Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.51594 * 2 1 4 4 C 1.53290 * 109.51467 * 120.10742 * 2 1 3 5 5 N 1.47157 * 108.38618 * 172.22512 * 4 2 1 6 6 C 1.34770 * 120.98566 * 129.44434 * 5 4 2 7 7 O 1.21583 * 120.00303 * 175.03402 * 6 5 4 8 8 N 1.34782 * 119.99972 * 355.02872 * 6 5 4 9 9 C 1.46497 * 120.00296 * 185.08195 * 8 6 5 10 10 C 1.53000 * 109.47193 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.46888 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99573 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47142 * 60.00446 * 15 13 11 17 17 H 1.48505 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47160 * 299.99842 * 15 13 11 19 19 C 1.47157 * 118.03295 * 309.46070 * 5 4 2 20 20 C 1.53302 * 108.38310 * 50.53737 * 19 5 4 21 21 H 1.09000 * 109.50997 * 67.66525 * 20 19 5 22 22 C 1.52998 * 109.51232 * 187.77015 * 20 19 5 23 23 C 1.52990 * 117.49850 * 179.97438 * 22 20 19 24 24 C 1.52998 * 117.49908 * 248.62352 * 22 20 19 25 25 O 1.42963 * 109.22225 * 307.69823 * 20 19 5 26 26 H 1.09000 * 109.46743 * 299.89223 * 1 2 3 27 27 H 1.09002 * 109.47268 * 59.89515 * 1 2 3 28 28 H 1.09001 * 109.47241 * 179.89804 * 1 2 3 29 29 H 1.09001 * 109.68650 * 52.49951 * 4 2 1 30 30 H 1.09002 * 109.71373 * 291.96552 * 4 2 1 31 31 H 0.97007 * 119.99657 * 5.08662 * 8 6 5 32 32 H 1.08998 * 109.47295 * 300.00222 * 9 8 6 33 33 H 1.09006 * 109.46741 * 60.00478 * 9 8 6 34 34 H 1.08998 * 109.47074 * 300.00226 * 10 9 8 35 35 H 1.08998 * 109.46870 * 60.00177 * 10 9 8 36 36 H 0.97000 * 120.00099 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.68464 * 290.81376 * 19 5 4 38 38 H 1.08996 * 109.67972 * 170.26012 * 19 5 4 39 39 H 1.09003 * 115.55696 * 34.31382 * 22 20 19 40 40 H 1.09001 * 117.49982 * 0.02562 * 23 22 20 41 41 H 1.09001 * 117.50182 * 214.98021 * 23 22 20 42 42 H 1.08999 * 117.49852 * 145.02560 * 24 22 20 43 43 H 1.08997 * 117.51868 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7248 1.2499 5 7 3.5012 -0.8758 1.1338 6 6 4.3195 -0.5027 2.1376 7 8 5.5136 -0.7180 2.0605 8 7 3.8140 0.1092 3.2270 9 6 4.7136 0.6144 4.2669 10 6 3.8906 1.2587 5.3843 11 6 4.8161 1.7778 6.4544 12 1 5.8843 1.6604 6.3480 13 6 4.2989 2.4036 7.5688 14 7 2.9981 2.5471 7.6982 15 14 5.4462 3.0477 8.8949 16 1 6.3623 4.0586 8.3086 17 1 4.6474 3.6730 9.9795 18 1 6.2406 1.9231 9.4512 19 6 4.0406 -1.4459 -0.1110 20 6 3.4312 -0.6860 -1.2947 21 1 3.8036 0.3384 -1.3003 22 6 3.8211 -1.3787 -2.6020 23 6 3.3057 -0.7674 -3.9063 24 6 4.7844 -0.6397 -3.5330 25 8 2.0075 -0.6767 -1.1653 26 1 -0.3633 0.5122 0.8910 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3634 -1.0277 -0.0018 29 1 1.5758 -1.7074 1.3214 30 1 1.8031 -0.1397 2.1380 31 1 2.8545 0.2150 3.3224 32 1 5.2967 -0.2110 4.6753 33 1 5.3862 1.3564 3.8365 34 1 3.3072 2.0840 4.9762 35 1 3.2184 0.5164 5.8146 36 1 2.6343 2.9877 8.4820 37 1 3.7756 -2.5012 -0.1766 38 1 5.1252 -1.3378 -0.1245 39 1 3.9022 -2.4646 -2.5528 40 1 2.6891 0.1285 -3.8332 41 1 3.0481 -1.4510 -4.7153 42 1 5.4992 -1.2394 -4.0965 43 1 5.1403 0.3401 -3.2147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366199624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = -71.760665 kcal Electronic energy + Delta-G solvation = -22485.931264 eV Core-core repulsion = 19145.152279 eV Total energy + Delta-G solvation = -3340.778986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71852 -40.00557 -37.86147 -36.72828 -35.82102 -34.84229 -33.59005 -31.66409 -29.76074 -27.48790 -26.75079 -24.84856 -23.26780 -22.89064 -22.51650 -21.59065 -20.94543 -19.30105 -18.52330 -17.82058 -17.39485 -17.03884 -16.67344 -16.45750 -16.11082 -15.78671 -15.45803 -15.24778 -14.99026 -14.41358 -14.28349 -13.99921 -13.62663 -13.32197 -13.16889 -12.96635 -12.93031 -12.56625 -12.51026 -12.39462 -12.25763 -12.12184 -11.89686 -11.68701 -11.51144 -11.36116 -11.30435 -11.07040 -11.03769 -10.60710 -10.18939 -9.49847 -8.24460 -6.34851 1.40975 1.44285 1.46711 1.53169 2.00911 2.35561 2.40350 2.85735 3.10306 3.10383 3.48544 3.72666 3.79752 3.93053 3.98965 4.05067 4.16258 4.20825 4.35083 4.42195 4.47784 4.48759 4.52981 4.64285 4.79404 4.81272 4.83319 4.91232 5.00541 5.03683 5.22369 5.23668 5.27439 5.28606 5.33065 5.47667 5.56873 5.74534 5.82258 6.13516 6.15728 6.77409 6.86284 7.34327 7.43683 8.87299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.003199 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.789610 B = 8750.133152 C = 9382.491329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.055 0.945 4 C 0.077 3.923 5 N -0.634 5.634 6 C 0.701 3.299 7 O -0.633 6.633 8 N -0.733 5.733 9 C 0.159 3.841 10 C 0.026 3.974 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.106 3.894 20 C 0.117 3.883 21 H 0.050 0.950 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.169 4.169 25 O -0.374 6.374 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.404 0.596 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -7.016 -21.740 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.073 0.927 4 C -0.045 4.045 5 N -0.372 5.372 6 C 0.403 3.597 7 O -0.515 6.515 8 N -0.389 5.389 9 C 0.035 3.965 10 C -0.012 4.012 11 C -0.587 4.587 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.017 4.017 20 C 0.058 3.942 21 H 0.068 0.932 22 C -0.179 4.179 23 C -0.195 4.195 24 C -0.206 4.206 25 O -0.294 6.294 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.242 0.758 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.064 -7.165 -21.784 23.484 hybrid contribution 0.266 0.583 1.275 1.427 sum -4.798 -6.582 -20.509 22.067 Atomic orbital electron populations 1.21736 0.89959 1.03942 1.03870 1.22554 0.97061 0.94650 0.84130 0.92690 1.22636 0.78905 1.02960 1.00043 1.47364 1.06826 1.66912 1.16049 1.16036 0.84682 0.78385 0.80595 1.90845 1.15696 1.63405 1.81539 1.45404 1.11009 1.61791 1.20729 1.21125 0.92063 0.96459 0.86830 1.19109 0.95142 0.94927 0.91983 1.21424 0.93784 1.38331 1.05141 0.92297 1.25853 0.96749 0.95912 1.00510 1.70041 1.12642 1.43771 1.30034 0.85505 0.78636 0.78786 0.78169 1.19335 1.20510 1.19404 1.22192 1.00049 0.97929 0.81558 1.21897 0.81366 0.97679 0.93249 0.93174 1.22100 1.06636 0.99774 0.89350 1.22889 0.96386 1.03097 0.97092 1.23122 0.93512 1.01881 1.02082 1.87966 1.20532 1.77446 1.43414 0.89276 0.90996 0.90895 0.88970 0.88707 0.75806 0.93791 0.93726 0.97220 0.97317 0.92485 0.89823 0.89586 0.86070 0.89135 0.87116 0.86714 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.57 71.98 0.69 -1.21 16 2 C 0.07 1.44 3.40 30.69 0.10 1.54 16 3 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.08 1.65 5.92 86.35 0.51 2.16 16 5 N -0.63 -17.98 3.02 -835.33 -2.52 -20.50 16 6 C 0.70 26.09 8.31 179.06 1.49 27.58 16 7 O -0.63 -28.50 15.84 -3.98 -0.06 -28.56 16 8 N -0.73 -27.10 5.47 -478.54 -2.62 -29.72 16 9 C 0.16 7.08 5.62 86.38 0.49 7.57 16 10 C 0.03 1.32 5.09 29.85 0.15 1.47 16 11 C -0.55 -30.76 9.11 25.60 0.23 -30.52 16 12 H 0.06 3.23 7.74 -2.92 -0.02 3.21 16 13 C 0.01 0.49 5.46 84.66 0.46 0.95 16 14 N -0.93 -53.99 13.29 21.45 0.28 -53.70 16 15 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 C 0.11 2.62 5.90 86.36 0.51 3.13 16 20 C 0.12 2.47 2.97 30.69 0.09 2.56 16 21 H 0.05 1.18 7.90 -2.39 -0.02 1.16 16 22 C -0.16 -2.66 5.39 -10.80 -0.06 -2.72 16 23 C -0.16 -2.25 10.16 30.61 0.31 -1.93 16 24 C -0.17 -2.42 10.18 30.61 0.31 -2.10 16 25 O -0.37 -7.95 9.94 -148.98 -1.48 -9.43 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.93 5.66 -2.39 -0.01 1.91 16 31 H 0.40 12.83 5.98 -92.70 -0.55 12.27 16 32 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 2.05 8.14 -2.38 -0.02 2.04 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 38 H 0.09 2.44 7.12 -2.39 -0.02 2.42 16 39 H 0.12 1.79 8.10 -2.39 -0.02 1.78 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.40 8.05 -2.39 -0.02 1.38 16 Total: -1.00 -68.54 350.20 1.35 -67.19 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.43 Total: 20.67 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.29 Total: 8.47 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -4.86 Total: -103.93 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.54 Total: -37.99 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.54 1.35 -67.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.573 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds