88090 0.90831 0.87811 0.90807 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.91 71.98 0.64 -3.41 16 2 C 0.17 4.05 2.34 44.99 0.11 4.15 16 3 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.73 -19.75 4.94 -457.80 -2.26 -22.01 16 5 C 0.70 26.71 8.53 179.06 1.53 28.24 16 6 O -0.65 -30.60 16.01 -4.01 -0.06 -30.66 16 7 N -0.72 -27.84 5.47 -478.51 -2.62 -30.46 16 8 C 0.20 9.31 5.50 86.38 0.48 9.78 16 9 C 0.01 0.32 1.29 -52.93 -0.07 0.25 16 10 C -0.50 -25.56 8.67 25.60 0.22 -25.34 16 11 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 12 C 0.03 1.34 5.42 84.66 0.46 1.80 16 13 N -0.91 -51.91 13.10 21.45 0.28 -51.63 16 14 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.17 -6.70 9.96 30.59 0.30 -6.39 16 19 C -0.16 -7.41 9.68 30.59 0.30 -7.11 16 20 C -0.12 -1.91 3.05 -9.80 -0.03 -1.94 16 21 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 22 C -0.15 -1.89 6.50 31.90 0.21 -1.68 16 23 C 0.04 0.56 7.72 72.67 0.56 1.12 16 24 O -0.40 -7.81 11.52 -148.98 -1.72 -9.53 16 25 C 0.04 0.74 6.25 72.35 0.45 1.19 16 26 H 0.06 1.54 6.19 -2.39 -0.01 1.53 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.71 6.22 -2.39 -0.01 1.69 16 29 H 0.41 8.53 7.99 -92.71 -0.74 7.79 16 30 H 0.41 13.76 8.44 -92.71 -0.78 12.98 16 31 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 34 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 38 H 0.08 1.14 5.95 -2.39 -0.01 1.13 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.52 5.78 -2.39 -0.01 1.51 16 Total: -1.00 -67.57 347.65 0.30 -67.27 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.51 Total: 31.86 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.15 Total: 0.67 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.60 Total: -104.09 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.78 Total: -40.19 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.57 0.30 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355761237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.068 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds