Wall clock time and date at job start Tue Mar 31 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.51863 * 2 1 4 4 C 1.53303 * 109.50873 * 120.10215 * 2 1 3 5 5 N 1.47149 * 108.38565 * 67.61759 * 4 2 1 6 6 C 1.34775 * 120.98233 * 230.55790 * 5 4 2 7 7 O 1.21587 * 119.99967 * 354.98684 * 6 5 4 8 8 N 1.34781 * 120.00061 * 174.99455 * 6 5 4 9 9 C 1.46503 * 119.99907 * 185.08447 * 8 6 5 10 10 C 1.53005 * 109.46669 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46579 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99508 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00289 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99540 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47237 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46911 * 120.00481 * 15 13 11 18 18 H 1.48506 * 109.47101 * 239.99900 * 15 13 11 19 19 C 1.47150 * 118.03521 * 50.54033 * 5 4 2 20 20 C 1.53299 * 108.38297 * 309.45972 * 19 5 4 21 21 H 1.08993 * 109.51496 * 292.32841 * 20 19 5 22 22 C 1.53001 * 109.51049 * 172.22320 * 20 19 5 23 23 C 1.53010 * 117.49351 * 111.25660 * 22 20 19 24 24 C 1.53005 * 117.49772 * 179.91337 * 22 20 19 25 25 O 1.42961 * 109.22084 * 52.30499 * 20 19 5 26 26 H 1.08996 * 109.47116 * 299.90519 * 1 2 3 27 27 H 1.09007 * 109.46402 * 59.90099 * 1 2 3 28 28 H 1.08999 * 109.47308 * 179.89749 * 1 2 3 29 29 H 1.09001 * 109.67952 * 307.89610 * 4 2 1 30 30 H 1.09001 * 109.67871 * 187.34770 * 4 2 1 31 31 H 0.97000 * 119.99393 * 5.07590 * 8 6 5 32 32 H 1.09003 * 109.46573 * 299.99372 * 9 8 6 33 33 H 1.08996 * 109.47117 * 59.99309 * 9 8 6 34 34 H 1.08994 * 109.46905 * 299.99268 * 10 9 8 35 35 H 1.08995 * 109.47068 * 59.99767 * 10 9 8 36 36 H 0.96991 * 120.00188 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.68079 * 189.74094 * 19 5 4 38 38 H 1.08996 * 109.71458 * 69.20056 * 19 5 4 39 39 H 1.09000 * 115.55306 * 325.58894 * 22 20 19 40 40 H 1.08997 * 117.49369 * 215.00587 * 23 22 20 41 41 H 1.08994 * 117.49499 * 0.02562 * 23 22 20 42 42 H 1.09000 * 117.49698 * 359.97438 * 24 22 20 43 43 H 1.08996 * 117.49938 * 145.00074 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7247 1.2501 5 7 1.6957 -2.1503 1.1346 6 6 1.0705 -2.7959 2.1389 7 8 0.8657 -2.2263 3.1934 8 7 0.6724 -4.0731 1.9744 9 6 -0.1047 -4.7389 3.0228 10 6 -0.4259 -6.1703 2.5881 11 6 -1.2247 -6.8555 3.6668 12 1 -1.4775 -6.3234 4.5719 13 6 -1.6327 -8.1617 3.4980 14 7 -1.3243 -8.8098 2.3960 15 14 -2.6222 -9.0112 4.8354 16 1 -2.8337 -8.0726 5.9665 17 1 -3.9370 -9.4310 4.2873 18 1 -1.8821 -10.2057 5.3158 19 6 2.0520 -2.8499 -0.1099 20 6 1.5395 -2.0217 -1.2938 21 1 0.4496 -2.0297 -1.2991 22 6 2.0614 -2.6215 -2.6010 23 6 1.0427 -3.2848 -3.5301 24 6 1.6554 -1.9332 -3.9058 25 8 2.0075 -0.6770 -1.1651 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5154 -0.8892 28 1 -0.3634 -1.0276 -0.0018 29 1 1.5703 -0.3032 2.1378 30 1 3.1240 -0.6142 1.3212 31 1 0.9004 -4.5512 1.1618 32 1 0.4745 -4.7605 3.9460 33 1 -1.0332 -4.1929 3.1890 34 1 -1.0051 -6.1484 1.6651 35 1 0.5026 -6.7165 2.4216 36 1 -1.6116 -9.7285 2.2772 37 1 1.5870 -3.8357 -0.1229 38 1 3.1349 -2.9539 -0.1761 39 1 3.0583 -3.0598 -2.5522 40 1 1.3694 -4.1595 -4.0925 41 1 0.0008 -3.2935 -3.2102 42 1 1.0161 -1.0534 -3.8329 43 1 2.3851 -1.9187 -4.7153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366199622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:43 Heat of formation + Delta-G solvation = -48.362297 kcal Electronic energy + Delta-G solvation = -22859.437202 eV Core-core repulsion = 19519.672846 eV Total energy + Delta-G solvation = -3339.764356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67784 -38.85270 -37.05267 -34.94915 -34.63604 -32.92978 -32.22201 -29.64302 -29.11798 -26.55468 -24.50054 -24.43789 -22.54717 -21.79618 -20.95410 -20.38567 -19.31179 -18.03992 -16.75760 -16.59469 -16.34290 -15.76503 -15.36833 -15.02614 -14.69955 -14.46129 -14.32904 -14.06824 -13.59715 -13.53888 -13.04508 -12.61400 -12.29479 -12.18825 -12.07958 -11.74487 -11.54186 -11.49423 -11.15861 -11.05791 -10.86949 -10.63493 -10.59368 -10.40594 -10.34900 -10.10088 -9.88361 -9.55045 -9.25679 -8.69479 -8.45883 -8.18605 -6.10105 -4.12657 2.74688 3.21541 3.28046 3.35750 3.41141 3.49431 3.84048 4.17684 4.34986 4.43589 4.55000 4.68650 4.77307 4.84618 4.87862 4.93458 5.06524 5.13997 5.26345 5.27236 5.46137 5.49910 5.54151 5.63845 5.70171 5.71568 5.78177 5.91331 5.94134 6.05676 6.22257 6.38110 6.48669 6.75397 6.96842 6.99728 7.11633 7.54274 7.61608 7.89001 8.22251 8.33706 8.89775 8.95330 9.52266 11.01649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.003805 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.648142 B = 7357.916739 C = 8370.004570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 H 0.113 0.887 4 C 0.102 3.898 5 N -0.637 5.637 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.087 3.913 20 C 0.106 3.894 21 H 0.069 0.931 22 C -0.151 4.151 23 C -0.172 4.172 24 C -0.164 4.164 25 O -0.368 6.368 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.392 0.608 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 15.329 -12.487 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.016 3.984 3 H 0.130 0.870 4 C -0.022 4.022 5 N -0.376 5.376 6 C 0.406 3.594 7 O -0.472 6.472 8 N -0.394 5.394 9 C 0.016 3.984 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.037 4.037 20 C 0.048 3.952 21 H 0.087 0.913 22 C -0.170 4.170 23 C -0.208 4.208 24 C -0.201 4.201 25 O -0.287 6.287 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.221 15.630 -11.874 20.915 hybrid contribution -0.533 -0.999 0.431 1.212 sum 6.687 14.630 -11.443 19.741 Atomic orbital electron populations 1.22360 0.95848 1.03094 1.02654 1.22630 0.94210 0.96440 0.85149 0.86955 1.22110 1.00457 0.80276 0.99332 1.47251 1.63538 1.10692 1.16114 1.15929 0.78263 0.82060 0.83154 1.90877 1.62708 1.67656 1.25971 1.45708 1.58633 1.11568 1.23471 1.21617 0.93213 0.94830 0.88697 1.19328 0.97267 0.88304 0.97554 1.21085 1.34097 0.97427 1.03257 0.92157 1.24989 0.96125 0.97365 0.95781 1.69960 1.46256 1.11318 1.25798 0.86461 0.79743 0.79488 0.81912 1.19562 1.20937 1.20930 1.22265 1.01180 0.96413 0.83834 1.21953 0.98079 0.82579 0.92639 0.91285 1.22116 1.00252 1.04571 0.90045 1.23069 0.98411 0.96803 1.02566 1.22829 1.03565 0.96220 0.97452 1.88007 1.72293 1.24992 1.43403 0.91195 0.91923 0.91917 0.88044 0.91231 0.77255 0.92653 0.92848 0.96016 0.95977 0.92913 0.89149 0.90622 0.86990 0.88119 0.88480 0.88581 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.81 37.16 0.33 -1.57 16 2 C 0.07 0.75 3.93 -26.58 -0.10 0.65 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.10 1.22 6.00 -3.53 -0.02 1.20 16 5 N -0.64 -8.93 2.54 -178.00 -0.45 -9.38 16 6 C 0.70 12.81 8.31 -86.92 -0.72 12.08 16 7 O -0.59 -12.91 15.85 5.29 0.08 -12.83 16 8 N -0.74 -13.50 5.47 -65.22 -0.36 -13.86 16 9 C 0.14 3.03 5.62 -4.04 -0.02 3.00 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.09 1.00 5.91 -3.53 -0.02 0.98 16 20 C 0.11 1.11 2.58 -26.58 -0.07 1.05 16 21 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 22 C -0.15 -1.36 5.39 -90.61 -0.49 -1.85 16 23 C -0.17 -1.42 10.18 -26.68 -0.27 -1.69 16 24 C -0.16 -1.35 10.17 -26.69 -0.27 -1.62 16 25 O -0.37 -4.08 10.14 -35.23 -0.36 -4.44 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.06 0.77 6.11 -51.93 -0.32 0.46 16 29 H 0.10 1.33 7.11 -51.93 -0.37 0.96 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 6.29 5.98 -40.82 -0.24 6.05 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.01 5.66 -51.93 -0.29 0.72 16 38 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -32.03 345.46 -9.37 -41.39 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.99 Total: 3.65 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.22 Total: -0.79 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.07 Total: -48.53 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.03 -9.37 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds