Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51311 * 2 1 4 4 C 1.53716 * 109.69978 * 239.87086 * 2 1 3 5 5 N 1.47155 * 108.16089 * 292.54691 * 4 2 1 6 6 C 1.34776 * 120.97813 * 129.42720 * 5 4 2 7 7 O 1.21581 * 120.00263 * 4.71655 * 6 5 4 8 8 N 1.34784 * 119.99468 * 184.70239 * 6 5 4 9 9 C 1.46495 * 119.99446 * 174.92128 * 8 6 5 10 10 C 1.53001 * 109.47083 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47510 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00451 * 179.72355 * 11 10 9 14 14 N 1.31510 * 119.99387 * 0.27339 * 13 11 10 15 15 Si 1.86793 * 120.00301 * 180.27623 * 13 11 10 16 16 H 1.48497 * 109.47250 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47343 * 120.00093 * 15 13 11 18 18 H 1.48499 * 109.47203 * 240.00310 * 15 13 11 19 19 C 1.47149 * 118.03742 * 309.15823 * 5 4 2 20 20 C 1.53297 * 108.38519 * 50.78503 * 19 5 4 21 21 H 1.09005 * 109.51483 * 67.62037 * 20 19 5 22 22 C 1.53000 * 109.51520 * 187.72768 * 20 19 5 23 23 C 1.53004 * 117.49477 * 248.75103 * 22 20 19 24 24 C 1.53004 * 117.49991 * 180.08854 * 22 20 19 25 25 O 1.42963 * 109.22505 * 307.69919 * 20 19 5 26 26 H 1.09003 * 109.46894 * 299.89706 * 1 2 3 27 27 H 1.08999 * 109.47072 * 59.89730 * 1 2 3 28 28 H 1.08994 * 109.47077 * 179.89761 * 1 2 3 29 29 H 1.08996 * 109.83507 * 172.86542 * 4 2 1 30 30 H 1.09000 * 109.74212 * 52.17130 * 4 2 1 31 31 H 0.96999 * 119.99911 * 354.92836 * 8 6 5 32 32 H 1.09001 * 109.47775 * 60.00757 * 9 8 6 33 33 H 1.09002 * 109.47608 * 300.00372 * 9 8 6 34 34 H 1.08998 * 109.47110 * 60.00096 * 10 9 8 35 35 H 1.09005 * 109.47299 * 300.00288 * 10 9 8 36 36 H 0.96999 * 120.00127 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.68249 * 170.50619 * 19 5 4 38 38 H 1.09002 * 109.68061 * 291.06624 * 19 5 4 39 39 H 1.08992 * 115.55274 * 34.41538 * 22 20 19 40 40 H 1.09002 * 117.50361 * 359.97438 * 23 22 20 41 41 H 1.08997 * 117.50118 * 145.01998 * 23 22 20 42 42 H 1.08996 * 117.49634 * 214.97251 * 24 22 20 43 43 H 1.08998 * 117.49604 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0482 -0.7264 -1.2517 5 7 1.6981 -2.1508 -1.1333 6 6 1.0745 -2.7977 -2.1378 7 8 0.8698 -2.2289 -3.1927 8 7 0.6782 -4.0754 -1.9730 9 6 -0.0970 -4.7427 -3.0218 10 6 -0.4165 -6.1744 -2.5869 11 6 -1.2134 -6.8612 -3.6659 12 1 -1.4663 -6.3299 -4.5715 13 6 -1.6144 -8.1699 -3.4997 14 7 -1.3060 -8.8171 -2.3972 15 14 -2.5955 -9.0237 -4.8405 16 1 -2.8105 -8.0847 -5.9707 17 1 -1.8473 -10.2134 -5.3202 18 1 -3.9093 -9.4515 -4.2964 19 6 2.0542 -2.8494 0.1119 20 6 1.5406 -2.0209 1.2950 21 1 0.4506 -2.0290 1.2993 22 6 2.0612 -2.6202 2.6029 23 6 1.0417 -3.2834 3.5312 24 6 1.6539 -1.9316 3.9071 25 8 2.0076 -0.6759 1.1658 26 1 -0.3633 0.5123 0.8909 27 1 -0.3633 0.5154 -0.8891 28 1 -0.3633 -1.0276 -0.0018 29 1 3.1307 -0.6189 -1.3201 30 1 1.5799 -0.3060 -2.1417 31 1 0.9062 -4.5529 -1.1601 32 1 0.4828 -4.7640 -3.9445 33 1 -1.0263 -4.1982 -3.1890 34 1 -0.9966 -6.1530 -1.6643 35 1 0.5126 -6.7193 -2.4193 36 1 -1.5883 -9.7376 -2.2800 37 1 1.5899 -3.8355 0.1253 38 1 3.1373 -2.9520 0.1784 39 1 3.0581 -3.0584 2.5553 40 1 0.0000 -3.2924 3.2104 41 1 1.3680 -4.1576 4.0946 42 1 2.3826 -1.9171 4.7175 43 1 1.0153 -1.0513 3.8332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366199625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = -48.436629 kcal Electronic energy + Delta-G solvation = -22857.537604 eV Core-core repulsion = 19517.770024 eV Total energy + Delta-G solvation = -3339.767579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66737 -38.85079 -37.04585 -34.94936 -34.63687 -32.92437 -32.20515 -29.64271 -29.11898 -26.54993 -24.49904 -24.43378 -22.54722 -21.79528 -20.95366 -20.38481 -19.31326 -18.03746 -16.75105 -16.59394 -16.34136 -15.76521 -15.36872 -15.02286 -14.69619 -14.46065 -14.32571 -14.06622 -13.59493 -13.53924 -13.04546 -12.61403 -12.29484 -12.18593 -12.07980 -11.74456 -11.54291 -11.49800 -11.15810 -11.05806 -10.86695 -10.63457 -10.59287 -10.40507 -10.34851 -10.09994 -9.88379 -9.54992 -9.25664 -8.69378 -8.45839 -8.18508 -6.10126 -4.12622 2.74946 3.21617 3.28058 3.35751 3.41134 3.49461 3.84062 4.17720 4.35183 4.43570 4.54410 4.68188 4.77362 4.85044 4.87683 4.93548 5.06647 5.14079 5.26400 5.27234 5.46160 5.49942 5.54321 5.63844 5.70172 5.71549 5.78273 5.91354 5.94196 6.05764 6.22261 6.38124 6.48639 6.75456 6.96900 6.99822 7.11679 7.54285 7.61603 7.89000 8.22310 8.33754 8.89809 8.95360 9.52258 11.01636 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.003803 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.089621 B = 7360.379542 C = 8372.803806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 H 0.112 0.888 4 C 0.102 3.898 5 N -0.637 5.637 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.087 3.913 20 C 0.106 3.894 21 H 0.069 0.931 22 C -0.151 4.151 23 C -0.171 4.171 24 C -0.164 4.164 25 O -0.368 6.368 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.392 0.608 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 15.346 12.484 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 H 0.130 0.870 4 C -0.022 4.022 5 N -0.376 5.376 6 C 0.406 3.594 7 O -0.472 6.472 8 N -0.394 5.394 9 C 0.016 3.984 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.037 4.037 20 C 0.048 3.952 21 H 0.087 0.913 22 C -0.170 4.170 23 C -0.208 4.208 24 C -0.201 4.201 25 O -0.287 6.287 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.227 0.773 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.192 15.647 11.873 20.917 hybrid contribution -0.521 -1.004 -0.436 1.212 sum 6.671 14.643 11.437 19.741 Atomic orbital electron populations 1.22350 0.95819 1.03098 1.02647 1.22708 0.94185 0.96422 0.85110 0.86998 1.22195 1.00380 0.80263 0.99321 1.47261 1.63537 1.10782 1.16040 1.15931 0.78279 0.82052 0.83150 1.90875 1.62684 1.67707 1.25946 1.45706 1.58745 1.11508 1.23422 1.21613 0.93252 0.94805 0.88689 1.19326 0.97267 0.88302 0.97556 1.21085 1.34279 0.97267 1.03235 0.92162 1.24991 0.96106 0.97375 0.95797 1.69963 1.46352 1.11230 1.25782 0.86459 0.79702 0.79500 0.81930 1.19564 1.20927 1.20942 1.22265 1.01165 0.96427 0.83827 1.21952 0.98083 0.82577 0.92628 0.91294 1.22112 1.00244 1.04572 0.90052 1.23070 0.98410 0.96799 1.02565 1.22829 1.03576 0.96217 0.97452 1.88007 1.72360 1.24988 1.43355 0.91911 0.91199 0.91916 0.91202 0.88044 0.77254 0.92657 0.92848 0.96021 0.95979 0.92916 0.89143 0.90634 0.86995 0.88477 0.88119 0.88703 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.82 37.16 0.33 -1.57 16 2 C 0.07 0.75 3.93 -26.36 -0.10 0.65 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.10 1.23 6.04 -3.31 -0.02 1.21 16 5 N -0.64 -8.93 2.53 -177.74 -0.45 -9.38 16 6 C 0.70 12.81 8.31 -86.91 -0.72 12.08 16 7 O -0.59 -12.91 15.84 5.29 0.08 -12.82 16 8 N -0.74 -13.50 5.47 -65.23 -0.36 -13.86 16 9 C 0.14 3.03 5.62 -4.04 -0.02 3.00 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.09 1.00 5.90 -3.53 -0.02 0.98 16 20 C 0.11 1.11 2.58 -26.58 -0.07 1.05 16 21 H 0.07 0.78 6.02 -51.93 -0.31 0.46 16 22 C -0.15 -1.36 5.39 -90.62 -0.49 -1.85 16 23 C -0.17 -1.42 10.18 -26.68 -0.27 -1.69 16 24 C -0.16 -1.35 10.17 -26.69 -0.27 -1.62 16 25 O -0.37 -4.09 10.14 -35.23 -0.36 -4.44 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.78 6.12 -51.93 -0.32 0.46 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.33 7.12 -51.93 -0.37 0.96 16 31 H 0.39 6.30 5.98 -40.82 -0.24 6.05 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.01 5.66 -51.93 -0.29 0.72 16 38 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -32.03 345.52 -9.36 -41.39 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.99 Total: 3.65 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.21 Total: -0.79 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.07 Total: -48.53 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.03 -9.36 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.046 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds