Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47400 * 2 1 4 4 C 1.34777 * 120.00408 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99617 * 354.76381 * 4 3 2 6 6 C 1.50696 * 120.00099 * 174.76499 * 4 3 2 7 7 C 1.53003 * 112.85051 * 65.86994 * 6 4 3 8 8 N 1.46501 * 109.47290 * 56.74603 * 7 6 4 9 9 C 1.34775 * 120.00228 * 175.39252 * 8 7 6 10 10 O 1.21280 * 120.00284 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99926 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46830 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00266 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00018 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00537 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99803 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47083 * 89.99897 * 17 15 13 19 19 H 1.48501 * 109.46773 * 210.00206 * 17 15 13 20 20 H 1.48496 * 109.46919 * 329.99693 * 17 15 13 21 21 C 1.53780 * 113.61758 * 197.06308 * 6 4 3 22 22 C 1.53953 * 87.01604 * 89.22963 * 21 6 4 23 23 C 1.53772 * 113.61470 * 294.67333 * 6 4 3 24 24 H 1.08996 * 109.47101 * 59.99798 * 1 2 3 25 25 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47046 * 299.99602 * 1 2 3 27 27 H 1.09006 * 109.47291 * 239.99719 * 2 1 3 28 28 H 1.09006 * 109.47100 * 120.00184 * 2 1 3 29 29 H 0.97007 * 119.99571 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47027 * 296.75006 * 7 6 4 31 31 H 1.08999 * 109.47637 * 176.74707 * 7 6 4 32 32 H 0.97004 * 119.99572 * 355.65977 * 8 7 6 33 33 H 1.09001 * 109.47223 * 299.99229 * 11 9 8 34 34 H 1.08997 * 109.47252 * 59.99471 * 11 9 8 35 35 H 1.08998 * 109.47100 * 299.99330 * 12 11 9 36 36 H 1.08997 * 109.47371 * 59.99867 * 12 11 9 37 37 H 0.96994 * 120.00135 * 180.02562 * 16 15 13 38 38 H 1.09001 * 113.61872 * 203.75013 * 21 6 4 39 39 H 1.09006 * 113.60922 * 334.65723 * 21 6 4 40 40 H 1.09007 * 113.53846 * 270.81137 * 22 21 6 41 41 H 1.08997 * 113.66406 * 139.93985 * 22 21 6 42 42 H 1.08996 * 113.62169 * 25.35064 * 23 6 4 43 43 H 1.09005 * 113.61600 * 156.25239 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1308 0.7099 0.0949 6 6 3.8467 3.0429 -0.1196 7 6 3.4810 3.9072 1.0888 8 7 3.9992 3.2844 2.3094 9 6 3.8773 3.9174 3.4930 10 8 3.3390 5.0028 3.5476 11 6 4.4110 3.2770 4.7485 12 6 4.1466 4.1968 5.9422 13 6 4.6797 3.5561 7.1977 14 1 5.1587 2.5895 7.1492 15 6 4.5549 4.2037 8.4086 16 7 5.0197 3.6444 9.5044 17 14 3.7257 5.8755 8.4926 18 1 2.2695 5.6948 8.7210 19 1 4.3083 6.6613 9.6099 20 1 3.9402 6.5992 7.2139 21 6 5.3286 3.1383 -0.5191 22 6 4.8513 3.1305 -1.9828 23 6 3.5189 3.7017 -1.4698 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 0.0004 30 1 2.3966 3.9949 1.1580 31 1 3.9190 4.8985 0.9726 32 1 4.4336 2.4182 2.2651 33 1 3.9127 2.3209 4.9088 34 1 5.4839 3.1148 4.6458 35 1 4.6453 5.1527 5.7817 36 1 3.0737 4.3594 6.0450 37 1 4.9315 4.0998 10.3563 38 1 5.8024 4.0731 -0.2193 39 1 5.9122 2.2596 -0.2446 40 1 4.7633 2.1301 -2.4067 41 1 5.4019 3.8169 -2.6261 42 1 2.6437 3.2774 -1.9618 43 1 3.4970 4.7908 -1.4305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360456325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = -74.204791 kcal Electronic energy + Delta-G solvation = -22431.626249 eV Core-core repulsion = 19090.741279 eV Total energy + Delta-G solvation = -3340.884971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16625 -39.08573 -37.90847 -35.55548 -34.29016 -33.45096 -31.34924 -30.99230 -28.74931 -26.12759 -25.91015 -24.34309 -22.92345 -21.77052 -21.05447 -19.80509 -19.33802 -17.37933 -16.87814 -16.49232 -16.23131 -15.78202 -15.52908 -15.28457 -15.03991 -14.58641 -14.05275 -13.85461 -13.80341 -13.28218 -13.00773 -12.95393 -12.63151 -12.54053 -12.38035 -12.20087 -11.98841 -11.82134 -11.40047 -11.27639 -10.94580 -10.78909 -10.65626 -10.14143 -10.03214 -10.00523 -9.76938 -9.38037 -9.23385 -9.14527 -8.89685 -8.48742 -6.00819 -3.99452 2.31926 2.81628 3.12512 3.38096 3.39061 3.45423 3.56365 4.07425 4.23897 4.32758 4.44087 4.52546 4.53039 4.70158 4.74746 4.99047 5.03374 5.31541 5.32255 5.34496 5.38808 5.42233 5.45890 5.55788 5.56882 5.67598 5.72253 5.79411 5.83023 6.03410 6.11675 6.12633 6.13276 6.57857 6.72385 7.16804 7.38205 7.45789 7.74406 7.81649 7.92715 8.52312 8.65481 9.02674 9.62113 11.12097 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003617 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.408312 B = 7739.730060 C = 8316.024225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.727 5.727 4 C 0.541 3.459 5 O -0.532 6.532 6 C -0.126 4.126 7 C 0.141 3.859 8 N -0.742 5.742 9 C 0.512 3.488 10 O -0.542 6.542 11 C -0.123 4.123 12 C 0.003 3.997 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.117 4.117 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.402 0.598 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 -3.930 -26.602 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.380 5.380 4 C 0.326 3.674 5 O -0.408 6.408 6 C -0.129 4.129 7 C 0.017 3.983 8 N -0.396 5.396 9 C 0.301 3.699 10 O -0.418 6.418 11 C -0.163 4.163 12 C -0.035 4.035 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.153 4.153 22 C -0.179 4.179 23 C -0.156 4.156 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.236 0.764 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.497 -3.800 -26.305 27.360 hybrid contribution -0.625 0.704 0.180 0.958 sum -7.122 -3.096 -26.125 27.255 Atomic orbital electron populations 1.22010 0.94312 1.03353 1.02671 1.21326 0.94392 0.82756 1.02504 1.45988 1.07087 1.09108 1.75786 1.19850 0.82216 0.89907 0.75420 1.90716 1.55413 1.45947 1.48710 1.22354 1.00431 0.93149 0.96996 1.21149 0.99155 0.95918 0.82089 1.46187 1.62587 1.23921 1.06910 1.21531 0.78084 0.85360 0.84958 1.90645 1.43264 1.21225 1.86669 1.21673 1.01717 1.01103 0.91790 1.19361 0.97235 0.95015 0.91920 1.21128 1.38586 1.06188 0.90359 0.90930 1.24975 0.94986 0.97713 0.95572 1.69913 1.46784 1.38873 0.98714 0.86791 0.79886 0.84767 0.78081 1.20274 1.21444 1.18537 1.22905 0.93228 1.03799 0.95384 1.22878 0.96545 1.01516 0.96940 1.22921 0.98692 1.01159 0.92782 0.92035 0.90688 0.91699 0.91581 0.91173 0.76413 0.91756 0.90276 0.76440 0.89701 0.89535 0.95817 0.96337 0.92736 0.88898 0.89584 0.90101 0.90737 0.90879 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.03 37.16 0.37 -0.52 16 2 C 0.11 0.89 6.40 -4.05 -0.03 0.86 16 3 N -0.73 -6.12 5.55 -60.29 -0.33 -6.45 16 4 C 0.54 5.80 5.65 -10.99 -0.06 5.74 16 5 O -0.53 -7.53 15.95 5.56 0.09 -7.44 16 6 C -0.13 -1.15 0.83 -154.85 -0.13 -1.28 16 7 C 0.14 1.59 5.00 -4.04 -0.02 1.57 16 8 N -0.74 -10.40 5.37 -60.29 -0.32 -10.72 16 9 C 0.51 9.48 7.83 -10.98 -0.09 9.40 16 10 O -0.54 -11.92 15.98 5.56 0.09 -11.83 16 11 C -0.12 -2.47 5.64 -27.88 -0.16 -2.63 16 12 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 13 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 17 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 21 C -0.12 -1.06 7.11 -25.83 -0.18 -1.24 16 22 C -0.14 -1.05 7.81 -25.83 -0.20 -1.25 16 23 C -0.12 -0.79 7.22 -25.93 -0.19 -0.97 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.40 2.61 8.48 -40.82 -0.35 2.27 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.40 5.30 7.94 -40.82 -0.32 4.98 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 36 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.09 0.93 7.34 -51.93 -0.38 0.55 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -35.62 355.56 -7.53 -43.15 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.31 Total: 1.41 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.20 Total: -4.01 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.11 Total: -44.75 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.62 -7.53 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360456325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.054 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds