Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46848 * 2 1 4 4 C 1.34779 * 119.99923 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99639 * 179.97438 * 4 3 2 7 7 C 1.53010 * 109.47050 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47280 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 H 1.08998 * 109.46807 * 60.00485 * 1 2 3 25 25 H 1.09005 * 109.46585 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99760 * 1 2 3 27 27 H 1.08991 * 109.46978 * 239.99798 * 2 1 3 28 28 H 1.08998 * 109.46807 * 119.99515 * 2 1 3 29 29 H 0.97003 * 120.00568 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47533 * 60.00122 * 6 4 3 31 31 H 1.08995 * 109.47724 * 299.99461 * 6 4 3 32 32 H 1.09001 * 109.46476 * 59.99936 * 7 6 4 33 33 H 1.08995 * 109.46794 * 300.00492 * 7 6 4 34 34 H 1.09003 * 109.46827 * 60.00578 * 8 7 6 35 35 H 1.09000 * 109.46857 * 300.00287 * 8 7 6 36 36 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 38 38 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 39 39 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 40 40 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 41 41 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 42 42 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 43 43 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3757 3.0485 -0.0010 8 6 5.8856 4.4910 -0.0022 9 6 7.3926 4.4910 -0.0027 10 8 7.9991 3.4407 -0.0017 11 7 8.0665 5.6583 -0.0033 12 6 9.5314 5.6583 -0.0044 13 6 10.0415 7.0958 0.1158 14 6 9.7192 7.9990 -1.0468 15 1 8.8470 8.6349 -1.0109 16 6 10.5411 8.0178 -2.1536 17 7 11.6535 7.3164 -2.1586 18 14 10.0746 9.0397 -3.6461 19 1 10.6433 10.4046 -3.5089 20 1 10.6141 8.3996 -4.8726 21 1 8.5954 9.1272 -3.7433 22 6 10.0664 7.7222 1.5114 23 6 11.3759 7.3145 0.8316 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3880 2.1186 -0.0004 30 1 3.4826 3.5625 0.8888 31 1 3.4821 3.5620 -0.8911 32 1 5.7390 2.5343 -0.8907 33 1 5.7389 2.5350 0.8892 34 1 5.5222 5.0056 0.8874 35 1 5.5222 5.0040 -0.8927 36 1 7.5813 6.4983 -0.0038 37 1 9.8941 5.2206 -0.9344 38 1 9.8954 5.0719 0.8394 39 1 12.2674 7.3858 -2.9066 40 1 9.8499 8.7877 1.5888 41 1 9.7199 7.1102 2.3440 42 1 11.8902 6.4343 1.2173 43 1 12.0210 8.1114 0.4614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -77.448318 kcal Electronic energy + Delta-G solvation = -21446.854181 eV Core-core repulsion = 18105.828560 eV Total energy + Delta-G solvation = -3341.025621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91952 -39.01263 -36.70557 -35.62115 -34.12714 -33.22168 -31.95935 -31.08362 -28.67017 -26.18240 -25.13806 -23.49315 -22.00302 -21.13332 -20.45413 -19.66587 -19.19643 -17.30596 -16.52926 -16.27419 -16.20947 -15.82797 -15.42099 -14.85483 -14.69958 -14.47695 -13.97103 -13.69915 -13.37494 -13.09037 -12.94262 -12.57885 -12.23498 -12.22232 -11.91452 -11.81777 -11.61122 -11.47308 -11.35765 -11.00220 -10.93949 -10.68921 -10.53694 -10.23033 -9.99718 -9.58182 -9.34139 -9.21099 -9.03782 -8.49119 -8.23719 -8.05444 -6.07378 -4.17405 2.51293 2.93699 3.24756 3.27774 3.33154 3.34003 3.92978 4.34597 4.49194 4.67737 4.68818 4.90481 4.95545 4.97751 5.18140 5.20809 5.35527 5.42036 5.43765 5.48232 5.52095 5.60038 5.66953 5.83894 6.06336 6.15666 6.21343 6.35489 6.48680 6.50493 6.59187 6.71346 6.90883 7.13253 7.24243 7.32837 7.41545 7.54415 7.80770 8.06280 8.33537 8.35579 8.83638 8.95027 9.49611 10.99788 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025519 B = 0.002733 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.971129 B =10242.488166 C =10802.585062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.738 5.738 4 C 0.510 3.490 5 O -0.533 6.533 6 C -0.140 4.140 7 C -0.088 4.088 8 C -0.141 4.141 9 C 0.500 3.500 10 O -0.556 6.556 11 N -0.706 5.706 12 C 0.162 3.838 13 C 0.024 3.976 14 C -0.500 4.500 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.143 4.143 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.400 0.600 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 -6.461 4.668 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.392 5.392 4 C 0.296 3.704 5 O -0.408 6.408 6 C -0.180 4.180 7 C -0.126 4.126 8 C -0.181 4.181 9 C 0.286 3.714 10 O -0.435 6.435 11 N -0.355 5.355 12 C 0.039 3.961 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.510 5.510 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.234 0.766 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.048 -8.000 4.515 22.052 hybrid contribution -0.674 1.407 -0.890 1.796 sum -20.721 -6.593 3.625 22.045 Atomic orbital electron populations 1.22005 0.94515 1.03212 1.02474 1.21281 0.94117 0.83333 1.02430 1.46128 1.07394 1.08775 1.76935 1.20875 0.81868 0.92129 0.75486 1.90746 1.55181 1.46636 1.48275 1.21724 0.98622 0.93325 1.04373 1.21057 0.91213 0.95258 1.05115 1.21661 0.93491 0.98911 1.04036 1.20532 0.89735 0.84180 0.76977 1.90680 1.70527 1.31505 1.50769 1.46010 1.08660 1.07831 1.72952 1.20978 0.77567 0.97341 1.00190 1.19055 0.97269 0.91468 0.89912 1.20340 1.10993 1.23222 0.99168 0.92212 1.25004 0.95023 0.94980 0.98192 1.69993 1.09891 1.39556 1.31582 0.86617 0.78839 0.80064 0.82629 1.20720 1.21186 1.19801 1.23011 1.04814 0.99870 0.97121 1.22466 0.90829 1.01455 1.03366 0.91973 0.90850 0.91992 0.91575 0.91586 0.76631 0.88814 0.88751 0.90439 0.90519 0.89294 0.89099 0.76586 0.91556 0.94264 0.92862 0.90424 0.91747 0.91832 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.03 37.16 0.37 -0.32 16 2 C 0.11 0.82 6.39 -4.04 -0.03 0.80 16 3 N -0.74 -5.65 5.56 -60.30 -0.33 -5.99 16 4 C 0.51 5.71 7.83 -10.99 -0.09 5.63 16 5 O -0.53 -8.65 15.98 5.56 0.09 -8.56 16 6 C -0.14 -1.24 5.70 -27.88 -0.16 -1.40 16 7 C -0.09 -1.16 3.79 -26.73 -0.10 -1.26 16 8 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 9 C 0.50 9.24 7.83 -10.98 -0.09 9.15 16 10 O -0.56 -12.66 15.98 5.55 0.09 -12.58 16 11 N -0.71 -13.56 5.48 -60.29 -0.33 -13.89 16 12 C 0.16 3.73 5.50 -4.04 -0.02 3.70 16 13 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 14 C -0.50 -12.78 8.59 -34.44 -0.30 -13.07 16 15 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 16 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 17 N -0.87 -24.36 12.65 55.43 0.70 -23.66 16 18 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 23 C -0.14 -3.31 9.14 -26.70 -0.24 -3.56 16 24 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.21 8.06 -51.93 -0.42 0.80 16 33 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 6.89 8.33 -40.82 -0.34 6.55 16 37 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -33.55 365.01 -8.11 -41.66 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.41 Total: 6.86 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.40 Total: -4.79 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.04 Total: -43.54 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.18 Total: -21.14 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.55 -8.11 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.789 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds