Wall clock time and date at job start Tue Mar 31 2020 05:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08989 * 109.47034 * 2 1 4 4 O 1.42901 * 109.46713 * 240.00171 * 2 1 3 5 5 C 1.53001 * 109.47044 * 120.00160 * 2 1 3 6 6 H 1.08998 * 110.88392 * 62.42604 * 5 2 1 7 7 C 1.55151 * 111.03619 * 186.32886 * 5 2 1 8 8 C 1.54334 * 103.02099 * 153.39371 * 7 5 2 9 9 N 1.47017 * 107.26568 * 338.14389 * 8 7 5 10 10 C 1.34776 * 125.64747 * 178.85088 * 9 8 7 11 11 O 1.21584 * 119.99958 * 184.67431 * 10 9 8 12 12 N 1.34771 * 120.00184 * 4.67143 * 10 9 8 13 13 C 1.46504 * 120.00257 * 184.70314 * 12 10 9 14 14 C 1.52995 * 109.47150 * 175.40655 * 13 12 10 15 15 C 1.50700 * 115.55349 * 281.29167 * 14 13 12 16 16 H 1.07994 * 120.00568 * 144.14434 * 15 14 13 17 17 C 1.37881 * 119.99626 * 324.15611 * 15 14 13 18 18 N 1.31509 * 120.00092 * 339.01740 * 17 15 14 19 19 Si 1.86803 * 119.99946 * 159.02639 * 17 15 14 20 20 H 1.48498 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47095 * 119.99447 * 19 17 15 22 22 H 1.48503 * 109.46728 * 239.99324 * 19 17 15 23 23 C 1.53005 * 117.49878 * 135.58418 * 14 13 12 24 24 C 1.53005 * 60.00080 * 252.51016 * 23 14 13 25 25 C 1.47425 * 108.70362 * 358.57983 * 9 8 7 26 26 H 1.09000 * 109.46430 * 299.99947 * 1 2 3 27 27 H 1.08995 * 109.46890 * 60.00009 * 1 2 3 28 28 H 1.08998 * 109.47003 * 179.97438 * 1 2 3 29 29 H 0.96706 * 113.99956 * 300.00160 * 4 2 1 30 30 H 1.09007 * 110.72000 * 271.95504 * 7 5 2 31 31 H 1.09004 * 110.72112 * 35.04764 * 7 5 2 32 32 H 1.08996 * 109.99186 * 218.66164 * 8 7 5 33 33 H 1.09005 * 109.77576 * 97.49859 * 8 7 5 34 34 H 0.97004 * 119.99732 * 4.97753 * 12 10 9 35 35 H 1.09001 * 109.46457 * 295.40667 * 13 12 10 36 36 H 1.08994 * 109.46933 * 55.40200 * 13 12 10 37 37 H 0.96999 * 120.00599 * 185.01921 * 18 17 15 38 38 H 1.08992 * 117.49618 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49538 * 145.01775 * 23 14 13 40 40 H 1.09004 * 117.49629 * 252.51414 * 24 23 14 41 41 H 1.08996 * 117.51676 * 107.47957 * 24 23 14 42 42 H 1.08999 * 110.36767 * 143.19448 * 25 9 8 43 43 H 1.08999 * 110.37273 * 265.41055 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.7252 -1.7648 1.2512 7 6 3.5827 -0.6057 1.3683 8 6 3.8245 -0.7301 2.8875 9 7 2.5677 -0.3706 3.5603 10 6 2.3604 -0.3752 4.8920 11 8 1.2529 -0.1407 5.3357 12 7 3.3806 -0.6398 5.7319 13 6 3.1349 -0.7467 7.1722 14 6 4.4258 -1.1625 7.8803 15 6 4.7709 -2.6270 7.7957 16 1 5.8028 -2.9349 7.7145 17 6 3.7690 -3.5739 7.8217 18 7 2.5908 -3.2710 8.3212 19 14 4.0854 -5.2871 7.1476 20 1 5.4806 -5.3720 6.6463 21 1 3.8847 -6.2882 8.2259 22 1 3.1421 -5.5629 6.0343 23 6 4.7954 -0.4224 9.1675 24 6 5.5841 -0.1627 7.8823 25 6 1.5737 0.0020 2.5373 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7209 -1.5952 -1.2330 30 1 4.0729 -1.4168 0.8297 31 1 3.9264 0.3617 1.0020 32 1 4.6179 -0.0492 3.1956 33 1 4.0970 -1.7562 3.1348 34 1 4.2784 -0.7556 5.3831 35 1 2.8040 0.2181 7.5568 36 1 2.3633 -1.4945 7.3546 37 1 1.9094 -3.9562 8.4065 38 1 4.1187 0.3604 9.5099 39 1 5.2881 -0.9949 9.9534 40 1 6.5956 -0.5644 7.8228 41 1 5.4265 0.7910 7.3788 42 1 0.5818 -0.3438 2.8284 43 1 1.5695 1.0816 2.3877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:34 Heat of formation + Delta-G solvation = -58.212687 kcal Electronic energy + Delta-G solvation = -22946.267470 eV Core-core repulsion = 19606.075969 eV Total energy + Delta-G solvation = -3340.191501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99920 -38.41653 -36.90080 -36.16575 -33.18877 -32.26119 -32.03913 -30.38350 -28.15890 -26.15830 -25.29904 -23.63989 -22.27387 -21.25220 -20.77359 -19.29065 -19.25578 -17.83827 -16.99326 -16.30978 -15.75473 -15.46044 -15.13008 -14.73337 -14.42138 -14.07597 -13.85589 -13.58129 -13.23168 -13.00746 -12.86187 -12.60829 -12.39967 -12.31042 -11.74691 -11.60267 -11.48661 -11.42456 -10.99236 -10.97715 -10.77070 -10.75054 -10.50074 -10.31326 -10.18754 -9.69332 -9.32792 -9.26111 -8.79940 -8.45038 -8.19064 -7.77066 -6.14029 -4.12370 3.09922 3.21268 3.31900 3.34331 3.84444 3.96321 4.31133 4.39821 4.44707 4.58600 4.73909 4.94421 4.98776 5.03632 5.08575 5.25181 5.36975 5.49856 5.50808 5.65025 5.75134 5.78210 5.82569 5.86561 5.98240 6.00979 6.12822 6.31382 6.50243 6.54670 6.61458 6.68442 6.93605 7.03421 7.28584 7.35144 7.51368 7.54985 7.69448 7.97674 8.35264 8.67349 8.83002 9.29162 9.44522 10.88127 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.004492 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.317113 B = 6231.773465 C = 6765.471675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.116 3.884 3 H 0.101 0.899 4 O -0.562 6.562 5 C -0.137 4.137 6 H 0.087 0.913 7 C -0.116 4.116 8 C 0.099 3.901 9 N -0.644 5.644 10 C 0.717 3.283 11 O -0.598 6.598 12 N -0.719 5.719 13 C 0.161 3.839 14 C 0.040 3.960 15 C -0.500 4.500 16 H 0.063 0.937 17 C 0.077 3.923 18 N -0.863 5.863 19 Si 0.885 3.115 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.192 4.192 24 C -0.211 4.211 25 C 0.136 3.864 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.375 0.625 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.391 0.609 35 H 0.028 0.972 36 H 0.118 0.882 37 H 0.265 0.735 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 4.832 -15.916 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.056 3.944 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.156 4.156 6 H 0.105 0.895 7 C -0.154 4.154 8 C -0.025 4.025 9 N -0.385 5.385 10 C 0.419 3.581 11 O -0.477 6.477 12 N -0.371 5.371 13 C 0.039 3.961 14 C 0.040 3.960 15 C -0.537 4.537 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.498 5.498 19 Si 0.713 3.287 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.231 4.231 24 C -0.249 4.249 25 C 0.012 3.988 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.046 0.954 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.964 5.493 -15.553 16.523 hybrid contribution 0.392 -1.505 -0.169 1.565 sum -0.573 3.988 -15.722 16.230 Atomic orbital electron populations 1.22555 0.96202 1.02854 1.03039 1.21830 0.92932 0.96348 0.83244 0.88130 1.86584 1.77327 1.29173 1.43629 1.23155 0.96558 1.00948 0.94979 0.89451 1.22564 0.95107 1.03104 0.94605 1.21976 0.87343 1.00767 0.92388 1.47544 1.13631 1.73286 1.04020 1.15537 0.84954 0.78567 0.79088 1.90868 1.23465 1.57865 1.75531 1.45232 1.08990 1.74659 1.08180 1.21164 0.99905 0.99798 0.75265 1.19163 0.90036 0.92184 0.94662 1.20462 0.92996 0.88280 1.51961 0.91883 1.24953 0.94924 0.98745 0.94124 1.69859 1.05479 1.33829 1.40658 0.86648 0.78522 0.84245 0.79312 1.19555 1.20984 1.20813 1.22935 1.04057 1.03729 0.92376 1.22877 0.97455 1.00744 1.03775 1.21879 0.93193 0.98285 0.85433 0.91023 0.91796 0.92151 0.77825 0.89999 0.90550 0.91765 0.91442 0.77577 0.95359 0.86457 0.92502 0.91539 0.90128 0.90565 0.91417 0.90436 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 9.33 37.16 0.35 -1.08 16 2 C 0.12 0.96 3.11 -26.72 -0.08 0.88 16 3 H 0.10 0.84 8.11 -51.94 -0.42 0.42 16 4 O -0.56 -4.82 13.19 -35.23 -0.46 -5.29 16 5 C -0.14 -1.34 2.79 -88.47 -0.25 -1.59 16 6 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 7 C -0.12 -1.13 6.28 -24.89 -0.16 -1.29 16 8 C 0.10 1.26 6.20 -3.06 -0.02 1.24 16 9 N -0.64 -10.51 3.33 -176.24 -0.59 -11.10 16 10 C 0.72 15.26 8.48 -86.92 -0.74 14.52 16 11 O -0.60 -15.01 16.58 5.29 0.09 -14.93 16 12 N -0.72 -15.34 5.48 -65.23 -0.36 -15.69 16 13 C 0.16 3.93 5.31 -4.04 -0.02 3.91 16 14 C 0.04 0.97 1.73 -155.66 -0.27 0.70 16 15 C -0.50 -13.08 8.98 -34.44 -0.31 -13.39 16 16 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 17 C 0.08 2.06 5.06 -17.82 -0.09 1.96 16 18 N -0.86 -24.06 11.08 55.43 0.61 -23.45 16 19 Si 0.89 20.51 29.59 -169.99 -5.03 15.48 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.19 -4.31 9.88 -26.73 -0.26 -4.58 16 24 C -0.21 -4.38 9.91 -26.72 -0.26 -4.64 16 25 C 0.14 1.78 5.36 -2.53 -0.01 1.77 16 26 H 0.07 0.57 7.27 -51.93 -0.38 0.19 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 2.03 9.05 45.56 0.41 2.44 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 32 H 0.06 0.77 8.09 -51.93 -0.42 0.34 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.39 7.55 7.44 -40.82 -0.30 7.25 16 35 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 36 H 0.12 3.30 5.41 -51.93 -0.28 3.02 16 37 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 38 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 39 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 43 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -31.55 349.71 -8.99 -40.54 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.40 Total: 10.74 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.13 Total: -1.58 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.33 Total: -50.24 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.38 Total: -20.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.55 -8.99 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.673 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds