Wall clock time and date at job start Tue Mar 31 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.51863 * 2 1 4 4 C 1.53303 * 109.50873 * 120.10215 * 2 1 3 5 5 N 1.47149 * 108.38565 * 67.61759 * 4 2 1 6 6 C 1.34775 * 120.98233 * 230.55790 * 5 4 2 7 7 O 1.21587 * 119.99967 * 354.98684 * 6 5 4 8 8 N 1.34781 * 120.00061 * 174.99455 * 6 5 4 9 9 C 1.46503 * 119.99907 * 185.08447 * 8 6 5 10 10 C 1.53005 * 109.46669 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46579 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99508 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00289 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99540 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47237 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46911 * 120.00481 * 15 13 11 18 18 H 1.48506 * 109.47101 * 239.99900 * 15 13 11 19 19 C 1.47150 * 118.03521 * 50.54033 * 5 4 2 20 20 C 1.53299 * 108.38297 * 309.45972 * 19 5 4 21 21 H 1.08993 * 109.51496 * 292.32841 * 20 19 5 22 22 C 1.53001 * 109.51049 * 172.22320 * 20 19 5 23 23 C 1.53010 * 117.49351 * 111.25660 * 22 20 19 24 24 C 1.53005 * 117.49772 * 179.91337 * 22 20 19 25 25 O 1.42961 * 109.22084 * 52.30499 * 20 19 5 26 26 H 1.08996 * 109.47116 * 299.90519 * 1 2 3 27 27 H 1.09007 * 109.46402 * 59.90099 * 1 2 3 28 28 H 1.08999 * 109.47308 * 179.89749 * 1 2 3 29 29 H 1.09001 * 109.67952 * 307.89610 * 4 2 1 30 30 H 1.09001 * 109.67871 * 187.34770 * 4 2 1 31 31 H 0.97000 * 119.99393 * 5.07590 * 8 6 5 32 32 H 1.09003 * 109.46573 * 299.99372 * 9 8 6 33 33 H 1.08996 * 109.47117 * 59.99309 * 9 8 6 34 34 H 1.08994 * 109.46905 * 299.99268 * 10 9 8 35 35 H 1.08995 * 109.47068 * 59.99767 * 10 9 8 36 36 H 0.96991 * 120.00188 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.68079 * 189.74094 * 19 5 4 38 38 H 1.08996 * 109.71458 * 69.20056 * 19 5 4 39 39 H 1.09000 * 115.55306 * 325.58894 * 22 20 19 40 40 H 1.08997 * 117.49369 * 215.00587 * 23 22 20 41 41 H 1.08994 * 117.49499 * 0.02562 * 23 22 20 42 42 H 1.09000 * 117.49698 * 359.97438 * 24 22 20 43 43 H 1.08996 * 117.49938 * 145.00074 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7247 1.2501 5 7 1.6957 -2.1503 1.1346 6 6 1.0705 -2.7959 2.1389 7 8 0.8657 -2.2263 3.1934 8 7 0.6724 -4.0731 1.9744 9 6 -0.1047 -4.7389 3.0228 10 6 -0.4259 -6.1703 2.5881 11 6 -1.2247 -6.8555 3.6668 12 1 -1.4775 -6.3234 4.5719 13 6 -1.6327 -8.1617 3.4980 14 7 -1.3243 -8.8098 2.3960 15 14 -2.6222 -9.0112 4.8354 16 1 -2.8337 -8.0726 5.9665 17 1 -3.9370 -9.4310 4.2873 18 1 -1.8821 -10.2057 5.3158 19 6 2.0520 -2.8499 -0.1099 20 6 1.5395 -2.0217 -1.2938 21 1 0.4496 -2.0297 -1.2991 22 6 2.0614 -2.6215 -2.6010 23 6 1.0427 -3.2848 -3.5301 24 6 1.6554 -1.9332 -3.9058 25 8 2.0075 -0.6770 -1.1651 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5154 -0.8892 28 1 -0.3634 -1.0276 -0.0018 29 1 1.5703 -0.3032 2.1378 30 1 3.1240 -0.6142 1.3212 31 1 0.9004 -4.5512 1.1618 32 1 0.4745 -4.7605 3.9460 33 1 -1.0332 -4.1929 3.1890 34 1 -1.0051 -6.1484 1.6651 35 1 0.5026 -6.7165 2.4216 36 1 -1.6116 -9.7285 2.2772 37 1 1.5870 -3.8357 -0.1229 38 1 3.1349 -2.9539 -0.1761 39 1 3.0583 -3.0598 -2.5522 40 1 1.3694 -4.1595 -4.0925 41 1 0.0008 -3.2935 -3.2102 42 1 1.0161 -1.0534 -3.8329 43 1 2.3851 -1.9187 -4.7153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366199622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:42 Heat of formation + Delta-G solvation = -68.152763 kcal Electronic energy + Delta-G solvation = -22860.295381 eV Core-core repulsion = 19519.672846 eV Total energy + Delta-G solvation = -3340.622535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80762 -40.05132 -37.81613 -36.65951 -35.84849 -34.81613 -33.22848 -31.45293 -30.08417 -27.82362 -26.26687 -25.39013 -23.28441 -23.10000 -22.42876 -21.38590 -20.46129 -19.29979 -18.52830 -17.72065 -17.43843 -17.02071 -16.63894 -16.45557 -15.91946 -15.62246 -15.48910 -15.40680 -14.99271 -14.53339 -14.47968 -14.25812 -13.55862 -13.36246 -13.04423 -12.96189 -12.93529 -12.52730 -12.41015 -12.36592 -12.28865 -12.25466 -11.76036 -11.68905 -11.49755 -11.34056 -11.28696 -10.99928 -10.94570 -10.61401 -10.16403 -9.44417 -8.24466 -6.34731 1.41122 1.41744 1.50358 1.56465 2.04664 2.39855 2.44291 2.85197 3.10546 3.17140 3.52059 3.69805 3.87816 3.93740 4.01262 4.10721 4.16454 4.26437 4.27580 4.42821 4.46818 4.48919 4.54950 4.67947 4.78546 4.81214 4.83517 4.84415 4.93126 5.07807 5.14986 5.26124 5.27433 5.30927 5.37422 5.49288 5.57006 5.75965 5.84161 6.14820 6.16003 6.78033 6.88576 7.34683 7.46946 8.87736 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.003805 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.648142 B = 7357.916739 C = 8370.004570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 H 0.142 0.858 4 C 0.097 3.903 5 N -0.629 5.629 6 C 0.703 3.297 7 O -0.633 6.633 8 N -0.734 5.734 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.277 1.277 19 C 0.083 3.917 20 C 0.111 3.889 21 H 0.059 0.941 22 C -0.159 4.159 23 C -0.172 4.172 24 C -0.158 4.158 25 O -0.371 6.371 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.403 0.597 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.774 15.836 -13.275 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.022 3.978 3 H 0.160 0.840 4 C -0.026 4.026 5 N -0.367 5.367 6 C 0.404 3.596 7 O -0.514 6.514 8 N -0.391 5.391 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.040 4.040 20 C 0.052 3.948 21 H 0.077 0.923 22 C -0.177 4.177 23 C -0.209 4.209 24 C -0.195 4.195 25 O -0.290 6.290 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.241 0.759 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.705 16.158 -12.717 21.958 hybrid contribution -0.642 -1.114 0.618 1.426 sum 7.063 15.044 -12.099 20.558 Atomic orbital electron populations 1.22334 0.96244 1.01751 1.03308 1.22721 0.93838 0.97410 0.83870 0.84032 1.22336 1.01350 0.78966 0.99959 1.47273 1.62044 1.11527 1.15807 1.16016 0.78378 0.81702 0.83497 1.90845 1.64347 1.68389 1.27864 1.45417 1.58524 1.11977 1.23183 1.21108 0.93055 0.93219 0.89024 1.19121 0.95963 0.89740 0.96428 1.21473 1.34829 0.98207 1.03935 0.92327 1.25844 0.97059 0.98012 0.98062 1.70055 1.47137 1.11825 1.27500 0.85402 0.78294 0.78329 0.79056 1.19024 1.20149 1.20213 1.22484 1.02152 0.96428 0.82902 1.21902 0.97541 0.82379 0.92933 0.92279 1.22136 1.00844 1.05216 0.89525 1.23121 0.97980 0.97425 1.02362 1.22882 1.03549 0.95894 0.97205 1.88016 1.72312 1.25112 1.43537 0.91209 0.90600 0.94217 0.89382 0.89692 0.75929 0.93827 0.93762 0.97267 0.97372 0.92515 0.89166 0.89071 0.86034 0.87047 0.89118 0.89042 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.81 71.98 0.63 -2.92 16 2 C 0.08 1.46 3.93 30.69 0.12 1.58 16 3 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.10 2.21 6.00 86.36 0.52 2.73 16 5 N -0.63 -17.24 2.54 -835.33 -2.12 -19.36 16 6 C 0.70 25.69 8.31 179.05 1.49 27.18 16 7 O -0.63 -27.97 15.85 -3.99 -0.06 -28.03 16 8 N -0.73 -27.17 5.47 -478.52 -2.62 -29.78 16 9 C 0.16 7.12 5.62 86.38 0.49 7.60 16 10 C 0.03 1.27 5.09 29.85 0.15 1.43 16 11 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.01 0.51 5.46 84.66 0.46 0.97 16 14 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 15 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 C 0.08 1.80 5.91 86.36 0.51 2.31 16 20 C 0.11 2.18 2.58 30.69 0.08 2.26 16 21 H 0.06 1.29 6.01 -2.39 -0.01 1.28 16 22 C -0.16 -2.56 5.39 -10.79 -0.06 -2.62 16 23 C -0.17 -2.58 10.18 30.62 0.31 -2.27 16 24 C -0.16 -2.29 10.17 30.62 0.31 -1.98 16 25 O -0.37 -7.43 10.14 -148.98 -1.51 -8.94 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.04 0.97 6.11 -2.39 -0.01 0.95 16 29 H 0.09 2.28 7.11 -2.39 -0.02 2.27 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.40 13.00 5.98 -92.71 -0.55 12.44 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.09 1.95 5.66 -2.39 -0.01 1.94 16 38 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 39 H 0.12 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.06 345.46 1.69 -66.37 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.44 Total: 22.00 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.25 Total: 5.85 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -4.45 Total: -102.88 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.57 Total: -36.97 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.06 1.69 -66.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.785 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds