Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46659 * 2 1 4 4 O 1.42901 * 109.46977 * 120.00318 * 2 1 3 5 5 C 1.52999 * 109.46970 * 240.00252 * 2 1 3 6 6 H 1.08996 * 110.88642 * 303.88208 * 5 2 1 7 7 C 1.55156 * 111.00353 * 180.02562 * 5 2 1 8 8 C 1.54324 * 102.93955 * 206.42414 * 7 5 2 9 9 N 1.47021 * 107.27362 * 22.19280 * 8 7 5 10 10 C 1.34778 * 125.64949 * 181.01865 * 9 8 7 11 11 O 1.21586 * 120.00275 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99917 * 0.02985 * 10 9 8 13 13 C 1.46494 * 119.99935 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47390 * 184.49466 * 13 12 10 15 15 C 1.50706 * 115.55186 * 298.18386 * 14 13 12 16 16 H 1.07995 * 120.00622 * 99.53501 * 15 14 13 17 17 C 1.37876 * 119.99300 * 279.54425 * 15 14 13 18 18 N 1.31510 * 120.00663 * 357.48623 * 17 15 14 19 19 Si 1.86812 * 119.99755 * 177.48895 * 17 15 14 20 20 H 1.48497 * 109.46872 * 59.99690 * 19 17 15 21 21 H 1.48494 * 109.46830 * 299.99755 * 19 17 15 22 22 H 1.48505 * 109.46738 * 179.97438 * 19 17 15 23 23 C 1.53006 * 117.51708 * 83.87692 * 14 13 12 24 24 C 1.52999 * 117.50274 * 152.50526 * 14 13 12 25 25 C 1.47420 * 108.70080 * 1.28746 * 9 8 7 26 26 H 1.09007 * 109.47336 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47045 * 299.99724 * 1 2 3 28 28 H 1.09000 * 109.47380 * 59.99489 * 1 2 3 29 29 H 0.96699 * 113.99951 * 60.00128 * 4 2 1 30 30 H 1.08993 * 110.72041 * 88.05987 * 7 5 2 31 31 H 1.08999 * 110.71901 * 324.78310 * 7 5 2 32 32 H 1.08996 * 109.88427 * 262.77122 * 8 7 5 33 33 H 1.09007 * 109.88234 * 141.60925 * 8 7 5 34 34 H 0.97001 * 119.99704 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47183 * 64.50029 * 13 12 10 36 36 H 1.08998 * 109.47687 * 304.49540 * 13 12 10 37 37 H 0.97006 * 119.99692 * 5.88327 * 18 17 15 38 38 H 1.08997 * 117.49699 * 214.97613 * 23 14 13 39 39 H 1.08996 * 117.49671 * 359.97438 * 23 14 13 40 40 H 1.08999 * 117.49770 * 359.97438 * 24 14 13 41 41 H 1.09001 * 117.49899 * 144.99597 * 24 14 13 42 42 H 1.09004 * 110.37021 * 94.48546 * 25 9 8 43 43 H 1.09004 * 110.36251 * 216.80393 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 1 1.6342 -1.7311 -1.3078 7 6 3.5910 -0.7425 -1.2849 8 6 3.9006 -0.8405 -2.7936 9 7 2.7214 -0.3397 -3.5147 10 6 2.5871 -0.2789 -4.8544 11 8 1.5627 0.1563 -5.3437 12 7 3.5885 -0.7007 -5.6519 13 6 3.4424 -0.6352 -7.1080 14 6 4.6640 -1.2732 -7.7725 15 6 5.9839 -0.6055 -7.4838 16 1 6.6441 -1.0158 -6.7342 17 6 6.3483 0.5294 -8.1768 18 7 5.5671 1.0009 -9.1239 19 14 7.9519 1.3972 -7.7705 20 1 9.0876 0.4650 -7.9859 21 1 7.9324 1.8341 -6.3514 22 1 8.1105 2.5820 -8.6516 23 6 4.6636 -2.7940 -7.9407 24 6 4.4725 -1.8894 -9.1597 25 6 1.7127 0.0911 -2.5297 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.7210 -1.5953 1.2328 30 1 3.9769 -1.6130 -0.7546 31 1 3.9990 0.1775 -0.8665 32 1 4.0889 -1.8788 -3.0667 33 1 4.7699 -0.2284 -3.0342 34 1 4.4060 -1.0476 -5.2616 35 1 3.3626 0.4066 -7.4187 36 1 2.5433 -1.1735 -7.4077 37 1 4.6963 0.6022 -9.2776 38 1 5.6179 -3.3114 -7.8426 39 1 3.7930 -3.3402 -7.5776 40 1 3.4761 -1.8406 -9.5989 41 1 5.3011 -1.8117 -9.8637 42 1 1.8029 1.1601 -2.3371 43 1 0.7100 -0.1481 -2.8843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -68.384934 kcal Electronic energy + Delta-G solvation = -22758.307230 eV Core-core repulsion = 19417.674628 eV Total energy + Delta-G solvation = -3340.632603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11445 -38.54083 -37.11640 -36.31208 -33.43380 -32.17133 -31.91900 -30.47114 -28.29803 -26.25530 -24.88341 -23.72743 -22.38276 -21.34929 -20.85950 -19.66327 -19.40592 -17.90090 -17.03128 -16.62213 -15.96061 -15.56504 -15.30636 -14.53386 -14.48032 -13.91933 -13.78072 -13.68238 -13.35152 -13.13903 -12.89020 -12.69387 -12.55801 -12.36239 -12.29462 -11.73981 -11.62545 -11.44532 -11.07148 -10.97325 -10.81880 -10.80574 -10.48893 -10.25913 -10.15659 -9.81524 -9.55150 -8.73571 -8.65667 -8.52569 -8.30675 -8.03270 -6.38691 -4.16670 2.95941 3.39452 3.40304 3.59397 3.67283 3.89819 4.32370 4.37636 4.45473 4.49419 4.65727 4.92711 4.93045 5.00443 5.13571 5.18310 5.29223 5.30131 5.44529 5.57702 5.69579 5.71648 5.76975 5.79591 5.82926 5.91051 6.06371 6.13669 6.24757 6.37264 6.40914 6.52898 6.67991 6.85423 7.16802 7.18741 7.29097 7.31249 7.49153 8.16075 8.31603 8.53305 8.80879 9.11015 9.59924 10.99623 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.003976 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.032909 B = 7041.276124 C = 7570.205703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.115 3.885 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.137 4.137 6 H 0.086 0.914 7 C -0.115 4.115 8 C 0.098 3.902 9 N -0.642 5.642 10 C 0.716 3.284 11 O -0.602 6.602 12 N -0.715 5.715 13 C 0.177 3.823 14 C 0.005 3.995 15 C -0.575 4.575 16 H 0.052 0.948 17 C 0.030 3.970 18 N -0.900 5.900 19 Si 1.066 2.934 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.282 1.282 23 C -0.193 4.193 24 C -0.172 4.172 25 C 0.136 3.864 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.374 0.626 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.276 0.724 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -4.929 17.483 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.055 3.945 3 H 0.120 0.880 4 O -0.366 6.366 5 C -0.156 4.156 6 H 0.105 0.895 7 C -0.153 4.153 8 C -0.026 4.026 9 N -0.382 5.382 10 C 0.418 3.582 11 O -0.482 6.482 12 N -0.367 5.367 13 C 0.053 3.947 14 C 0.004 3.996 15 C -0.613 4.613 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.894 3.106 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.230 4.230 24 C -0.210 4.210 25 C 0.012 3.988 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.221 0.779 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.410 -2.759 16.601 17.676 hybrid contribution -0.844 -2.029 0.396 2.233 sum -6.253 -4.788 16.996 18.732 Atomic orbital electron populations 1.22545 0.96192 1.02728 1.03094 1.21838 0.92919 0.96481 0.83239 0.88031 1.86602 1.77275 1.29084 1.43591 1.23199 0.96874 1.00480 0.95069 0.89520 1.22550 0.94722 1.03411 0.94616 1.22009 0.89208 0.99454 0.91926 1.47497 1.18351 1.68667 1.03670 1.15550 0.84126 0.79167 0.79337 1.90870 1.29860 1.53970 1.73488 1.45043 1.17680 1.66896 1.07096 1.20862 0.96268 1.00601 0.76942 1.19330 0.94896 0.90206 0.95141 1.21182 1.01723 1.12798 1.25584 0.92979 1.25758 1.04015 0.94937 0.92993 1.70717 1.11033 1.43405 1.28218 0.83590 0.74652 0.76409 0.75939 1.21490 1.21475 1.20752 1.22847 1.00431 0.95020 1.04745 1.22761 1.00326 1.05772 0.92150 1.21944 0.92839 0.97786 0.86212 0.92232 0.91724 0.91089 0.77928 0.89980 0.90304 0.91730 0.91265 0.76680 0.92170 0.94274 0.91236 0.90128 0.91439 0.91325 0.89493 0.91838 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 9.40 37.16 0.35 -0.93 16 2 C 0.11 0.89 3.11 -26.73 -0.08 0.80 16 3 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 4 O -0.56 -4.47 13.04 -35.23 -0.46 -4.92 16 5 C -0.14 -1.21 2.77 -88.35 -0.24 -1.45 16 6 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.12 -1.06 6.14 -24.90 -0.15 -1.21 16 8 C 0.10 1.19 6.15 -3.06 -0.02 1.17 16 9 N -0.64 -9.98 3.32 -176.10 -0.59 -10.57 16 10 C 0.72 14.57 8.49 -86.91 -0.74 13.83 16 11 O -0.60 -14.37 16.60 5.29 0.09 -14.28 16 12 N -0.71 -14.76 5.41 -65.23 -0.35 -15.12 16 13 C 0.18 4.11 5.43 -4.05 -0.02 4.09 16 14 C 0.01 0.12 0.99 -155.66 -0.15 -0.03 16 15 C -0.58 -15.01 8.42 -34.44 -0.29 -15.30 16 16 H 0.05 1.35 7.81 -52.49 -0.41 0.93 16 17 C 0.03 0.81 5.44 -17.82 -0.10 0.71 16 18 N -0.90 -26.10 13.53 55.43 0.75 -25.35 16 19 Si 1.07 24.26 29.90 -169.99 -5.08 19.18 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 C -0.19 -4.04 9.95 -26.73 -0.27 -4.31 16 24 C -0.17 -3.88 8.74 -26.73 -0.23 -4.11 16 25 C 0.14 1.69 5.64 -2.41 -0.01 1.67 16 26 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 29 H 0.37 1.70 9.05 45.56 0.41 2.12 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 7.71 7.20 -40.82 -0.29 7.42 16 35 H 0.06 1.58 7.81 -51.93 -0.41 1.17 16 36 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.28 7.99 6.17 -40.82 -0.25 7.74 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.06 0.77 7.99 -51.93 -0.41 0.35 16 43 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.31 350.94 -8.77 -41.08 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.45 Total: 9.77 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.96 Total: -5.07 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.19 Total: -51.04 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.37 Total: -19.21 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.31 -8.77 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.308 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds