Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46392 * 2 1 4 4 N 1.46496 * 109.47429 * 120.00019 * 2 1 3 5 5 C 1.34777 * 120.00042 * 275.00373 * 4 2 1 6 6 O 1.21286 * 120.00302 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00183 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47121 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47197 * 179.97438 * 8 7 5 10 10 H 1.08009 * 119.99883 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00041 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99836 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46988 * 90.00189 * 13 11 9 15 15 H 1.48502 * 109.47125 * 210.00092 * 13 11 9 16 16 H 1.48502 * 109.47292 * 330.00476 * 13 11 9 17 17 C 1.50697 * 109.47002 * 240.00211 * 2 1 3 18 18 O 1.21279 * 120.00089 * 265.19679 * 17 2 1 19 19 N 1.34780 * 119.99882 * 85.19532 * 17 2 1 20 20 C 1.46924 * 120.62936 * 174.81580 * 19 17 2 21 21 C 1.53197 * 108.77763 * 126.36690 * 20 19 17 22 22 C 1.53045 * 109.30628 * 54.63473 * 21 20 19 23 23 C 1.53035 * 109.54382 * 298.63498 * 22 21 20 24 24 C 1.46924 * 120.63457 * 354.79607 * 19 17 2 25 25 H 1.08999 * 109.46997 * 185.01533 * 1 2 3 26 26 H 1.09001 * 109.47263 * 305.01189 * 1 2 3 27 27 H 1.09000 * 109.47929 * 65.01558 * 1 2 3 28 28 H 0.97001 * 119.99832 * 94.99907 * 4 2 1 29 29 H 1.09008 * 109.46504 * 299.99504 * 7 5 4 30 30 H 1.08992 * 109.47731 * 59.99200 * 7 5 4 31 31 H 1.08997 * 109.47525 * 299.99191 * 8 7 5 32 32 H 1.08999 * 109.47548 * 59.99718 * 8 7 5 33 33 H 0.96999 * 119.99935 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.58826 * 6.58358 * 20 19 17 35 35 H 1.08998 * 109.59274 * 246.15869 * 20 19 17 36 36 H 1.08996 * 109.49805 * 174.58403 * 21 20 19 37 37 H 1.08994 * 109.49725 * 294.69393 * 21 20 19 38 38 H 1.08999 * 109.45792 * 58.66158 * 22 21 20 39 39 H 1.09001 * 109.45584 * 178.61240 * 22 21 20 40 40 H 1.08997 * 109.50091 * 181.31500 * 23 22 21 41 41 H 1.08999 * 109.49524 * 301.41870 * 23 22 21 42 42 H 1.09002 * 109.58734 * 113.83905 * 24 19 17 43 43 H 1.08999 * 109.58476 * 353.41670 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1586 2.4116 7 6 2.6500 -0.7285 3.5874 8 6 2.7019 0.2547 4.7584 9 6 3.2043 -0.4556 5.9890 10 1 3.4613 -1.5036 5.9404 11 6 3.3368 0.2324 7.1764 12 7 3.0244 1.5085 7.2354 13 14 3.9588 -0.6484 8.7018 14 1 5.4390 -0.5450 8.7641 15 1 3.3675 -0.0215 9.9111 16 1 3.5647 -2.0789 8.6427 17 6 2.0323 -0.7104 -1.2305 18 8 2.3173 -1.8880 -1.1770 19 7 2.1647 -0.0370 -2.3905 20 6 2.7588 -0.6842 -3.5681 21 6 1.7923 -0.5432 -4.7484 22 6 1.4508 0.9352 -4.9489 23 6 0.7626 1.4764 -3.6937 24 6 1.7174 1.3581 -2.5015 25 1 -0.3633 -1.0237 0.0898 26 1 -0.3634 0.5896 0.8417 27 1 -0.3635 0.4340 -0.9314 28 1 2.2491 -1.6317 1.1525 29 1 1.9777 -1.5508 3.8324 30 1 3.6492 -1.1203 3.3979 31 1 3.3743 1.0768 4.5132 32 1 1.7028 0.6469 4.9482 33 1 3.1172 1.9924 8.0709 34 1 2.9276 -1.7405 -3.3584 35 1 3.7055 -0.2021 -3.8115 36 1 2.2613 -0.9339 -5.6513 37 1 0.8801 -1.1022 -4.5404 38 1 2.3662 1.4977 -5.1323 39 1 0.7826 1.0408 -5.8035 40 1 0.4988 2.5229 -3.8460 41 1 -0.1399 0.8982 -3.4957 42 1 2.5793 2.0069 -2.6578 43 1 1.1991 1.6495 -1.5880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360047054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -93.667625 kcal Electronic energy + Delta-G solvation = -22366.167886 eV Core-core repulsion = 19024.438943 eV Total energy + Delta-G solvation = -3341.728943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75980 -39.05364 -37.64377 -34.90830 -33.42009 -33.29094 -31.74821 -31.13964 -29.96132 -26.22791 -25.72213 -24.20558 -23.32972 -21.77519 -20.89587 -19.79225 -19.13796 -17.65621 -16.80715 -16.49379 -15.62817 -15.52663 -15.25519 -14.86527 -14.80745 -14.43392 -14.37667 -14.19698 -13.63556 -13.58223 -13.12599 -12.78361 -12.66153 -12.38975 -12.21012 -12.04805 -11.69742 -11.61435 -11.38437 -11.13514 -11.11055 -10.98334 -10.90486 -10.57804 -9.94448 -9.91276 -9.64709 -9.18201 -9.01560 -9.00036 -8.84920 -8.29643 -5.94009 -3.97972 2.31976 2.57299 3.23316 3.35483 3.41278 3.44195 3.57945 4.12907 4.33653 4.45336 4.49951 4.51621 4.66820 4.88189 4.96527 5.02184 5.07836 5.13256 5.33985 5.38460 5.40506 5.41073 5.43753 5.51060 5.60856 5.65236 5.67107 5.79455 5.89556 6.07042 6.17775 6.26972 6.29748 6.62897 6.92565 7.05649 7.76969 7.85317 7.88683 7.90930 8.09319 8.41214 8.75757 9.10430 9.65431 11.16996 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042426 B = 0.002875 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.818007 B = 9737.433763 C =10031.441082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.107 0.893 4 N -0.729 5.729 5 C 0.515 3.485 6 O -0.536 6.536 7 C -0.129 4.129 8 C 0.038 3.962 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.518 3.482 18 O -0.536 6.536 19 N -0.610 5.610 20 C 0.109 3.891 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.135 4.135 24 C 0.099 3.901 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.407 0.593 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -1.792 -26.359 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.125 0.875 4 N -0.386 5.386 5 C 0.303 3.697 6 O -0.411 6.411 7 C -0.169 4.169 8 C 0.000 4.000 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.306 3.694 18 O -0.412 6.412 19 N -0.345 5.345 20 C -0.013 4.013 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.174 4.174 24 C -0.024 4.024 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.243 0.757 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.410 -1.412 -26.144 26.551 hybrid contribution 0.439 -0.768 0.694 1.125 sum -3.971 -2.180 -25.450 25.850 Atomic orbital electron populations 1.22141 0.92965 1.03474 1.03132 1.20696 0.95761 0.98006 0.83914 0.87506 1.46110 1.69288 1.14708 1.08447 1.21628 0.76177 0.87567 0.84278 1.90654 1.49241 1.16328 1.84858 1.21874 1.01096 1.01098 0.92826 1.18902 0.98377 0.93294 0.89419 1.21238 1.44234 0.96376 0.94602 0.92571 1.25022 0.95575 0.94858 0.98950 1.69998 1.48224 1.08146 1.26559 0.86589 0.78943 0.79759 0.82642 1.20686 1.21241 1.19876 1.20812 0.77027 0.87096 0.84510 1.90675 1.50327 1.15583 1.84613 1.48051 1.61760 1.13570 1.11091 1.21619 0.95540 0.99843 0.84275 1.21916 1.00192 0.97076 0.98085 1.21526 1.00852 0.95839 0.97618 1.21926 0.98680 1.02032 0.94727 1.21912 0.98589 0.81867 1.00036 0.91605 0.90236 0.91640 0.75680 0.90034 0.90096 0.95815 0.95764 0.92984 0.88863 0.91380 0.90690 0.91460 0.91629 0.91585 0.90327 0.91300 0.90841 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.16 37.16 0.34 -1.49 16 2 C 0.13 1.66 2.11 -69.09 -0.15 1.52 16 3 H 0.11 1.45 6.18 -51.93 -0.32 1.13 16 4 N -0.73 -11.40 5.05 -54.94 -0.28 -11.68 16 5 C 0.51 10.09 7.79 -10.99 -0.09 10.00 16 6 O -0.54 -12.29 15.64 5.55 0.09 -12.21 16 7 C -0.13 -2.70 5.64 -27.89 -0.16 -2.85 16 8 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 9 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 10 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 13 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.52 6.62 6.90 -10.99 -0.08 6.55 16 18 O -0.54 -8.31 15.42 5.56 0.09 -8.22 16 19 N -0.61 -6.00 2.97 -172.76 -0.51 -6.51 16 20 C 0.11 0.92 6.44 -3.71 -0.02 0.90 16 21 C -0.13 -0.85 6.08 -26.61 -0.16 -1.01 16 22 C -0.12 -0.65 5.88 -26.69 -0.16 -0.80 16 23 C -0.14 -0.78 6.08 -26.61 -0.16 -0.94 16 24 C 0.10 0.74 5.91 -3.71 -0.02 0.71 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 28 H 0.41 5.94 7.78 -40.82 -0.32 5.62 16 29 H 0.08 1.57 8.14 -51.92 -0.42 1.14 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.09 0.93 7.00 -51.93 -0.36 0.57 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.70 4.88 -51.93 -0.25 0.45 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -34.80 347.03 -7.94 -42.74 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.08 Total: 0.98 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.18 Total: -0.35 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.05 Total: -45.04 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.17 Total: -20.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.80 -7.94 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360047054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.931 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds