Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 O 1.42897 * 109.47306 * 120.00749 * 2 1 3 5 5 C 1.53009 * 109.46877 * 240.00618 * 2 1 3 6 6 H 1.08998 * 110.88760 * 62.42304 * 5 2 1 7 7 C 1.55149 * 111.03650 * 186.33433 * 5 2 1 8 8 C 1.54326 * 102.94487 * 153.58991 * 7 5 2 9 9 N 1.47294 * 107.30111 * 337.81386 * 8 7 5 10 10 C 1.34775 * 125.78840 * 178.92603 * 9 8 7 11 11 O 1.21591 * 119.99619 * 175.07524 * 10 9 8 12 12 N 1.34772 * 120.00413 * 355.06899 * 10 9 8 13 13 C 1.46499 * 120.00453 * 184.93416 * 12 10 9 14 14 C 1.53000 * 109.47493 * 185.00937 * 13 12 10 15 15 C 1.50701 * 115.54662 * 275.60957 * 14 13 12 16 16 H 1.08002 * 119.99633 * 114.77261 * 15 14 13 17 17 C 1.37878 * 120.00417 * 294.77331 * 15 14 13 18 18 N 1.31514 * 119.99430 * 352.21577 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 172.22043 * 17 15 14 20 20 H 1.48498 * 109.47108 * 59.99905 * 19 17 15 21 21 H 1.48502 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47034 * 299.99446 * 19 17 15 23 23 C 1.52994 * 117.50038 * 129.90666 * 14 13 12 24 24 C 1.52994 * 117.50092 * 61.27949 * 14 13 12 25 25 C 1.47421 * 108.55891 * 358.92509 * 9 8 7 26 26 H 1.08994 * 109.47369 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46910 * 299.99807 * 1 2 3 28 28 H 1.08997 * 109.47161 * 59.99016 * 1 2 3 29 29 H 0.96697 * 114.00286 * 59.99354 * 4 2 1 30 30 H 1.09005 * 110.71880 * 271.95409 * 7 5 2 31 31 H 1.08997 * 110.72437 * 35.04723 * 7 5 2 32 32 H 1.09001 * 109.88066 * 97.22054 * 8 7 5 33 33 H 1.08992 * 109.88423 * 218.23480 * 8 7 5 34 34 H 0.96999 * 119.99746 * 4.94063 * 12 10 9 35 35 H 1.08997 * 109.47176 * 305.01186 * 13 12 10 36 36 H 1.09004 * 109.46781 * 65.00496 * 13 12 10 37 37 H 0.97006 * 119.99873 * 185.00403 * 18 17 15 38 38 H 1.09000 * 117.49637 * 359.97438 * 23 14 13 39 39 H 1.08997 * 117.49940 * 145.02199 * 23 14 13 40 40 H 1.09002 * 117.50044 * 214.98203 * 24 14 13 41 41 H 1.09002 * 117.49582 * 359.97438 * 24 14 13 42 42 H 1.09000 * 110.36613 * 265.25812 * 25 9 8 43 43 H 1.09001 * 110.36708 * 143.04866 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0400 -0.7212 -1.2494 6 1 1.7250 -0.2011 -2.1541 7 6 3.5825 -0.8822 -1.2089 8 6 3.8226 -2.1327 -2.0808 9 7 2.5653 -2.8998 -2.1021 10 6 2.3553 -4.0502 -2.7720 11 8 1.3019 -4.6441 -2.6448 12 7 3.3126 -4.5424 -3.5830 13 6 3.0452 -5.7329 -4.3937 14 6 4.3239 -6.1522 -5.1216 15 6 4.5948 -5.4401 -6.4218 16 1 5.4555 -4.7942 -6.5146 17 6 3.7441 -5.6131 -7.4930 18 7 2.7867 -6.5128 -7.4336 19 14 3.9514 -4.5696 -9.0284 20 1 5.3019 -4.7967 -9.6026 21 1 2.9194 -4.9479 -10.0270 22 1 3.7979 -3.1351 -8.6765 23 6 4.7480 -7.6185 -5.0170 24 6 5.5300 -6.5403 -4.2641 25 6 1.5734 -2.1982 -1.2671 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 1.7210 -1.5953 1.2328 30 1 4.0728 -0.0103 -1.6418 31 1 3.9262 -1.0488 -0.1880 32 1 4.0904 -1.8324 -3.0938 33 1 4.6208 -2.7372 -1.6502 34 1 4.1788 -4.1083 -3.6298 35 1 2.7119 -6.5451 -3.7476 36 1 2.2682 -5.5079 -5.1244 37 1 2.2345 -6.6856 -8.2122 38 1 4.1161 -8.2844 -4.4293 39 1 5.2230 -8.0684 -5.8888 40 1 6.5196 -6.2810 -4.6405 41 1 5.4126 -6.4966 -3.1813 42 1 1.5707 -2.6074 -0.2569 43 1 0.5807 -2.2772 -1.7103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -60.959667 kcal Electronic energy + Delta-G solvation = -22846.147363 eV Core-core repulsion = 19505.836744 eV Total energy + Delta-G solvation = -3340.310619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16807 -38.57582 -36.83551 -36.04553 -33.26294 -32.10371 -32.00363 -30.41618 -28.36137 -26.30837 -25.27731 -23.94343 -22.30008 -21.24554 -20.38903 -19.38791 -19.31883 -17.87861 -17.09090 -16.36304 -15.89660 -15.39072 -15.23286 -14.70393 -14.52078 -14.08654 -13.86449 -13.76873 -13.25140 -12.97454 -12.90020 -12.63282 -12.48092 -12.20309 -11.87007 -11.67703 -11.51253 -11.39922 -10.97769 -10.93335 -10.91169 -10.74742 -10.54267 -10.30477 -10.24200 -9.75628 -9.46941 -9.04907 -8.59618 -8.52907 -8.22039 -7.94592 -6.08252 -4.15081 2.99803 3.26764 3.33100 3.34097 3.72001 4.05428 4.21670 4.34978 4.39181 4.62811 4.66086 4.90678 4.96865 5.08101 5.15059 5.16560 5.29853 5.38643 5.49394 5.59105 5.67321 5.73957 5.76798 5.84617 5.92146 6.00820 6.10226 6.31226 6.40976 6.48524 6.62889 6.68291 6.90489 7.05289 7.32195 7.35556 7.41317 7.51677 7.57635 7.83902 8.34674 8.57495 8.84164 9.17219 9.49658 10.99502 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.004016 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.309134 B = 6971.228603 C = 7365.599271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.116 3.884 3 H 0.102 0.898 4 O -0.562 6.562 5 C -0.139 4.139 6 H 0.093 0.907 7 C -0.122 4.122 8 C 0.100 3.900 9 N -0.642 5.642 10 C 0.716 3.284 11 O -0.599 6.599 12 N -0.723 5.723 13 C 0.181 3.819 14 C 0.035 3.965 15 C -0.501 4.501 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.164 4.164 24 C -0.208 4.208 25 C 0.133 3.867 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.375 0.625 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 12.430 13.061 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.056 3.944 3 H 0.120 0.880 4 O -0.369 6.369 5 C -0.158 4.158 6 H 0.112 0.888 7 C -0.160 4.160 8 C -0.024 4.024 9 N -0.383 5.383 10 C 0.418 3.582 11 O -0.478 6.478 12 N -0.375 5.375 13 C 0.058 3.942 14 C 0.034 3.966 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.202 4.202 24 C -0.245 4.245 25 C 0.009 3.991 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.224 0.776 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.879 12.395 13.066 18.031 hybrid contribution 0.255 0.107 -1.204 1.236 sum -0.624 12.503 11.861 17.245 Atomic orbital electron populations 1.22541 0.96201 1.03099 1.02824 1.21744 0.92902 0.96238 0.83495 0.87984 1.86564 1.77200 1.29427 1.43715 1.23155 0.96593 0.96177 0.99892 0.88841 1.22609 0.95056 0.97198 1.01091 1.22011 0.87254 0.92736 1.00378 1.47574 1.13779 1.24260 1.52661 1.15577 0.84337 0.79454 0.78842 1.90880 1.27064 1.60220 1.69649 1.45316 1.15237 1.32353 1.44591 1.20909 0.98753 0.83481 0.91084 1.19063 0.89170 0.94067 0.94264 1.20385 1.10320 1.28191 0.94918 0.92205 1.24983 0.94699 0.94991 0.98452 1.69958 1.19812 1.31300 1.29900 0.86676 0.77788 0.80995 0.82644 1.20258 1.21219 1.20205 1.22708 1.03443 0.93262 1.00816 1.22873 0.97388 1.08121 0.96151 1.21899 0.93157 0.89627 0.94377 0.91842 0.91755 0.91362 0.77588 0.90205 0.89549 0.91498 0.91684 0.77294 0.94265 0.90454 0.92689 0.91612 0.89962 0.90424 0.91504 0.92535 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.33 37.16 0.35 -0.99 16 2 C 0.12 0.89 3.54 -26.73 -0.09 0.80 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 4 O -0.56 -4.98 12.27 -35.23 -0.43 -5.41 16 5 C -0.14 -1.25 2.99 -88.47 -0.26 -1.52 16 6 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -1.09 6.36 -24.90 -0.16 -1.25 16 8 C 0.10 1.17 6.20 -2.91 -0.02 1.15 16 9 N -0.64 -9.78 3.34 -176.02 -0.59 -10.37 16 10 C 0.72 14.45 8.48 -86.92 -0.74 13.71 16 11 O -0.60 -14.37 16.62 5.29 0.09 -14.29 16 12 N -0.72 -14.70 5.42 -65.23 -0.35 -15.05 16 13 C 0.18 4.30 5.53 -4.04 -0.02 4.28 16 14 C 0.04 0.84 1.32 -155.67 -0.21 0.63 16 15 C -0.50 -13.07 8.82 -34.44 -0.30 -13.37 16 16 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 17 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 18 N -0.87 -24.47 12.60 55.43 0.70 -23.77 16 19 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.16 -3.73 9.88 -26.73 -0.26 -4.00 16 24 C -0.21 -4.30 9.78 -26.73 -0.26 -4.56 16 25 C 0.13 1.61 5.26 -2.53 -0.01 1.60 16 26 H 0.06 0.47 7.27 -51.93 -0.38 0.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.38 2.66 7.08 45.56 0.32 2.98 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.78 7.18 -51.93 -0.37 0.40 16 32 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 7.23 7.40 -40.82 -0.30 6.93 16 35 H 0.04 0.95 7.87 -51.93 -0.41 0.55 16 36 H 0.08 2.12 7.26 -51.93 -0.38 1.74 16 37 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 38 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 39 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 0.62 6.17 -51.93 -0.32 0.30 16 43 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -31.29 347.61 -8.90 -40.19 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.44 Total: 9.45 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.09 Total: -1.66 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.24 Total: -49.20 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.34 Total: -19.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.29 -8.90 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.771 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds