Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47400 * 2 1 4 4 C 1.34777 * 120.00408 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99617 * 354.76381 * 4 3 2 6 6 C 1.50696 * 120.00099 * 174.76499 * 4 3 2 7 7 C 1.53003 * 112.85051 * 65.86994 * 6 4 3 8 8 N 1.46501 * 109.47290 * 56.74603 * 7 6 4 9 9 C 1.34775 * 120.00228 * 175.39252 * 8 7 6 10 10 O 1.21280 * 120.00284 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99926 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46830 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00266 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00018 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00537 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99803 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47083 * 89.99897 * 17 15 13 19 19 H 1.48501 * 109.46773 * 210.00206 * 17 15 13 20 20 H 1.48496 * 109.46919 * 329.99693 * 17 15 13 21 21 C 1.53780 * 113.61758 * 197.06308 * 6 4 3 22 22 C 1.53953 * 87.01604 * 89.22963 * 21 6 4 23 23 C 1.53772 * 113.61470 * 294.67333 * 6 4 3 24 24 H 1.08996 * 109.47101 * 59.99798 * 1 2 3 25 25 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47046 * 299.99602 * 1 2 3 27 27 H 1.09006 * 109.47291 * 239.99719 * 2 1 3 28 28 H 1.09006 * 109.47100 * 120.00184 * 2 1 3 29 29 H 0.97007 * 119.99571 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47027 * 296.75006 * 7 6 4 31 31 H 1.08999 * 109.47637 * 176.74707 * 7 6 4 32 32 H 0.97004 * 119.99572 * 355.65977 * 8 7 6 33 33 H 1.09001 * 109.47223 * 299.99229 * 11 9 8 34 34 H 1.08997 * 109.47252 * 59.99471 * 11 9 8 35 35 H 1.08998 * 109.47100 * 299.99330 * 12 11 9 36 36 H 1.08997 * 109.47371 * 59.99867 * 12 11 9 37 37 H 0.96994 * 120.00135 * 180.02562 * 16 15 13 38 38 H 1.09001 * 113.61872 * 203.75013 * 21 6 4 39 39 H 1.09006 * 113.60922 * 334.65723 * 21 6 4 40 40 H 1.09007 * 113.53846 * 270.81137 * 22 21 6 41 41 H 1.08997 * 113.66406 * 139.93985 * 22 21 6 42 42 H 1.08996 * 113.62169 * 25.35064 * 23 6 4 43 43 H 1.09005 * 113.61600 * 156.25239 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1308 0.7099 0.0949 6 6 3.8467 3.0429 -0.1196 7 6 3.4810 3.9072 1.0888 8 7 3.9992 3.2844 2.3094 9 6 3.8773 3.9174 3.4930 10 8 3.3390 5.0028 3.5476 11 6 4.4110 3.2770 4.7485 12 6 4.1466 4.1968 5.9422 13 6 4.6797 3.5561 7.1977 14 1 5.1587 2.5895 7.1492 15 6 4.5549 4.2037 8.4086 16 7 5.0197 3.6444 9.5044 17 14 3.7257 5.8755 8.4926 18 1 2.2695 5.6948 8.7210 19 1 4.3083 6.6613 9.6099 20 1 3.9402 6.5992 7.2139 21 6 5.3286 3.1383 -0.5191 22 6 4.8513 3.1305 -1.9828 23 6 3.5189 3.7017 -1.4698 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 0.0004 30 1 2.3966 3.9949 1.1580 31 1 3.9190 4.8985 0.9726 32 1 4.4336 2.4182 2.2651 33 1 3.9127 2.3209 4.9088 34 1 5.4839 3.1148 4.6458 35 1 4.6453 5.1527 5.7817 36 1 3.0737 4.3594 6.0450 37 1 4.9315 4.0998 10.3563 38 1 5.8024 4.0731 -0.2193 39 1 5.9122 2.2596 -0.2446 40 1 4.7633 2.1301 -2.4067 41 1 5.4019 3.8169 -2.6261 42 1 2.6437 3.2774 -1.9618 43 1 3.4970 4.7908 -1.4305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360456325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -100.379170 kcal Electronic energy + Delta-G solvation = -22432.761256 eV Core-core repulsion = 19090.741279 eV Total energy + Delta-G solvation = -3342.019977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99040 -40.49867 -38.69221 -36.33232 -35.67359 -35.39186 -33.34681 -31.69146 -29.86489 -27.75930 -26.61720 -25.28099 -23.72474 -23.01029 -22.28554 -21.24861 -20.15675 -19.24688 -17.98397 -17.56885 -17.26508 -16.91900 -16.63232 -16.44854 -16.22087 -15.78271 -15.38862 -15.02952 -14.84791 -14.55859 -14.55276 -14.11153 -13.72243 -13.49363 -13.40414 -13.21601 -12.91659 -12.78627 -12.71470 -12.40329 -12.13808 -11.98017 -11.91887 -11.77568 -11.52114 -11.41837 -11.35020 -10.86673 -10.78739 -10.75759 -10.14887 -10.10589 -8.31850 -6.35646 1.33941 1.35563 1.47919 1.50937 1.65147 2.06907 2.22486 2.35183 3.03573 3.32931 3.55054 3.58903 3.75162 3.87611 3.98864 4.12548 4.19964 4.35130 4.38108 4.44175 4.49058 4.55511 4.71312 4.77189 4.82876 4.91445 4.96655 5.03207 5.03299 5.08797 5.13019 5.24043 5.29278 5.40527 5.42086 5.42858 5.45261 5.60012 6.22492 6.44945 6.46549 6.70653 7.14918 7.23036 7.29759 8.84090 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003617 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.408312 B = 7739.730060 C = 8316.024225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.717 5.717 4 C 0.536 3.464 5 O -0.572 6.572 6 C -0.122 4.122 7 C 0.139 3.861 8 N -0.724 5.724 9 C 0.519 3.481 10 O -0.578 6.578 11 C -0.121 4.121 12 C 0.008 3.992 13 C -0.533 4.533 14 H 0.045 0.955 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.259 1.259 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.103 4.103 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.413 0.587 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -2.722 -28.705 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.369 5.369 4 C 0.323 3.677 5 O -0.451 6.451 6 C -0.125 4.125 7 C 0.016 3.984 8 N -0.376 5.376 9 C 0.308 3.692 10 O -0.457 6.457 11 C -0.160 4.160 12 C -0.030 4.030 13 C -0.571 4.571 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.766 3.234 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.183 1.183 21 C -0.160 4.160 22 C -0.174 4.174 23 C -0.141 4.141 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.249 0.751 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.242 0.758 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.941 -2.612 -28.451 29.654 hybrid contribution -0.140 0.206 0.801 0.839 sum -8.081 -2.406 -27.650 28.907 Atomic orbital electron populations 1.21961 0.92134 1.04178 1.03203 1.21386 0.96115 0.82250 1.01520 1.45989 1.06648 1.09867 1.74400 1.20148 0.82592 0.90123 0.74885 1.90704 1.56509 1.47213 1.50723 1.22324 1.00671 0.92121 0.97416 1.21373 0.99668 0.96197 0.81194 1.46004 1.61258 1.23655 1.06700 1.21021 0.77838 0.84810 0.85572 1.90633 1.45204 1.22656 1.87237 1.21509 1.02825 1.00485 0.91223 1.19197 0.96176 0.95239 0.92368 1.21438 1.38112 1.05368 0.92171 0.93638 1.25851 0.95735 1.01672 0.95255 1.70033 1.48278 1.40759 0.99468 0.85769 0.79225 0.80067 0.78302 1.19196 1.20308 1.18316 1.22953 0.92955 1.03107 0.96998 1.22831 0.97120 1.01500 0.95925 1.22949 0.98795 1.02039 0.90289 0.90594 0.89787 0.91961 0.91729 0.93093 0.75064 0.90754 0.89943 0.75806 0.88658 0.88457 0.96863 0.97031 0.92330 0.88262 0.91775 0.91127 0.89092 0.89407 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.03 71.98 0.72 -0.67 16 2 C 0.11 1.62 6.40 86.38 0.55 2.17 16 3 N -0.72 -10.91 5.55 -463.06 -2.57 -13.48 16 4 C 0.54 10.90 5.65 87.66 0.50 11.39 16 5 O -0.57 -16.20 15.95 -3.04 -0.05 -16.25 16 6 C -0.12 -1.99 0.83 -52.41 -0.04 -2.04 16 7 C 0.14 2.82 5.00 86.38 0.43 3.26 16 8 N -0.72 -19.25 5.37 -463.05 -2.49 -21.74 16 9 C 0.52 18.64 7.83 87.66 0.69 19.33 16 10 O -0.58 -24.72 15.98 -3.03 -0.05 -24.77 16 11 C -0.12 -4.79 5.64 29.85 0.17 -4.62 16 12 C 0.01 0.41 3.33 29.85 0.10 0.51 16 13 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 14 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 15 C 0.01 0.75 5.47 84.65 0.46 1.21 16 16 N -0.94 -59.99 13.96 21.45 0.30 -59.70 16 17 Si 0.94 46.95 27.47 68.60 1.88 48.83 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.26 -12.74 6.54 99.48 0.65 -12.09 16 21 C -0.12 -2.08 7.11 31.18 0.22 -1.86 16 22 C -0.14 -1.73 7.81 31.18 0.24 -1.49 16 23 C -0.10 -1.05 7.22 31.12 0.22 -0.83 16 24 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.41 4.34 8.48 -92.70 -0.79 3.56 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.71 8.11 -2.39 -0.02 1.69 16 32 H 0.41 10.32 7.94 -92.71 -0.74 9.58 16 33 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 36 H 0.01 0.59 7.53 -2.39 -0.02 0.57 16 37 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.06 1.38 7.34 -2.38 -0.02 1.37 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.11 0.84 8.10 -2.38 -0.02 0.82 16 Total: -1.00 -77.34 355.56 0.97 -76.37 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.58 Total: 15.59 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.51 Total: -4.86 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -4.76 Total: -94.91 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.10 Total: -41.02 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.83 kcal Total: -77.34 0.97 -76.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360456325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.010 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds