Wall clock time and date at job start Tue Mar 31 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.51594 * 2 1 4 4 C 1.53290 * 109.51467 * 120.10742 * 2 1 3 5 5 N 1.47157 * 108.38618 * 172.22512 * 4 2 1 6 6 C 1.34770 * 120.98566 * 129.44434 * 5 4 2 7 7 O 1.21583 * 120.00303 * 175.03402 * 6 5 4 8 8 N 1.34782 * 119.99972 * 355.02872 * 6 5 4 9 9 C 1.46497 * 120.00296 * 185.08195 * 8 6 5 10 10 C 1.53000 * 109.47193 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.46888 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99573 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47142 * 60.00446 * 15 13 11 17 17 H 1.48505 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47160 * 299.99842 * 15 13 11 19 19 C 1.47157 * 118.03295 * 309.46070 * 5 4 2 20 20 C 1.53302 * 108.38310 * 50.53737 * 19 5 4 21 21 H 1.09000 * 109.50997 * 67.66525 * 20 19 5 22 22 C 1.52998 * 109.51232 * 187.77015 * 20 19 5 23 23 C 1.52990 * 117.49850 * 179.97438 * 22 20 19 24 24 C 1.52998 * 117.49908 * 248.62352 * 22 20 19 25 25 O 1.42963 * 109.22225 * 307.69823 * 20 19 5 26 26 H 1.09000 * 109.46743 * 299.89223 * 1 2 3 27 27 H 1.09002 * 109.47268 * 59.89515 * 1 2 3 28 28 H 1.09001 * 109.47241 * 179.89804 * 1 2 3 29 29 H 1.09001 * 109.68650 * 52.49951 * 4 2 1 30 30 H 1.09002 * 109.71373 * 291.96552 * 4 2 1 31 31 H 0.97007 * 119.99657 * 5.08662 * 8 6 5 32 32 H 1.08998 * 109.47295 * 300.00222 * 9 8 6 33 33 H 1.09006 * 109.46741 * 60.00478 * 9 8 6 34 34 H 1.08998 * 109.47074 * 300.00226 * 10 9 8 35 35 H 1.08998 * 109.46870 * 60.00177 * 10 9 8 36 36 H 0.97000 * 120.00099 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.68464 * 290.81376 * 19 5 4 38 38 H 1.08996 * 109.67972 * 170.26012 * 19 5 4 39 39 H 1.09003 * 115.55696 * 34.31382 * 22 20 19 40 40 H 1.09001 * 117.49982 * 0.02562 * 23 22 20 41 41 H 1.09001 * 117.50182 * 214.98021 * 23 22 20 42 42 H 1.08999 * 117.49852 * 145.02560 * 24 22 20 43 43 H 1.08997 * 117.51868 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7248 1.2499 5 7 3.5012 -0.8758 1.1338 6 6 4.3195 -0.5027 2.1376 7 8 5.5136 -0.7180 2.0605 8 7 3.8140 0.1092 3.2270 9 6 4.7136 0.6144 4.2669 10 6 3.8906 1.2587 5.3843 11 6 4.8161 1.7778 6.4544 12 1 5.8843 1.6604 6.3480 13 6 4.2989 2.4036 7.5688 14 7 2.9981 2.5471 7.6982 15 14 5.4462 3.0477 8.8949 16 1 6.3623 4.0586 8.3086 17 1 4.6474 3.6730 9.9795 18 1 6.2406 1.9231 9.4512 19 6 4.0406 -1.4459 -0.1110 20 6 3.4312 -0.6860 -1.2947 21 1 3.8036 0.3384 -1.3003 22 6 3.8211 -1.3787 -2.6020 23 6 3.3057 -0.7674 -3.9063 24 6 4.7844 -0.6397 -3.5330 25 8 2.0075 -0.6767 -1.1653 26 1 -0.3633 0.5122 0.8910 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3634 -1.0277 -0.0018 29 1 1.5758 -1.7074 1.3214 30 1 1.8031 -0.1397 2.1380 31 1 2.8545 0.2150 3.3224 32 1 5.2967 -0.2110 4.6753 33 1 5.3862 1.3564 3.8365 34 1 3.3072 2.0840 4.9762 35 1 3.2184 0.5164 5.8146 36 1 2.6343 2.9877 8.4820 37 1 3.7756 -2.5012 -0.1766 38 1 5.1252 -1.3378 -0.1245 39 1 3.9022 -2.4646 -2.5528 40 1 2.6891 0.1285 -3.8332 41 1 3.0481 -1.4510 -4.7153 42 1 5.4992 -1.2394 -4.0965 43 1 5.1403 0.3401 -3.2147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366199624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:45 Heat of formation + Delta-G solvation = -51.576900 kcal Electronic energy + Delta-G solvation = -22485.056030 eV Core-core repulsion = 19145.152279 eV Total energy + Delta-G solvation = -3339.903752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53112 -38.82938 -37.10489 -35.00948 -34.59118 -33.00156 -32.59103 -29.94650 -28.60365 -26.48475 -25.01640 -23.63639 -22.59663 -21.59761 -21.02469 -20.81357 -19.59003 -17.99319 -16.94810 -16.53959 -16.11314 -15.94892 -15.36636 -15.26371 -14.66074 -14.50162 -14.18130 -13.93176 -13.59703 -13.30465 -12.91663 -12.72291 -12.47405 -12.28303 -12.13682 -11.80775 -11.70212 -11.32274 -11.18233 -11.02871 -10.97789 -10.66074 -10.64971 -10.43348 -10.34279 -10.16431 -9.90690 -9.54993 -9.28910 -8.71025 -8.45769 -8.20112 -6.10023 -4.12749 2.72680 3.14171 3.31068 3.34729 3.38328 3.47942 3.80189 4.15460 4.32544 4.43793 4.54715 4.61425 4.73833 4.80674 4.86049 4.94369 5.05145 5.17587 5.27084 5.30579 5.37335 5.40190 5.48948 5.59651 5.65640 5.72090 5.77731 5.85967 5.92017 5.96271 6.21347 6.37899 6.46144 6.75138 6.96126 7.00373 7.10740 7.53562 7.61323 7.88743 8.21693 8.33091 8.88840 8.94598 9.51995 11.01653 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.003199 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.789610 B = 8750.133152 C = 9382.491329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.063 0.937 4 C 0.082 3.918 5 N -0.640 5.640 6 C 0.704 3.296 7 O -0.593 6.593 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.014 3.986 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.108 3.892 20 C 0.110 3.890 21 H 0.063 0.937 22 C -0.148 4.148 23 C -0.164 4.164 24 C -0.172 4.172 25 O -0.371 6.371 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -6.742 -20.999 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.081 0.919 4 C -0.042 4.042 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.472 6.472 8 N -0.393 5.393 9 C 0.016 3.984 10 C -0.024 4.024 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.016 4.016 20 C 0.051 3.949 21 H 0.081 0.919 22 C -0.167 4.167 23 C -0.201 4.201 24 C -0.209 4.209 25 O -0.290 6.290 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.494 -6.879 -21.002 22.552 hybrid contribution 0.154 0.519 1.100 1.226 sum -4.340 -6.360 -19.902 21.339 Atomic orbital electron populations 1.21737 0.92082 1.03255 1.03001 1.22466 0.95510 0.95421 0.84996 0.91863 1.22369 0.80985 1.01728 0.99116 1.47316 1.05743 1.68146 1.16696 1.15938 0.84850 0.78529 0.80133 1.90878 1.13772 1.61838 1.80669 1.45705 1.10784 1.61693 1.21162 1.21624 0.92436 0.97368 0.86964 1.19315 0.95638 0.95747 0.91662 1.21010 0.93283 1.37778 1.03959 0.92248 1.24991 0.95155 0.95848 0.98259 1.69941 1.11012 1.43211 1.29200 0.86564 0.80618 0.79231 0.81072 1.20100 1.21244 1.20092 1.22039 1.00787 0.96945 0.81813 1.21977 0.81544 0.98409 0.92961 0.91945 1.22082 1.05324 0.99343 0.89968 1.22834 0.96472 1.03246 0.97509 1.23043 0.93163 1.02077 1.02653 1.87952 1.20552 1.77433 1.43085 0.90483 0.91485 0.91518 0.90573 0.89176 0.77266 0.92628 0.92817 0.96034 0.95983 0.92787 0.91210 0.87972 0.86980 0.88516 0.88662 0.88247 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.79 16 2 C 0.07 0.77 3.40 -26.58 -0.09 0.68 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.08 0.93 5.92 -3.53 -0.02 0.91 16 5 N -0.64 -9.23 3.02 -178.00 -0.54 -9.77 16 6 C 0.70 13.02 8.31 -86.92 -0.72 12.30 16 7 O -0.59 -13.10 15.84 5.29 0.08 -13.02 16 8 N -0.74 -13.59 5.47 -65.23 -0.36 -13.94 16 9 C 0.14 3.03 5.62 -4.04 -0.02 3.01 16 10 C 0.01 0.35 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.11 1.36 5.90 -3.53 -0.02 1.34 16 20 C 0.11 1.20 2.97 -26.58 -0.08 1.12 16 21 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 22 C -0.15 -1.34 5.39 -90.63 -0.49 -1.83 16 23 C -0.16 -1.31 10.16 -26.71 -0.27 -1.58 16 24 C -0.17 -1.35 10.18 -26.71 -0.27 -1.62 16 25 O -0.37 -4.21 9.94 -35.23 -0.35 -4.56 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.97 5.66 -51.93 -0.29 0.68 16 31 H 0.39 6.28 5.98 -40.82 -0.24 6.03 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 38 H 0.10 1.43 7.12 -51.93 -0.37 1.06 16 39 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -32.27 350.20 -9.55 -41.81 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.19 Total: 2.68 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.19 Total: 0.49 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.16 Total: -49.05 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.27 Total: -17.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.27 -9.55 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.764 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds