Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46848 * 2 1 4 4 C 1.34779 * 119.99923 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99639 * 179.97438 * 4 3 2 7 7 C 1.53010 * 109.47050 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47280 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 H 1.08998 * 109.46807 * 60.00485 * 1 2 3 25 25 H 1.09005 * 109.46585 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99760 * 1 2 3 27 27 H 1.08991 * 109.46978 * 239.99798 * 2 1 3 28 28 H 1.08998 * 109.46807 * 119.99515 * 2 1 3 29 29 H 0.97003 * 120.00568 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47533 * 60.00122 * 6 4 3 31 31 H 1.08995 * 109.47724 * 299.99461 * 6 4 3 32 32 H 1.09001 * 109.46476 * 59.99936 * 7 6 4 33 33 H 1.08995 * 109.46794 * 300.00492 * 7 6 4 34 34 H 1.09003 * 109.46827 * 60.00578 * 8 7 6 35 35 H 1.09000 * 109.46857 * 300.00287 * 8 7 6 36 36 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 38 38 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 39 39 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 40 40 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 41 41 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 42 42 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 43 43 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3757 3.0485 -0.0010 8 6 5.8856 4.4910 -0.0022 9 6 7.3926 4.4910 -0.0027 10 8 7.9991 3.4407 -0.0017 11 7 8.0665 5.6583 -0.0033 12 6 9.5314 5.6583 -0.0044 13 6 10.0415 7.0958 0.1158 14 6 9.7192 7.9990 -1.0468 15 1 8.8470 8.6349 -1.0109 16 6 10.5411 8.0178 -2.1536 17 7 11.6535 7.3164 -2.1586 18 14 10.0746 9.0397 -3.6461 19 1 10.6433 10.4046 -3.5089 20 1 10.6141 8.3996 -4.8726 21 1 8.5954 9.1272 -3.7433 22 6 10.0664 7.7222 1.5114 23 6 11.3759 7.3145 0.8316 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3880 2.1186 -0.0004 30 1 3.4826 3.5625 0.8888 31 1 3.4821 3.5620 -0.8911 32 1 5.7390 2.5343 -0.8907 33 1 5.7389 2.5350 0.8892 34 1 5.5222 5.0056 0.8874 35 1 5.5222 5.0040 -0.8927 36 1 7.5813 6.4983 -0.0038 37 1 9.8941 5.2206 -0.9344 38 1 9.8954 5.0719 0.8394 39 1 12.2674 7.3858 -2.9066 40 1 9.8499 8.7877 1.5888 41 1 9.7199 7.1102 2.3440 42 1 11.8902 6.4343 1.2173 43 1 12.0210 8.1114 0.4614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -101.777755 kcal Electronic energy + Delta-G solvation = -21447.909185 eV Core-core repulsion = 18105.828560 eV Total energy + Delta-G solvation = -3342.080624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88701 -40.45974 -38.48665 -36.35939 -35.17790 -34.90174 -33.94200 -31.75206 -29.70916 -27.90094 -26.89982 -24.27852 -23.02196 -22.78942 -21.35377 -21.28416 -20.83189 -18.51201 -17.91727 -17.55890 -17.15992 -16.82521 -16.68216 -16.44890 -16.35734 -15.65699 -15.34483 -14.90926 -14.61230 -14.42649 -14.18508 -13.66080 -13.54345 -13.41946 -12.94085 -12.82637 -12.81144 -12.71493 -12.68178 -12.38309 -12.34687 -12.33891 -12.01851 -11.67995 -11.40174 -10.98824 -10.94129 -10.76621 -10.42939 -10.08266 -10.01824 -9.80198 -8.08110 -6.22792 1.43607 1.46272 1.54521 1.68013 1.81799 2.21416 2.42881 2.54542 3.20014 3.51177 3.76513 3.95757 4.11575 4.12751 4.16698 4.21965 4.26244 4.52069 4.55013 4.64218 4.66906 4.68613 4.74142 4.75492 4.81534 4.98094 5.00941 5.05770 5.08453 5.21420 5.26906 5.28902 5.41142 5.53251 5.56938 5.63500 5.73597 5.79597 6.37418 6.60934 6.82915 6.88067 7.32682 7.46713 7.48849 8.99018 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025519 B = 0.002733 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.971129 B =10242.488166 C =10802.585062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.720 5.720 4 C 0.501 3.499 5 O -0.597 6.597 6 C -0.128 4.128 7 C -0.085 4.085 8 C -0.124 4.124 9 C 0.492 3.508 10 O -0.608 6.608 11 N -0.700 5.700 12 C 0.177 3.823 13 C 0.003 3.997 14 C -0.501 4.501 15 H 0.069 0.931 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.258 1.258 22 C -0.174 4.174 23 C -0.159 4.159 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.419 0.581 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.258 0.742 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.985 -4.355 5.209 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.374 5.374 4 C 0.289 3.711 5 O -0.477 6.477 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.164 4.164 9 C 0.281 3.719 10 O -0.490 6.490 11 N -0.349 5.349 12 C 0.052 3.948 13 C 0.002 3.998 14 C -0.539 4.539 15 H 0.087 0.913 16 C -0.181 4.181 17 N -0.549 5.549 18 Si 0.778 3.222 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.182 1.182 22 C -0.211 4.211 23 C -0.197 4.197 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.257 0.743 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.250 0.750 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.903 -5.833 5.069 25.121 hybrid contribution 0.489 0.700 -1.021 1.331 sum -23.413 -5.133 4.048 24.309 Atomic orbital electron populations 1.21942 0.91577 1.04090 1.03498 1.21347 0.96425 0.82979 1.00965 1.46013 1.06691 1.09677 1.74985 1.21416 0.82467 0.92616 0.74555 1.90730 1.56942 1.48591 1.51485 1.21689 0.95010 0.92224 1.07769 1.20938 0.94562 0.95000 1.01921 1.21689 0.88188 0.99055 1.07450 1.21694 0.92338 0.82835 0.75046 1.90666 1.72211 1.33324 1.52795 1.45896 1.07041 1.08974 1.73034 1.20522 0.80071 0.96627 0.97533 1.19092 0.97854 0.91614 0.91235 1.20688 1.10784 1.22849 0.99552 0.91285 1.25784 0.95063 0.96316 1.00974 1.70135 1.11083 1.41441 1.32246 0.85638 0.79177 0.78452 0.78902 1.20290 1.22187 1.18236 1.22995 1.01620 1.00577 0.95882 1.22389 0.91327 1.01183 1.04788 0.90947 0.90142 0.90834 0.93246 0.93087 0.74304 0.84983 0.85390 0.94171 0.93592 0.85099 0.85928 0.75022 0.96076 0.94947 0.93333 0.89364 0.89440 0.91660 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.03 71.98 0.72 -0.22 16 2 C 0.11 1.49 6.39 86.38 0.55 2.04 16 3 N -0.72 -9.57 5.56 -463.07 -2.57 -12.14 16 4 C 0.50 10.69 7.83 87.66 0.69 11.38 16 5 O -0.60 -20.19 15.98 -3.03 -0.05 -20.24 16 6 C -0.13 -1.84 5.70 29.85 0.17 -1.67 16 7 C -0.09 -2.16 3.79 30.60 0.12 -2.04 16 8 C -0.12 -2.73 5.70 29.85 0.17 -2.56 16 9 C 0.49 17.84 7.83 87.66 0.69 18.53 16 10 O -0.61 -28.66 15.98 -3.04 -0.05 -28.70 16 11 N -0.70 -26.12 5.48 -463.05 -2.54 -28.66 16 12 C 0.18 8.26 5.50 86.38 0.48 8.74 16 13 C 0.00 0.13 1.47 -52.93 -0.08 0.05 16 14 C -0.50 -25.20 8.59 25.60 0.22 -24.98 16 15 H 0.07 3.28 7.82 -2.91 -0.02 3.25 16 16 C 0.02 1.00 5.43 84.65 0.46 1.46 16 17 N -0.91 -52.09 12.65 21.45 0.27 -51.82 16 18 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 C -0.17 -6.89 9.96 30.62 0.30 -6.58 16 23 C -0.16 -7.38 9.14 30.62 0.28 -7.10 16 24 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.42 2.20 8.47 -92.71 -0.79 1.42 16 30 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.29 8.06 -2.39 -0.02 1.28 16 33 H 0.05 1.43 8.06 -2.39 -0.02 1.41 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.41 13.13 8.33 -92.71 -0.77 12.36 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.03 1.52 8.09 -2.38 -0.02 1.51 16 39 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.06 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -78.77 365.01 1.29 -77.48 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.56 Total: 23.24 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 4.76 Total: -2.96 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -4.84 Total: -92.61 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.10 Total: -48.94 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -78.77 1.29 -77.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.301 kcal (2) G-P(sol) polarization free energy of solvation -78.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds