Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47040 * 2 1 4 4 C 1.45653 * 117.70160 * 89.99869 * 3 2 1 5 5 C 1.52995 * 110.76926 * 158.10146 * 4 3 2 6 6 N 1.47259 * 108.19210 * 46.72242 * 5 4 3 7 7 C 1.34781 * 121.35696 * 118.47444 * 6 5 4 8 8 O 1.21278 * 120.00219 * 174.49983 * 7 6 5 9 9 C 1.50700 * 119.99492 * 354.50033 * 7 6 5 10 10 C 1.53000 * 109.46924 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47016 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00311 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46942 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47193 * 119.99299 * 15 13 11 18 18 H 1.48489 * 109.47395 * 239.99887 * 15 13 11 19 19 C 1.47055 * 117.29554 * 298.50162 * 6 5 4 20 20 C 1.52992 * 109.57120 * 162.55737 * 19 6 5 21 21 C 1.53005 * 109.56653 * 282.91376 * 19 6 5 22 22 C 1.33378 * 117.70562 * 269.73934 * 3 2 1 23 23 O 1.21278 * 118.48820 * 4.29274 * 22 3 2 24 24 H 1.08997 * 109.46856 * 60.00065 * 1 2 3 25 25 H 1.08999 * 109.46821 * 300.00278 * 1 2 3 26 26 H 1.08995 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46855 * 119.99919 * 2 1 3 28 28 H 1.09000 * 109.47281 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.21765 * 278.42537 * 4 3 2 30 30 H 1.08995 * 109.21879 * 37.77040 * 4 3 2 31 31 H 1.08994 * 109.71815 * 166.39856 * 5 4 3 32 32 H 1.09007 * 109.71619 * 287.00681 * 5 4 3 33 33 H 1.08999 * 109.47369 * 300.00223 * 9 7 6 34 34 H 1.09008 * 109.46800 * 60.00067 * 9 7 6 35 35 H 1.08995 * 109.47131 * 299.99908 * 10 9 7 36 36 H 1.09000 * 109.47101 * 59.99829 * 10 9 7 37 37 H 0.97009 * 120.00004 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.47188 * 70.56021 * 20 19 6 39 39 H 1.08998 * 109.47507 * 190.56205 * 20 19 6 40 40 H 1.09001 * 109.47480 * 310.56281 * 20 19 6 41 41 H 1.09003 * 109.47023 * 59.99179 * 21 19 6 42 42 H 1.08992 * 109.47050 * 179.97438 * 21 19 6 43 43 H 1.09001 * 109.46698 * 300.00307 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2441 2.0196 1.2896 5 6 3.2229 3.1875 1.1529 6 7 2.8119 3.9986 -0.0054 7 6 2.4490 5.2890 0.1353 8 8 2.2111 5.9625 -0.8448 9 6 2.3388 5.8949 1.5108 10 6 1.9145 7.3600 1.3901 11 6 1.8049 7.9661 2.7655 12 1 2.0163 7.3662 3.6383 13 6 1.4338 9.2861 2.9096 14 7 1.1759 10.0164 1.8466 15 14 1.2972 10.0373 4.6144 16 1 1.6365 9.0134 5.6350 17 1 2.2376 11.1809 4.7282 18 1 -0.0915 10.5144 4.8353 19 6 2.8129 3.3435 -1.3219 20 6 1.9707 4.1620 -2.3024 21 6 4.2486 3.2373 -1.8403 22 6 2.2302 1.9641 -1.1808 23 8 1.9352 1.3555 -2.1875 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.2952 2.3903 1.6773 30 1 2.6539 1.2876 1.9855 31 1 3.1969 3.7967 2.0563 32 1 4.2316 2.8054 0.9958 33 1 1.5955 5.3476 2.0905 34 1 3.3051 5.8369 2.0118 35 1 2.6581 7.9070 0.8106 36 1 0.9484 7.4183 0.8889 37 1 0.9151 10.9452 1.9479 38 1 2.4898 5.0906 -2.5401 39 1 1.8163 3.5880 -3.2160 40 1 1.0059 4.3908 -1.8497 41 1 4.8444 2.6493 -1.1422 42 1 4.2476 2.7512 -2.8158 43 1 4.6765 4.2357 -1.9318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360667251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -63.108443 kcal Electronic energy + Delta-G solvation = -23519.219732 eV Core-core repulsion = 20178.815935 eV Total energy + Delta-G solvation = -3340.403797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24203 -39.11597 -36.65648 -35.80738 -33.70457 -32.71462 -31.32859 -30.51926 -28.67827 -27.29661 -25.87260 -24.85424 -23.48098 -22.42956 -21.39777 -19.47098 -17.82514 -17.59822 -16.96583 -16.40275 -15.94271 -15.44645 -15.21655 -14.95033 -14.45246 -14.12645 -14.00328 -13.71758 -13.49304 -13.04562 -13.00706 -12.44093 -12.30270 -12.25560 -12.19075 -12.07248 -11.86126 -11.75741 -11.68539 -11.24189 -11.18868 -11.05559 -10.97384 -10.60940 -10.09156 -10.01551 -9.62497 -9.14108 -8.97188 -8.72254 -8.53767 -8.35455 -5.99618 -4.04279 2.48064 2.64859 3.02410 3.13426 3.30002 3.37497 3.39979 4.21398 4.43261 4.50174 4.72242 4.85385 4.92036 4.94736 5.00241 5.08418 5.20546 5.27064 5.35709 5.36356 5.49317 5.54783 5.60296 5.67570 5.73053 5.92519 5.98387 6.00255 6.08550 6.11216 6.17640 6.21858 6.44599 6.69532 6.80777 7.22569 7.60915 7.70435 7.81190 7.99163 8.02742 8.33780 8.64785 9.04097 9.59660 11.11260 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.004153 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.606188 B = 6739.714491 C = 7287.347710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.603 5.603 4 C 0.097 3.903 5 C 0.093 3.907 6 N -0.625 5.625 7 C 0.518 3.482 8 O -0.517 6.517 9 C -0.128 4.128 10 C 0.037 3.963 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.162 3.838 20 C -0.131 4.131 21 C -0.147 4.147 22 C 0.520 3.480 23 O -0.541 6.541 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -20.355 -0.929 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.335 5.335 4 C -0.027 4.027 5 C -0.030 4.030 6 N -0.364 5.364 7 C 0.309 3.691 8 O -0.391 6.391 9 C -0.168 4.168 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.074 3.926 20 C -0.188 4.188 21 C -0.205 4.205 22 C 0.307 3.693 23 O -0.418 6.418 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.117 -20.065 -2.047 20.585 hybrid contribution -0.122 0.340 1.214 1.267 sum 3.995 -19.725 -0.833 20.143 Atomic orbital electron populations 1.22088 0.95689 1.02107 1.02594 1.21535 0.94901 0.82429 1.03067 1.47324 1.65494 1.14720 1.06006 1.21867 1.00578 0.95623 0.84663 1.22053 0.97488 0.92382 0.91114 1.48648 1.69523 1.11830 1.06386 1.21578 0.74546 0.79531 0.93440 1.90676 1.48026 1.59988 1.40419 1.21928 1.02357 1.01617 0.90901 1.18913 0.97683 0.86466 0.96983 1.21227 1.46849 0.96067 0.92404 0.92581 1.25017 0.95377 0.97317 0.96606 1.70006 1.46275 1.08006 1.28419 0.86548 0.77687 0.79258 0.84536 1.19757 1.21008 1.21030 1.20672 0.97331 0.88970 0.85627 1.22125 0.99961 1.00071 0.96656 1.22066 0.93509 1.03435 1.01520 1.20349 0.77720 0.88285 0.82908 1.90683 1.51475 1.63925 1.35684 0.92089 0.92520 0.91682 0.90570 0.89745 0.90917 0.89453 0.86885 0.90506 0.90245 0.90178 0.95751 0.95807 0.92974 0.88435 0.92238 0.92074 0.92454 0.90765 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.23 37.16 0.38 -1.16 16 2 C 0.10 0.95 5.89 -4.04 -0.02 0.93 16 3 N -0.60 -6.71 2.81 -174.89 -0.49 -7.20 16 4 C 0.10 0.84 6.58 -4.50 -0.03 0.81 16 5 C 0.09 0.92 6.30 -3.63 -0.02 0.89 16 6 N -0.63 -8.87 2.62 -159.26 -0.42 -9.29 16 7 C 0.52 9.49 7.39 -10.98 -0.08 9.41 16 8 O -0.52 -11.36 12.17 5.56 0.07 -11.29 16 9 C -0.13 -2.43 4.05 -27.88 -0.11 -2.55 16 10 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 11 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.16 2.32 0.97 -132.81 -0.13 2.19 16 20 C -0.13 -2.13 6.95 37.15 0.26 -1.88 16 21 C -0.15 -1.79 8.64 37.16 0.32 -1.47 16 22 C 0.52 7.35 6.33 -11.75 -0.07 7.28 16 23 O -0.54 -8.96 15.46 5.56 0.09 -8.87 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.49 7.81 -51.92 -0.41 0.08 16 28 H 0.08 0.88 7.22 -51.93 -0.38 0.50 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.48 7.84 -51.93 -0.41 0.08 16 31 H 0.11 1.00 6.05 -51.93 -0.31 0.69 16 32 H 0.08 0.63 7.52 -51.93 -0.39 0.24 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.08 1.36 7.60 -51.92 -0.39 0.96 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.72 6.35 -51.93 -0.33 1.39 16 39 H 0.06 0.92 7.57 -51.93 -0.39 0.53 16 40 H 0.06 1.11 7.39 -51.93 -0.38 0.73 16 41 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -34.16 341.39 -7.06 -41.22 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.12 Total: -1.79 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.04 Total: 2.09 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.17 Total: -42.66 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.15 Total: -20.17 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.16 -7.06 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360667251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.888 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds