Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47147 * 2 1 4 4 N 1.46502 * 109.47158 * 240.00043 * 2 1 3 5 5 C 1.34773 * 119.99988 * 84.99973 * 4 2 1 6 6 O 1.21586 * 120.00042 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00304 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00534 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47283 * 181.05116 * 8 7 5 10 10 C 1.50703 * 115.55342 * 39.68089 * 9 8 7 11 11 H 1.07995 * 120.00027 * 264.53982 * 10 9 8 12 12 C 1.37875 * 119.99949 * 84.53219 * 10 9 8 13 13 N 1.31516 * 119.99924 * 352.92053 * 12 10 9 14 14 Si 1.86800 * 120.00066 * 172.92398 * 12 10 9 15 15 H 1.48493 * 109.47368 * 59.99676 * 14 12 10 16 16 H 1.48502 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46810 * 299.99532 * 14 12 10 18 18 C 1.53002 * 117.49916 * 253.97474 * 9 8 7 19 19 C 1.53003 * 117.49805 * 185.35053 * 9 8 7 20 20 C 1.52995 * 109.47361 * 119.99982 * 2 1 3 21 21 H 1.09002 * 110.80866 * 60.70070 * 20 2 1 22 22 C 1.54818 * 110.90887 * 297.07424 * 20 2 1 23 23 C 1.54098 * 104.18585 * 220.91864 * 22 20 2 24 24 O 1.43745 * 107.29652 * 357.96911 * 23 22 20 25 25 C 1.44419 * 107.00054 * 26.48611 * 24 23 22 26 26 H 1.09000 * 109.47485 * 60.00190 * 1 2 3 27 27 H 1.09001 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47408 * 300.00201 * 1 2 3 29 29 H 0.97001 * 120.00323 * 265.27361 * 4 2 1 30 30 H 0.97007 * 119.99733 * 359.97438 * 7 5 4 31 31 H 1.08993 * 109.46879 * 301.05128 * 8 7 5 32 32 H 1.09003 * 109.46981 * 61.05056 * 8 7 5 33 33 H 0.97003 * 119.99848 * 185.03272 * 13 12 10 34 34 H 1.08997 * 117.50075 * 359.97438 * 18 9 8 35 35 H 1.09004 * 117.50112 * 145.02045 * 18 9 8 36 36 H 1.09005 * 117.49650 * 214.97766 * 19 9 8 37 37 H 1.08990 * 117.50037 * 0.02562 * 19 9 8 38 38 H 1.09004 * 110.48253 * 339.59146 * 22 20 2 39 39 H 1.08993 * 110.48407 * 102.10986 * 22 20 2 40 40 H 1.09001 * 109.87494 * 117.39141 * 23 22 20 41 41 H 1.08992 * 109.88042 * 238.54068 * 23 22 20 42 42 H 1.08999 * 110.65216 * 201.48267 * 25 24 23 43 43 H 1.09010 * 110.60141 * 78.47313 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1616 -2.4116 7 7 2.5957 -0.6537 -3.4577 8 6 2.7351 0.0770 -4.7198 9 6 3.2341 -0.8755 -5.8082 10 6 2.6406 -2.2605 -5.7820 11 1 3.1627 -3.0623 -5.2811 12 6 1.4310 -2.5039 -6.3972 13 7 0.7286 -1.5048 -6.8851 14 14 0.7897 -4.2528 -6.5377 15 1 0.6239 -4.8298 -5.1795 16 1 -0.5208 -4.2448 -7.2361 17 1 1.7565 -5.0739 -7.3098 18 6 4.6921 -0.7396 -6.2518 19 6 3.5647 -0.2744 -7.1758 20 6 2.0400 -0.7212 1.2492 21 1 1.6989 -1.7564 1.2650 22 6 1.6036 0.0238 2.5342 23 6 2.8430 -0.0407 3.4475 24 8 3.8484 -0.7958 2.7509 25 6 3.5855 -0.6467 1.3387 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2452 -1.6327 -1.1537 30 1 2.8265 -1.5949 -3.4142 31 1 1.7681 0.4868 -5.0111 32 1 3.4505 0.8895 -4.5922 33 1 -0.1546 -1.6665 -7.2523 34 1 5.2957 0.0287 -5.7687 35 1 5.2223 -1.6521 -6.5247 36 1 3.3532 -0.8809 -8.0565 37 1 3.4271 0.7996 -7.3000 38 1 1.3504 1.0595 2.3073 39 1 0.7575 -0.4817 2.9996 40 1 3.2085 0.9665 3.6480 41 1 2.5883 -0.5378 4.3835 42 1 4.0423 -1.4600 0.7747 43 1 3.9446 0.3185 0.9815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355761240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = -63.635225 kcal Electronic energy + Delta-G solvation = -22718.566029 eV Core-core repulsion = 19378.139389 eV Total energy + Delta-G solvation = -3340.426640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06552 -39.01680 -36.84269 -35.54035 -33.19704 -32.10784 -32.00209 -29.69849 -28.90971 -26.09917 -25.18317 -23.21782 -22.64267 -21.15982 -20.45943 -20.14032 -19.39642 -17.61196 -16.97601 -16.38137 -15.88636 -15.38673 -15.19175 -14.79907 -14.63768 -14.17378 -13.89713 -13.74733 -13.17572 -13.03859 -12.92489 -12.61379 -12.51844 -11.94494 -11.71416 -11.58545 -11.57060 -11.36943 -11.03658 -10.96391 -10.92451 -10.70249 -10.57064 -10.23752 -9.86826 -9.71186 -9.45616 -8.95553 -8.80694 -8.52386 -8.28526 -7.82012 -6.11060 -4.20464 3.22323 3.24039 3.29897 3.31146 3.74625 3.88570 4.29280 4.31539 4.50173 4.68846 4.84543 4.93086 5.08153 5.16116 5.19503 5.34128 5.35335 5.44227 5.49842 5.57532 5.63883 5.69361 5.74822 5.87076 6.05489 6.10760 6.32639 6.32984 6.50400 6.59208 6.65605 6.73054 6.87035 6.92193 7.09693 7.34673 7.41713 7.47460 7.68067 7.77087 8.32563 8.77742 8.82352 9.31000 9.46683 10.96543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.004012 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.119309 B = 6977.956661 C = 7391.922181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.088 0.912 4 N -0.751 5.751 5 C 0.699 3.301 6 O -0.609 6.609 7 N -0.712 5.712 8 C 0.184 3.816 9 C 0.029 3.971 10 C -0.505 4.505 11 H 0.059 0.941 12 C 0.078 3.922 13 N -0.869 5.869 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.211 4.211 19 C -0.152 4.152 20 C -0.129 4.129 21 H 0.090 0.910 22 C -0.147 4.147 23 C 0.047 3.953 24 O -0.381 6.381 25 C 0.054 3.946 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.393 0.607 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 0.830 16.196 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.106 0.894 4 N -0.408 5.408 5 C 0.398 3.602 6 O -0.489 6.489 7 N -0.365 5.365 8 C 0.060 3.940 9 C 0.029 3.971 10 C -0.542 4.542 11 H 0.078 0.922 12 C -0.127 4.127 13 N -0.504 5.504 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.190 4.190 20 C -0.149 4.149 21 H 0.109 0.891 22 C -0.185 4.185 23 C -0.030 4.030 24 O -0.300 6.300 25 C -0.023 4.023 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.236 0.764 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.361 1.857 16.027 16.191 hybrid contribution -0.561 -1.707 -0.296 1.821 sum 0.800 0.150 15.731 15.752 Atomic orbital electron populations 1.22225 0.95489 1.02091 1.02481 1.20596 0.93837 0.96733 0.81950 0.89427 1.45165 1.73152 1.13368 1.09084 1.16036 0.78617 0.85107 0.80410 1.90847 1.58294 1.14829 1.84901 1.45128 1.68593 1.14282 1.08511 1.20691 0.99935 0.92067 0.81335 1.19030 0.91018 0.95460 0.91637 1.20238 1.05558 0.92262 1.36185 0.92242 1.24975 0.96778 0.96606 0.94354 1.69972 1.10941 1.30621 1.38893 0.86721 0.78118 0.85142 0.78335 1.20285 1.21315 1.20174 1.23086 0.93044 1.01341 1.07361 1.22498 1.02323 0.98162 0.96050 1.23040 0.96333 1.00979 0.94524 0.89123 1.22949 0.98731 1.01851 0.94970 1.23153 0.87600 0.96287 0.96000 1.88872 1.51419 1.71788 1.17929 1.23623 0.94021 1.02323 0.82318 0.91527 0.92605 0.92087 0.77377 0.76433 0.91767 0.94887 0.92782 0.91597 0.90452 0.89953 0.91672 0.90087 0.90159 0.92401 0.89998 0.88733 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.30 37.15 0.35 -1.63 16 2 C 0.17 2.14 1.98 -67.94 -0.13 2.01 16 3 H 0.09 1.23 7.57 -51.93 -0.39 0.84 16 4 N -0.75 -10.76 4.85 -58.68 -0.28 -11.05 16 5 C 0.70 13.51 8.53 -86.92 -0.74 12.77 16 6 O -0.61 -13.95 16.01 5.29 0.08 -13.87 16 7 N -0.71 -14.36 5.34 -65.23 -0.35 -14.71 16 8 C 0.18 4.19 5.75 -4.04 -0.02 4.17 16 9 C 0.03 0.68 1.71 -155.66 -0.27 0.42 16 10 C -0.50 -12.59 7.43 -34.44 -0.26 -12.85 16 11 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 12 C 0.08 2.01 5.39 -17.82 -0.10 1.92 16 13 N -0.87 -23.76 12.97 55.43 0.72 -23.04 16 14 Si 0.89 20.05 29.55 -169.99 -5.02 15.03 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 C -0.21 -4.41 9.88 -26.73 -0.26 -4.67 16 19 C -0.15 -3.46 9.51 -26.73 -0.25 -3.72 16 20 C -0.13 -1.24 2.73 -88.61 -0.24 -1.48 16 21 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.18 5.66 -25.20 -0.14 -1.32 16 23 C 0.05 0.40 7.70 37.73 0.29 0.69 16 24 O -0.38 -4.42 11.52 -35.23 -0.41 -4.83 16 25 C 0.05 0.57 6.96 38.21 0.27 0.83 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.59 7.25 -51.93 -0.38 0.21 16 29 H 0.39 4.75 8.62 -40.82 -0.35 4.39 16 30 H 0.40 7.59 7.47 -40.82 -0.30 7.29 16 31 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 33 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 34 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.72 8.05 -51.92 -0.42 0.31 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -29.91 352.43 -8.74 -38.65 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.27 Total: 11.37 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.52 Total: -2.86 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.09 Total: -48.80 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.32 Total: -18.70 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.91 -8.74 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355761240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.986 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds