Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51311 * 2 1 4 4 C 1.53716 * 109.69978 * 239.87086 * 2 1 3 5 5 N 1.47155 * 108.16089 * 292.54691 * 4 2 1 6 6 C 1.34776 * 120.97813 * 129.42720 * 5 4 2 7 7 O 1.21581 * 120.00263 * 4.71655 * 6 5 4 8 8 N 1.34784 * 119.99468 * 184.70239 * 6 5 4 9 9 C 1.46495 * 119.99446 * 174.92128 * 8 6 5 10 10 C 1.53001 * 109.47083 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47510 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00451 * 179.72355 * 11 10 9 14 14 N 1.31510 * 119.99387 * 0.27339 * 13 11 10 15 15 Si 1.86793 * 120.00301 * 180.27623 * 13 11 10 16 16 H 1.48497 * 109.47250 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47343 * 120.00093 * 15 13 11 18 18 H 1.48499 * 109.47203 * 240.00310 * 15 13 11 19 19 C 1.47149 * 118.03742 * 309.15823 * 5 4 2 20 20 C 1.53297 * 108.38519 * 50.78503 * 19 5 4 21 21 H 1.09005 * 109.51483 * 67.62037 * 20 19 5 22 22 C 1.53000 * 109.51520 * 187.72768 * 20 19 5 23 23 C 1.53004 * 117.49477 * 248.75103 * 22 20 19 24 24 C 1.53004 * 117.49991 * 180.08854 * 22 20 19 25 25 O 1.42963 * 109.22505 * 307.69919 * 20 19 5 26 26 H 1.09003 * 109.46894 * 299.89706 * 1 2 3 27 27 H 1.08999 * 109.47072 * 59.89730 * 1 2 3 28 28 H 1.08994 * 109.47077 * 179.89761 * 1 2 3 29 29 H 1.08996 * 109.83507 * 172.86542 * 4 2 1 30 30 H 1.09000 * 109.74212 * 52.17130 * 4 2 1 31 31 H 0.96999 * 119.99911 * 354.92836 * 8 6 5 32 32 H 1.09001 * 109.47775 * 60.00757 * 9 8 6 33 33 H 1.09002 * 109.47608 * 300.00372 * 9 8 6 34 34 H 1.08998 * 109.47110 * 60.00096 * 10 9 8 35 35 H 1.09005 * 109.47299 * 300.00288 * 10 9 8 36 36 H 0.96999 * 120.00127 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.68249 * 170.50619 * 19 5 4 38 38 H 1.09002 * 109.68061 * 291.06624 * 19 5 4 39 39 H 1.08992 * 115.55274 * 34.41538 * 22 20 19 40 40 H 1.09002 * 117.50361 * 359.97438 * 23 22 20 41 41 H 1.08997 * 117.50118 * 145.01998 * 23 22 20 42 42 H 1.08996 * 117.49634 * 214.97251 * 24 22 20 43 43 H 1.08998 * 117.49604 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0482 -0.7264 -1.2517 5 7 1.6981 -2.1508 -1.1333 6 6 1.0745 -2.7977 -2.1378 7 8 0.8698 -2.2289 -3.1927 8 7 0.6782 -4.0754 -1.9730 9 6 -0.0970 -4.7427 -3.0218 10 6 -0.4165 -6.1744 -2.5869 11 6 -1.2134 -6.8612 -3.6659 12 1 -1.4663 -6.3299 -4.5715 13 6 -1.6144 -8.1699 -3.4997 14 7 -1.3060 -8.8171 -2.3972 15 14 -2.5955 -9.0237 -4.8405 16 1 -2.8105 -8.0847 -5.9707 17 1 -1.8473 -10.2134 -5.3202 18 1 -3.9093 -9.4515 -4.2964 19 6 2.0542 -2.8494 0.1119 20 6 1.5406 -2.0209 1.2950 21 1 0.4506 -2.0290 1.2993 22 6 2.0612 -2.6202 2.6029 23 6 1.0417 -3.2834 3.5312 24 6 1.6539 -1.9316 3.9071 25 8 2.0076 -0.6759 1.1658 26 1 -0.3633 0.5123 0.8909 27 1 -0.3633 0.5154 -0.8891 28 1 -0.3633 -1.0276 -0.0018 29 1 3.1307 -0.6189 -1.3201 30 1 1.5799 -0.3060 -2.1417 31 1 0.9062 -4.5529 -1.1601 32 1 0.4828 -4.7640 -3.9445 33 1 -1.0263 -4.1982 -3.1890 34 1 -0.9966 -6.1530 -1.6643 35 1 0.5126 -6.7193 -2.4193 36 1 -1.5883 -9.7376 -2.2800 37 1 1.5899 -3.8355 0.1253 38 1 3.1373 -2.9520 0.1784 39 1 3.0581 -3.0584 2.5553 40 1 0.0000 -3.2924 3.2104 41 1 1.3680 -4.1576 4.0946 42 1 2.3826 -1.9171 4.7175 43 1 1.0153 -1.0513 3.8332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366199625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -68.219130 kcal Electronic energy + Delta-G solvation = -22858.395437 eV Core-core repulsion = 19517.770024 eV Total energy + Delta-G solvation = -3340.625413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79927 -40.04692 -37.80972 -36.66021 -35.84924 -34.81531 -33.20714 -31.45321 -30.08414 -27.82135 -26.26246 -25.38804 -23.28360 -23.09888 -22.42888 -21.38437 -20.46415 -19.29750 -18.52781 -17.71309 -17.43761 -17.02101 -16.63854 -16.45597 -15.91709 -15.62143 -15.48844 -15.40012 -14.99225 -14.53072 -14.48041 -14.25784 -13.55973 -13.36103 -13.04301 -12.96113 -12.93553 -12.52733 -12.41517 -12.36589 -12.28670 -12.25578 -11.75832 -11.68866 -11.49643 -11.34044 -11.28631 -10.99966 -10.94490 -10.61399 -10.16333 -9.44249 -8.24507 -6.34721 1.41143 1.41752 1.50543 1.56492 2.04696 2.39876 2.44367 2.85216 3.10524 3.17201 3.52218 3.68606 3.87856 3.93738 4.01655 4.10792 4.16462 4.26515 4.27628 4.42803 4.46817 4.48909 4.54993 4.68120 4.78614 4.81147 4.83536 4.84428 4.93232 5.07833 5.15091 5.26137 5.27449 5.30938 5.37372 5.49289 5.56969 5.75976 5.84207 6.14882 6.16042 6.78026 6.88616 7.34653 7.47008 8.87705 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.003803 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.089621 B = 7360.379542 C = 8372.803806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 H 0.142 0.858 4 C 0.097 3.903 5 N -0.629 5.629 6 C 0.702 3.298 7 O -0.633 6.633 8 N -0.734 5.734 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.083 3.917 20 C 0.111 3.889 21 H 0.059 0.941 22 C -0.159 4.159 23 C -0.172 4.172 24 C -0.158 4.158 25 O -0.371 6.371 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.403 0.597 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 15.852 13.271 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.022 3.978 3 H 0.159 0.841 4 C -0.026 4.026 5 N -0.367 5.367 6 C 0.404 3.596 7 O -0.514 6.514 8 N -0.391 5.391 9 C 0.036 3.964 10 C -0.012 4.012 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.040 4.040 20 C 0.053 3.947 21 H 0.077 0.923 22 C -0.177 4.177 23 C -0.209 4.209 24 C -0.195 4.195 25 O -0.290 6.290 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.678 16.174 12.715 21.959 hybrid contribution -0.630 -1.118 -0.622 1.426 sum 7.048 15.056 12.093 20.557 Atomic orbital electron populations 1.22324 0.96210 1.01751 1.03309 1.22797 0.93815 0.97390 0.83833 0.84083 1.22422 1.01280 0.78955 0.99940 1.47284 1.62051 1.11607 1.15730 1.16018 0.78394 0.81695 0.83493 1.90843 1.64323 1.68440 1.27840 1.45415 1.58639 1.11915 1.23133 1.21104 0.93089 0.93196 0.89018 1.19119 0.95959 0.89739 0.96431 1.21472 1.35011 0.98053 1.03912 0.92333 1.25846 0.97015 0.98033 0.98091 1.70058 1.47229 1.11739 1.27486 0.85399 0.78283 0.78331 0.79055 1.19027 1.20200 1.20159 1.22484 1.02137 0.96443 0.82891 1.21901 0.97543 0.82375 0.92926 0.92288 1.22132 1.00837 1.05218 0.89531 1.23122 0.97979 0.97420 1.02361 1.22882 1.03558 0.95891 0.97207 1.88016 1.72380 1.25109 1.43489 0.90589 0.91200 0.94221 0.89658 0.89385 0.75928 0.93832 0.93764 0.97269 0.97378 0.92516 0.89161 0.89081 0.86038 0.89114 0.87047 0.87342 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.82 71.98 0.63 -2.91 16 2 C 0.08 1.46 3.93 30.84 0.12 1.58 16 3 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.10 2.21 6.04 86.50 0.52 2.73 16 5 N -0.63 -17.24 2.53 -834.52 -2.11 -19.35 16 6 C 0.70 25.69 8.31 179.05 1.49 27.18 16 7 O -0.63 -27.97 15.84 -3.97 -0.06 -28.03 16 8 N -0.73 -27.17 5.47 -478.54 -2.62 -29.79 16 9 C 0.16 7.12 5.62 86.38 0.49 7.60 16 10 C 0.03 1.28 5.09 29.85 0.15 1.43 16 11 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.01 0.50 5.46 84.66 0.46 0.97 16 14 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 15 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 C 0.08 1.81 5.90 86.35 0.51 2.32 16 20 C 0.11 2.18 2.58 30.69 0.08 2.26 16 21 H 0.06 1.29 6.02 -2.38 -0.01 1.28 16 22 C -0.16 -2.56 5.39 -10.79 -0.06 -2.62 16 23 C -0.17 -2.58 10.18 30.62 0.31 -2.27 16 24 C -0.16 -2.29 10.17 30.62 0.31 -1.98 16 25 O -0.37 -7.44 10.14 -148.98 -1.51 -8.95 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 0.97 6.12 -2.39 -0.01 0.95 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.28 7.12 -2.39 -0.02 2.27 16 31 H 0.40 13.00 5.98 -92.71 -0.55 12.44 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.09 1.95 5.66 -2.39 -0.01 1.94 16 38 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 39 H 0.12 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 41 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -68.06 345.52 1.70 -66.36 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.44 Total: 22.00 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.25 Total: 5.86 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -4.45 Total: -102.87 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.57 Total: -36.98 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.06 1.70 -66.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds