Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47040 * 2 1 4 4 C 1.45653 * 117.70160 * 89.99869 * 3 2 1 5 5 C 1.52995 * 110.76926 * 158.10146 * 4 3 2 6 6 N 1.47259 * 108.19210 * 46.72242 * 5 4 3 7 7 C 1.34781 * 121.35696 * 118.47444 * 6 5 4 8 8 O 1.21278 * 120.00219 * 174.49983 * 7 6 5 9 9 C 1.50700 * 119.99492 * 354.50033 * 7 6 5 10 10 C 1.53000 * 109.46924 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47016 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00311 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46942 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47193 * 119.99299 * 15 13 11 18 18 H 1.48489 * 109.47395 * 239.99887 * 15 13 11 19 19 C 1.47055 * 117.29554 * 298.50162 * 6 5 4 20 20 C 1.52992 * 109.57120 * 162.55737 * 19 6 5 21 21 C 1.53005 * 109.56653 * 282.91376 * 19 6 5 22 22 C 1.33378 * 117.70562 * 269.73934 * 3 2 1 23 23 O 1.21278 * 118.48820 * 4.29274 * 22 3 2 24 24 H 1.08997 * 109.46856 * 60.00065 * 1 2 3 25 25 H 1.08999 * 109.46821 * 300.00278 * 1 2 3 26 26 H 1.08995 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46855 * 119.99919 * 2 1 3 28 28 H 1.09000 * 109.47281 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.21765 * 278.42537 * 4 3 2 30 30 H 1.08995 * 109.21879 * 37.77040 * 4 3 2 31 31 H 1.08994 * 109.71815 * 166.39856 * 5 4 3 32 32 H 1.09007 * 109.71619 * 287.00681 * 5 4 3 33 33 H 1.08999 * 109.47369 * 300.00223 * 9 7 6 34 34 H 1.09008 * 109.46800 * 60.00067 * 9 7 6 35 35 H 1.08995 * 109.47131 * 299.99908 * 10 9 7 36 36 H 1.09000 * 109.47101 * 59.99829 * 10 9 7 37 37 H 0.97009 * 120.00004 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.47188 * 70.56021 * 20 19 6 39 39 H 1.08998 * 109.47507 * 190.56205 * 20 19 6 40 40 H 1.09001 * 109.47480 * 310.56281 * 20 19 6 41 41 H 1.09003 * 109.47023 * 59.99179 * 21 19 6 42 42 H 1.08992 * 109.47050 * 179.97438 * 21 19 6 43 43 H 1.09001 * 109.46698 * 300.00307 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2441 2.0196 1.2896 5 6 3.2229 3.1875 1.1529 6 7 2.8119 3.9986 -0.0054 7 6 2.4490 5.2890 0.1353 8 8 2.2111 5.9625 -0.8448 9 6 2.3388 5.8949 1.5108 10 6 1.9145 7.3600 1.3901 11 6 1.8049 7.9661 2.7655 12 1 2.0163 7.3662 3.6383 13 6 1.4338 9.2861 2.9096 14 7 1.1759 10.0164 1.8466 15 14 1.2972 10.0373 4.6144 16 1 1.6365 9.0134 5.6350 17 1 2.2376 11.1809 4.7282 18 1 -0.0915 10.5144 4.8353 19 6 2.8129 3.3435 -1.3219 20 6 1.9707 4.1620 -2.3024 21 6 4.2486 3.2373 -1.8403 22 6 2.2302 1.9641 -1.1808 23 8 1.9352 1.3555 -2.1875 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.2952 2.3903 1.6773 30 1 2.6539 1.2876 1.9855 31 1 3.1969 3.7967 2.0563 32 1 4.2316 2.8054 0.9958 33 1 1.5955 5.3476 2.0905 34 1 3.3051 5.8369 2.0118 35 1 2.6581 7.9070 0.8106 36 1 0.9484 7.4183 0.8889 37 1 0.9151 10.9452 1.9479 38 1 2.4898 5.0906 -2.5401 39 1 1.8163 3.5880 -3.2160 40 1 1.0059 4.3908 -1.8497 41 1 4.8444 2.6493 -1.1422 42 1 4.2476 2.7512 -2.8158 43 1 4.6765 4.2357 -1.9318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360667251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -85.982820 kcal Electronic energy + Delta-G solvation = -23520.211639 eV Core-core repulsion = 20178.815935 eV Total energy + Delta-G solvation = -3341.395704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34337 -40.41917 -37.69625 -36.97186 -35.59460 -34.08427 -32.61115 -31.90974 -29.60594 -28.48668 -27.71219 -25.95406 -24.33137 -23.97065 -22.67594 -20.82221 -19.10699 -18.69390 -18.42102 -17.71929 -17.06297 -16.77707 -16.50274 -16.32940 -16.11546 -15.22192 -15.05442 -14.83012 -14.65028 -14.30517 -14.20860 -13.84689 -13.64534 -13.39518 -13.23134 -13.22481 -13.17827 -12.96045 -12.83433 -12.72305 -12.52809 -12.40113 -12.37368 -11.90763 -11.84817 -11.54036 -11.25018 -11.22116 -10.55179 -10.20540 -9.87172 -9.66191 -8.15403 -6.28945 1.39328 1.44817 1.45677 1.58621 1.64086 1.70145 1.99531 2.45115 3.18567 3.26150 3.58657 3.78753 3.85531 3.97747 4.13656 4.15771 4.26466 4.35686 4.45352 4.50957 4.56014 4.58131 4.63064 4.63774 4.68495 4.75578 4.79313 4.89606 4.98950 5.06241 5.10141 5.15221 5.26832 5.39711 5.49828 5.54915 5.66400 5.88380 6.19789 6.25177 6.37995 6.90333 6.96534 7.25884 7.41687 8.97404 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.004153 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.606188 B = 6739.714491 C = 7287.347710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.598 5.598 4 C 0.092 3.908 5 C 0.082 3.918 6 N -0.615 5.615 7 C 0.516 3.484 8 O -0.569 6.569 9 C -0.113 4.113 10 C 0.042 3.958 11 C -0.537 4.537 12 H 0.080 0.920 13 C -0.007 4.007 14 N -0.939 5.939 15 Si 0.971 3.029 16 H -0.249 1.249 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.157 3.843 20 C -0.121 4.121 21 C -0.140 4.140 22 C 0.517 3.483 23 O -0.574 6.574 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.111 0.889 35 H -0.017 1.017 36 H -0.021 1.021 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 -23.029 2.636 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.329 5.329 4 C -0.030 4.030 5 C -0.039 4.039 6 N -0.351 5.351 7 C 0.307 3.693 8 O -0.447 6.447 9 C -0.153 4.153 10 C 0.005 3.995 11 C -0.575 4.575 12 H 0.098 0.902 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.795 3.205 16 H -0.172 1.172 17 H -0.209 1.209 18 H -0.210 1.210 19 C 0.069 3.931 20 C -0.179 4.179 21 C -0.198 4.198 22 C 0.304 3.696 23 O -0.454 6.454 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.001 0.999 36 H -0.003 1.003 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.404 -22.817 1.584 23.501 hybrid contribution -0.540 1.114 0.078 1.240 sum 4.864 -21.703 1.662 22.303 Atomic orbital electron populations 1.22063 0.95983 1.03024 1.01073 1.21733 0.94603 0.81337 1.04415 1.47446 1.64059 1.15448 1.05901 1.22135 1.00587 0.96279 0.84010 1.22527 0.99226 0.92448 0.89723 1.48536 1.67924 1.10716 1.07966 1.21445 0.74502 0.80789 0.92535 1.90677 1.50559 1.61808 1.41652 1.21672 1.04429 0.97159 0.92019 1.18695 0.94268 0.90944 0.95626 1.21744 1.45816 0.96513 0.93441 0.90216 1.26115 0.94962 0.98189 1.01187 1.70192 1.47823 1.08428 1.31504 0.85308 0.77412 0.78533 0.79201 1.17207 1.20882 1.21036 1.20682 0.98263 0.88959 0.85155 1.21930 0.98816 0.99713 0.97443 1.22007 0.92137 1.03396 1.02279 1.20189 0.77879 0.87836 0.83675 1.90671 1.53095 1.64517 1.37069 0.95607 0.91920 0.89636 0.86360 0.91177 0.91049 0.84644 0.85257 0.87777 0.87708 0.87128 0.99893 1.00299 0.93024 0.90315 0.92035 0.94832 0.89905 0.90581 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.23 71.98 0.74 -1.96 16 2 C 0.10 1.53 5.89 86.38 0.51 2.04 16 3 N -0.60 -11.52 2.81 -826.39 -2.32 -13.84 16 4 C 0.09 1.16 6.58 86.54 0.57 1.73 16 5 C 0.08 1.26 6.30 86.23 0.54 1.81 16 6 N -0.61 -16.58 2.62 -776.16 -2.03 -18.62 16 7 C 0.52 19.09 7.39 87.66 0.65 19.74 16 8 O -0.57 -26.63 12.17 -3.02 -0.04 -26.67 16 9 C -0.11 -4.18 4.05 29.85 0.12 -4.06 16 10 C 0.04 2.27 4.26 29.85 0.13 2.39 16 11 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 12 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 13 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 14 N -0.94 -58.85 13.29 21.45 0.28 -58.57 16 15 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 16 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.16 4.46 0.97 2.66 0.00 4.46 16 20 C -0.12 -4.23 6.95 71.98 0.50 -3.73 16 21 C -0.14 -3.27 8.64 71.98 0.62 -2.64 16 22 C 0.52 14.07 6.33 87.78 0.56 14.62 16 23 O -0.57 -19.03 15.46 -3.02 -0.05 -19.08 16 24 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.12 0.85 7.81 -2.38 -0.02 0.84 16 28 H 0.07 1.31 7.22 -2.39 -0.02 1.30 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.14 0.54 7.84 -2.39 -0.02 0.52 16 31 H 0.13 1.62 6.05 -2.39 -0.01 1.61 16 32 H 0.10 1.13 7.52 -2.38 -0.02 1.12 16 33 H 0.10 3.34 8.07 -2.39 -0.02 3.32 16 34 H 0.11 3.41 7.60 -2.38 -0.02 3.39 16 35 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 36 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 37 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 38 H 0.08 3.02 6.35 -2.39 -0.02 3.01 16 39 H 0.06 2.04 7.57 -2.39 -0.02 2.03 16 40 H 0.03 1.31 7.39 -2.39 -0.02 1.29 16 41 H 0.08 1.50 7.51 -2.39 -0.02 1.48 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -80.76 341.39 4.48 -76.27 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.98 Total: 9.99 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.63 Total: 5.36 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -4.07 Total: -91.03 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.08 Total: -45.75 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -80.76 4.48 -76.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360667251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.709 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds