Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.51707 * 2 1 4 4 C 1.53307 * 109.50964 * 239.89923 * 2 1 3 5 5 N 1.47147 * 108.38362 * 187.72236 * 4 2 1 6 6 C 1.34777 * 120.98300 * 230.55685 * 5 4 2 7 7 O 1.21585 * 120.00010 * 174.76032 * 6 5 4 8 8 N 1.34773 * 119.99811 * 354.76625 * 6 5 4 9 9 C 1.46503 * 119.99913 * 184.97321 * 8 6 5 10 10 C 1.52997 * 109.47244 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47316 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99958 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47287 * 59.99884 * 15 13 11 17 17 H 1.48502 * 109.47064 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46916 * 299.99677 * 15 13 11 19 19 C 1.47151 * 118.03673 * 50.54141 * 5 4 2 20 20 C 1.53304 * 108.38230 * 309.46193 * 19 5 4 21 21 H 1.09005 * 109.51103 * 292.32751 * 20 19 5 22 22 C 1.53005 * 109.51163 * 172.22817 * 20 19 5 23 23 C 1.53001 * 117.49660 * 180.10003 * 22 20 19 24 24 C 1.52999 * 59.99986 * 107.48797 * 23 22 20 25 25 O 1.42954 * 109.26416 * 52.27531 * 20 19 5 26 26 H 1.08996 * 109.47317 * 180.09710 * 1 2 3 27 27 H 1.08997 * 109.46419 * 300.09694 * 1 2 3 28 28 H 1.08993 * 109.47185 * 60.09574 * 1 2 3 29 29 H 1.09005 * 109.67504 * 68.00302 * 4 2 1 30 30 H 1.08996 * 109.71247 * 307.47019 * 4 2 1 31 31 H 0.97001 * 120.00108 * 4.97606 * 8 6 5 32 32 H 1.08998 * 109.47413 * 300.00089 * 9 8 6 33 33 H 1.09006 * 109.46625 * 59.99942 * 9 8 6 34 34 H 1.08998 * 109.47206 * 300.00482 * 10 9 8 35 35 H 1.09000 * 109.47365 * 60.00140 * 10 9 8 36 36 H 0.97001 * 120.00116 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.68283 * 189.74174 * 19 5 4 38 38 H 1.08997 * 109.71528 * 69.19683 * 19 5 4 39 39 H 1.08998 * 115.56378 * 34.41236 * 22 20 19 40 40 H 1.09001 * 117.49939 * 359.97438 * 23 22 20 41 41 H 1.08996 * 117.49955 * 214.97884 * 23 22 20 42 42 H 1.08997 * 117.50247 * 107.48584 * 24 23 22 43 43 H 1.09003 * 117.50031 * 252.48918 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2502 5 7 3.5013 -0.8747 -1.1347 6 6 4.3187 -0.5011 -2.1391 7 8 5.5246 -0.5436 -1.9892 8 7 3.7995 -0.0805 -3.3095 9 6 4.6847 0.2215 -4.4371 10 6 3.8480 0.6743 -5.6353 11 6 4.7584 0.9843 -6.7954 12 1 5.8271 0.8703 -6.6886 13 6 4.2273 1.4146 -7.9928 14 7 2.9261 1.5539 -8.1227 15 14 5.3559 1.7982 -9.4311 16 1 6.1239 0.5808 -9.7961 17 1 4.5437 2.2378 -10.5940 18 1 6.2971 2.8806 -9.0466 19 6 4.0417 -1.4442 0.1098 20 6 3.4323 -0.6845 1.2937 21 1 3.8040 0.3402 1.2990 22 6 3.8234 -1.3767 2.6010 23 6 3.3067 -0.7666 3.9055 24 6 2.7148 -2.0789 3.3876 25 8 2.0085 -0.6752 1.1656 26 1 -0.3634 -1.0276 0.0017 27 1 -0.3632 0.5153 0.8891 28 1 -0.3633 0.5123 -0.8908 29 1 1.8022 -0.1393 -2.1378 30 1 1.5764 -1.7076 -1.3219 31 1 2.8397 0.0224 -3.4052 32 1 5.3750 1.0163 -4.1544 33 1 5.2491 -0.6716 -4.7052 34 1 3.1580 -0.1208 -5.9178 35 1 3.2832 1.5673 -5.3675 36 1 2.5523 1.8562 -8.9652 37 1 5.1262 -1.3352 0.1228 38 1 3.7779 -2.4997 0.1761 39 1 4.8148 -1.8294 2.6152 40 1 2.6885 0.1282 3.8324 41 1 3.9582 -0.8179 4.7778 42 1 2.9769 -2.9937 3.9192 43 1 1.7067 -2.0479 2.9741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366199626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -51.597126 kcal Electronic energy + Delta-G solvation = -22517.070664 eV Core-core repulsion = 19177.166035 eV Total energy + Delta-G solvation = -3339.904629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55701 -38.88495 -36.94828 -35.01473 -34.57264 -32.98755 -32.55927 -29.98382 -28.67036 -26.50596 -25.02477 -23.59309 -22.62057 -21.73093 -21.02280 -20.55100 -19.59751 -17.99494 -16.84006 -16.49271 -16.10923 -15.94462 -15.51568 -15.17937 -14.70941 -14.51943 -14.27822 -13.89488 -13.59920 -13.24105 -12.87256 -12.74682 -12.50433 -12.27773 -12.12413 -11.77589 -11.65682 -11.41314 -11.18044 -11.02945 -10.97456 -10.65658 -10.56927 -10.47464 -10.32750 -10.04154 -9.88584 -9.55461 -9.28896 -8.71358 -8.45642 -8.19744 -6.09962 -4.12673 2.74766 3.28570 3.31121 3.34780 3.38364 3.47760 3.63175 4.17090 4.35704 4.44062 4.54664 4.66327 4.75390 4.82938 4.85841 5.03781 5.12639 5.16110 5.27156 5.27580 5.36729 5.46422 5.48893 5.61742 5.67560 5.72178 5.80521 5.90490 5.93902 6.05791 6.21297 6.37979 6.46385 6.75225 6.96096 6.98681 7.10779 7.53634 7.61417 7.88813 8.21761 8.33146 8.88832 8.94635 9.52070 11.01726 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.003099 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.040600 B = 9032.112986 C = 9663.252841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.063 0.937 4 C 0.083 3.917 5 N -0.640 5.640 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.014 3.986 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.107 3.893 20 C 0.109 3.891 21 H 0.066 0.934 22 C -0.154 4.154 23 C -0.173 4.173 24 C -0.163 4.163 25 O -0.372 6.372 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.392 0.608 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -5.320 21.655 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.081 0.919 4 C -0.041 4.041 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.472 6.472 8 N -0.393 5.393 9 C 0.016 3.984 10 C -0.024 4.024 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.017 4.017 20 C 0.051 3.949 21 H 0.084 0.916 22 C -0.173 4.173 23 C -0.210 4.210 24 C -0.200 4.200 25 O -0.292 6.292 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.227 0.773 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.058 -5.386 21.689 22.913 hybrid contribution 0.199 0.405 -1.151 1.236 sum -4.859 -4.982 20.538 21.685 Atomic orbital electron populations 1.21735 0.92089 1.03267 1.02989 1.22452 0.95443 0.95416 0.84952 0.91895 1.22356 0.81021 1.01731 0.99031 1.47306 1.05709 1.68079 1.16774 1.15938 0.84986 0.78177 0.80338 1.90876 1.12671 1.61838 1.81843 1.45696 1.10912 1.70933 1.11747 1.21624 0.92773 0.99553 0.84442 1.19313 0.95531 0.96779 0.90738 1.21009 0.93438 1.45325 0.96246 0.92252 1.24990 0.95128 0.95322 0.98817 1.69941 1.10689 1.46743 1.26000 0.86563 0.80518 0.78905 0.81495 1.20098 1.21245 1.20093 1.22031 1.00731 0.97023 0.81874 1.21869 0.81371 0.98660 0.93008 0.91620 1.22220 0.99463 1.04961 0.90616 1.22925 1.03817 0.97871 0.96417 1.22855 0.99017 0.95587 1.02495 1.87897 1.20645 1.77511 1.43133 0.91501 0.91516 0.90490 0.89223 0.90572 0.77277 0.92659 0.92779 0.96002 0.96019 0.92789 0.88004 0.91092 0.86368 0.88696 0.88885 0.89137 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.57 37.16 0.36 -0.74 16 2 C 0.08 0.76 3.40 -26.57 -0.09 0.67 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.08 0.92 5.86 -3.53 -0.02 0.90 16 5 N -0.64 -9.13 3.02 -178.00 -0.54 -9.66 16 6 C 0.70 12.96 8.31 -86.92 -0.72 12.24 16 7 O -0.59 -13.06 15.82 5.29 0.08 -12.98 16 8 N -0.74 -13.55 5.47 -65.22 -0.36 -13.90 16 9 C 0.14 3.03 5.62 -4.04 -0.02 3.01 16 10 C 0.01 0.35 5.09 -27.89 -0.14 0.20 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.11 1.33 5.93 -3.53 -0.02 1.31 16 20 C 0.11 1.18 3.13 -26.57 -0.08 1.10 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.15 -1.37 5.71 -90.62 -0.52 -1.89 16 23 C -0.17 -1.39 10.19 -26.73 -0.27 -1.67 16 24 C -0.16 -1.34 9.87 -26.73 -0.26 -1.61 16 25 O -0.37 -4.01 8.39 -35.23 -0.30 -4.31 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.96 5.78 -51.93 -0.30 0.66 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.39 6.26 6.03 -40.82 -0.25 6.01 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.10 1.39 7.06 -51.93 -0.37 1.03 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 0.94 8.12 -51.93 -0.42 0.52 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.98 7.07 -51.93 -0.37 0.61 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -32.05 348.16 -9.52 -41.56 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.16 Total: 2.75 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.21 Total: 0.26 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.16 Total: -48.92 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.21 Total: -17.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.05 -9.52 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.033 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds