Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.51707 * 2 1 4 4 C 1.53307 * 109.50964 * 239.89923 * 2 1 3 5 5 N 1.47147 * 108.38362 * 187.72236 * 4 2 1 6 6 C 1.34777 * 120.98300 * 230.55685 * 5 4 2 7 7 O 1.21585 * 120.00010 * 174.76032 * 6 5 4 8 8 N 1.34773 * 119.99811 * 354.76625 * 6 5 4 9 9 C 1.46503 * 119.99913 * 184.97321 * 8 6 5 10 10 C 1.52997 * 109.47244 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47316 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99958 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47287 * 59.99884 * 15 13 11 17 17 H 1.48502 * 109.47064 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46916 * 299.99677 * 15 13 11 19 19 C 1.47151 * 118.03673 * 50.54141 * 5 4 2 20 20 C 1.53304 * 108.38230 * 309.46193 * 19 5 4 21 21 H 1.09005 * 109.51103 * 292.32751 * 20 19 5 22 22 C 1.53005 * 109.51163 * 172.22817 * 20 19 5 23 23 C 1.53001 * 117.49660 * 180.10003 * 22 20 19 24 24 C 1.52999 * 59.99986 * 107.48797 * 23 22 20 25 25 O 1.42954 * 109.26416 * 52.27531 * 20 19 5 26 26 H 1.08996 * 109.47317 * 180.09710 * 1 2 3 27 27 H 1.08997 * 109.46419 * 300.09694 * 1 2 3 28 28 H 1.08993 * 109.47185 * 60.09574 * 1 2 3 29 29 H 1.09005 * 109.67504 * 68.00302 * 4 2 1 30 30 H 1.08996 * 109.71247 * 307.47019 * 4 2 1 31 31 H 0.97001 * 120.00108 * 4.97606 * 8 6 5 32 32 H 1.08998 * 109.47413 * 300.00089 * 9 8 6 33 33 H 1.09006 * 109.46625 * 59.99942 * 9 8 6 34 34 H 1.08998 * 109.47206 * 300.00482 * 10 9 8 35 35 H 1.09000 * 109.47365 * 60.00140 * 10 9 8 36 36 H 0.97001 * 120.00116 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.68283 * 189.74174 * 19 5 4 38 38 H 1.08997 * 109.71528 * 69.19683 * 19 5 4 39 39 H 1.08998 * 115.56378 * 34.41236 * 22 20 19 40 40 H 1.09001 * 117.49939 * 359.97438 * 23 22 20 41 41 H 1.08996 * 117.49955 * 214.97884 * 23 22 20 42 42 H 1.08997 * 117.50247 * 107.48584 * 24 23 22 43 43 H 1.09003 * 117.50031 * 252.48918 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2502 5 7 3.5013 -0.8747 -1.1347 6 6 4.3187 -0.5011 -2.1391 7 8 5.5246 -0.5436 -1.9892 8 7 3.7995 -0.0805 -3.3095 9 6 4.6847 0.2215 -4.4371 10 6 3.8480 0.6743 -5.6353 11 6 4.7584 0.9843 -6.7954 12 1 5.8271 0.8703 -6.6886 13 6 4.2273 1.4146 -7.9928 14 7 2.9261 1.5539 -8.1227 15 14 5.3559 1.7982 -9.4311 16 1 6.1239 0.5808 -9.7961 17 1 4.5437 2.2378 -10.5940 18 1 6.2971 2.8806 -9.0466 19 6 4.0417 -1.4442 0.1098 20 6 3.4323 -0.6845 1.2937 21 1 3.8040 0.3402 1.2990 22 6 3.8234 -1.3767 2.6010 23 6 3.3067 -0.7666 3.9055 24 6 2.7148 -2.0789 3.3876 25 8 2.0085 -0.6752 1.1656 26 1 -0.3634 -1.0276 0.0017 27 1 -0.3632 0.5153 0.8891 28 1 -0.3633 0.5123 -0.8908 29 1 1.8022 -0.1393 -2.1378 30 1 1.5764 -1.7076 -1.3219 31 1 2.8397 0.0224 -3.4052 32 1 5.3750 1.0163 -4.1544 33 1 5.2491 -0.6716 -4.7052 34 1 3.1580 -0.1208 -5.9178 35 1 3.2832 1.5673 -5.3675 36 1 2.5523 1.8562 -8.9652 37 1 5.1262 -1.3352 0.1228 38 1 3.7779 -2.4997 0.1761 39 1 4.8148 -1.8294 2.6152 40 1 2.6885 0.1282 3.8324 41 1 3.9582 -0.8179 4.7778 42 1 2.9769 -2.9937 3.9192 43 1 1.7067 -2.0479 2.9741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366199626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -71.394245 kcal Electronic energy + Delta-G solvation = -22517.929132 eV Core-core repulsion = 19177.166035 eV Total energy + Delta-G solvation = -3340.763096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72195 -40.05514 -37.72268 -36.72603 -35.78225 -34.84388 -33.52482 -31.67415 -29.83636 -27.48920 -26.76106 -24.82560 -23.27364 -22.91405 -22.58808 -21.37415 -20.92374 -19.29378 -18.51992 -17.75102 -17.26987 -17.02693 -16.60184 -16.51053 -16.26513 -15.71260 -15.45639 -15.31461 -15.06419 -14.32112 -14.27784 -13.98999 -13.60203 -13.32475 -13.14620 -12.95741 -12.92857 -12.57253 -12.53163 -12.29733 -12.26115 -12.17267 -11.87390 -11.68322 -11.51534 -11.36343 -11.28903 -11.07403 -10.84557 -10.60684 -10.18931 -9.48059 -8.24437 -6.34810 1.41231 1.44306 1.47885 1.53464 2.01170 2.40123 2.49796 2.87776 2.93560 3.10418 3.53989 3.72593 3.83486 3.96255 4.04272 4.08681 4.17459 4.31856 4.34532 4.41600 4.48332 4.49715 4.57657 4.64930 4.81877 4.83733 4.86933 4.91619 5.01121 5.05251 5.24173 5.27063 5.29370 5.33506 5.40537 5.47915 5.57007 5.74967 5.82832 6.13881 6.15831 6.77498 6.86917 7.34375 7.44321 8.87341 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.003099 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.040600 B = 9032.112986 C = 9663.252841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.055 0.945 4 C 0.078 3.922 5 N -0.633 5.633 6 C 0.701 3.299 7 O -0.634 6.634 8 N -0.733 5.733 9 C 0.159 3.841 10 C 0.026 3.974 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.105 3.895 20 C 0.116 3.884 21 H 0.053 0.947 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.158 4.158 25 O -0.373 6.373 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.404 0.596 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -5.696 22.365 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.073 0.927 4 C -0.045 4.045 5 N -0.371 5.371 6 C 0.403 3.597 7 O -0.516 6.516 8 N -0.389 5.389 9 C 0.035 3.965 10 C -0.012 4.012 11 C -0.587 4.587 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.018 4.018 20 C 0.058 3.942 21 H 0.071 0.929 22 C -0.182 4.182 23 C -0.205 4.205 24 C -0.194 4.194 25 O -0.292 6.292 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.242 0.758 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.631 -5.774 22.441 23.846 hybrid contribution 0.306 0.507 -1.311 1.438 sum -5.326 -5.266 21.130 22.418 Atomic orbital electron populations 1.21728 0.89961 1.03932 1.03849 1.22534 0.96981 0.94646 0.84064 0.92696 1.22625 0.78933 1.02920 1.00031 1.47354 1.06799 1.66786 1.16156 1.16038 0.84812 0.78038 0.80810 1.90844 1.14600 1.63463 1.82646 1.45395 1.11147 1.71183 1.11169 1.21123 0.92330 0.98545 0.84476 1.19107 0.95072 0.95661 0.91321 1.21424 0.93926 1.45746 0.97565 0.92299 1.25854 0.96657 0.94949 1.01578 1.70042 1.12301 1.47266 1.26897 0.85505 0.78606 0.78955 0.78022 1.19358 1.20513 1.19378 1.22180 1.00050 0.97902 0.81628 1.21774 0.81324 0.97899 0.93251 0.92916 1.22240 1.00255 1.05751 0.89994 1.22981 1.03663 0.97578 0.96297 1.22881 0.98170 0.96308 1.02077 1.87919 1.20436 1.77487 1.43372 0.90909 0.90991 0.89329 0.88785 0.89066 0.75820 0.93802 0.93716 0.97248 0.97310 0.92487 0.89524 0.89829 0.85422 0.89321 0.87337 0.87636 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 71.98 0.69 -1.13 16 2 C 0.08 1.42 3.40 30.70 0.10 1.52 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.08 1.63 5.86 86.36 0.51 2.14 16 5 N -0.63 -17.77 3.02 -835.32 -2.52 -20.29 16 6 C 0.70 25.97 8.31 179.06 1.49 27.45 16 7 O -0.63 -28.41 15.82 -3.98 -0.06 -28.47 16 8 N -0.73 -27.03 5.47 -478.53 -2.62 -29.64 16 9 C 0.16 7.08 5.62 86.38 0.49 7.56 16 10 C 0.03 1.32 5.09 29.85 0.15 1.47 16 11 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.01 0.48 5.46 84.66 0.46 0.94 16 14 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 15 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C 0.11 2.58 5.93 86.36 0.51 3.09 16 20 C 0.12 2.41 3.13 30.70 0.10 2.51 16 21 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 22 C -0.16 -2.69 5.71 -10.79 -0.06 -2.75 16 23 C -0.17 -2.41 10.19 30.59 0.31 -2.10 16 24 C -0.16 -2.29 9.87 30.59 0.30 -1.98 16 25 O -0.37 -7.51 8.39 -148.98 -1.25 -8.76 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.89 5.78 -2.38 -0.01 1.87 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.40 12.79 6.03 -92.71 -0.56 12.23 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.09 2.41 7.06 -2.39 -0.02 2.39 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.13 1.84 8.12 -2.39 -0.02 1.82 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.61 7.07 -2.39 -0.02 1.59 16 Total: -1.00 -68.13 348.16 1.57 -66.56 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.43 Total: 20.55 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.28 Total: 8.20 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.85 Total: -103.68 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.31 Total: -37.23 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.13 1.57 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366199626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.839 kcal (2) G-P(sol) polarization free energy of solvation -68.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds