Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42905 * 109.47212 * 2 1 4 4 C 1.42893 * 114.00074 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85058 * 341.19719 * 4 3 2 6 6 C 1.53786 * 113.61507 * 112.50326 * 4 3 2 7 7 C 1.53779 * 87.08173 * 139.97747 * 6 4 3 8 8 H 1.09004 * 113.61316 * 89.11958 * 7 6 4 9 9 N 1.46500 * 113.69342 * 220.00635 * 7 6 4 10 10 C 1.34771 * 120.00372 * 252.54046 * 9 7 6 11 11 O 1.21593 * 120.00020 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00489 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00433 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47447 * 181.05038 * 13 12 10 15 15 C 1.50699 * 115.54608 * 39.68169 * 14 13 12 16 16 H 1.07994 * 120.00528 * 264.53601 * 15 14 13 17 17 C 1.37884 * 120.00033 * 84.53482 * 15 14 13 18 18 N 1.31515 * 119.99476 * 352.91870 * 17 15 14 19 19 Si 1.86795 * 120.00144 * 172.91562 * 17 15 14 20 20 H 1.48504 * 109.47198 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47187 * 120.00333 * 19 17 15 22 22 H 1.48500 * 109.47001 * 240.00398 * 19 17 15 23 23 C 1.52996 * 117.49971 * 253.97658 * 14 13 12 24 24 C 1.52994 * 117.50171 * 185.35257 * 14 13 12 25 25 C 1.53776 * 87.08254 * 334.56794 * 7 6 4 26 26 H 1.08998 * 109.48028 * 60.00092 * 1 2 3 27 27 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47199 * 299.99410 * 1 2 3 29 29 H 1.09004 * 109.47199 * 240.00590 * 2 1 3 30 30 H 1.08998 * 109.47729 * 120.00364 * 2 1 3 31 31 H 1.08998 * 113.61592 * 254.53279 * 6 4 3 32 32 H 1.09000 * 113.61408 * 25.43280 * 6 4 3 33 33 H 0.97005 * 119.99812 * 72.53660 * 9 7 6 34 34 H 0.97005 * 119.99695 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47401 * 301.05459 * 13 12 10 36 36 H 1.08999 * 109.46843 * 61.05110 * 13 12 10 37 37 H 0.97003 * 119.99700 * 185.02908 * 18 17 15 38 38 H 1.08996 * 117.50318 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49526 * 145.01965 * 23 14 13 40 40 H 1.08997 * 117.50002 * 214.98413 * 24 14 13 41 41 H 1.09000 * 117.49575 * 359.97438 * 24 14 13 42 42 H 1.08998 * 113.61357 * 270.88264 * 25 7 6 43 43 H 1.08997 * 113.61714 * 139.98048 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9279 0.5457 0.3228 6 6 4.0018 2.0466 -1.3025 7 6 4.9895 2.8315 -0.4233 8 1 5.9139 2.2921 -0.2165 9 7 5.2218 4.2040 -0.8799 10 6 6.3946 4.5330 -1.4566 11 8 7.2602 3.6907 -1.5975 12 7 6.6082 5.7955 -1.8772 13 6 7.8833 6.1532 -2.5036 14 6 7.8762 7.6407 -2.8616 15 6 7.2356 8.5506 -1.8454 16 1 6.2015 8.8411 -1.9566 17 6 7.9699 9.0124 -0.7736 18 7 9.1829 8.5512 -0.5601 19 14 7.2419 10.2929 0.3751 20 1 5.8727 10.6446 -0.0798 21 1 7.1793 9.7432 1.7531 22 1 8.0947 11.5086 0.3653 23 6 7.7233 8.0112 -4.3382 24 6 9.0744 8.1853 -3.6417 25 6 3.9488 2.7252 0.7038 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.4805 1.3052 -1.9423 32 1 3.2978 2.6807 -1.8414 33 1 4.5314 4.8761 -0.7673 34 1 5.9178 6.4675 -1.7645 35 1 8.6988 5.9504 -1.8093 36 1 8.0217 5.5622 -3.4090 37 1 9.6715 8.8205 0.2334 38 1 7.6273 7.1953 -5.0545 39 1 7.1592 8.9134 -4.5748 40 1 9.3992 9.2019 -3.4201 41 1 9.8680 7.4840 -3.8995 42 1 3.2303 3.5448 0.7135 43 1 4.3848 2.5317 1.6839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458723810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = -38.821801 kcal Electronic energy + Delta-G solvation = -22038.249494 eV Core-core repulsion = 18698.898845 eV Total energy + Delta-G solvation = -3339.350649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01540 -38.74417 -36.90812 -36.31608 -33.21631 -32.55773 -32.00464 -30.98145 -26.29518 -25.81028 -25.29810 -23.70167 -22.95916 -21.14902 -20.23127 -19.94222 -19.39273 -17.52665 -17.30976 -16.20723 -15.86612 -15.61168 -15.24080 -14.80655 -14.53198 -14.26477 -13.82030 -13.60513 -13.28825 -12.89994 -12.78293 -12.61995 -12.53559 -12.15851 -11.74919 -11.66227 -11.59082 -11.09467 -11.08224 -11.04781 -10.91572 -10.85955 -10.52831 -10.22074 -9.69448 -9.59298 -9.42960 -8.93066 -8.71905 -8.51417 -8.26699 -7.79638 -6.09870 -4.18994 3.19986 3.22794 3.32364 3.33883 3.67000 3.85687 4.32746 4.45077 4.47883 4.71379 4.78768 4.89555 4.96433 4.99706 5.09297 5.20253 5.25978 5.35280 5.46283 5.61673 5.66448 5.68363 5.81568 5.89793 5.94674 6.07330 6.16279 6.34524 6.52066 6.61287 6.74688 6.90456 6.94670 7.08350 7.11280 7.36553 7.43151 7.50717 7.71488 7.78965 8.34209 8.80160 8.84630 9.33370 9.48178 10.97843 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.003331 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.821946 B = 8404.915335 C = 9052.068741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.064 3.936 5 H 0.089 0.911 6 C -0.169 4.169 7 C 0.150 3.850 8 H 0.116 0.884 9 N -0.740 5.740 10 C 0.698 3.302 11 O -0.610 6.610 12 N -0.712 5.712 13 C 0.184 3.816 14 C 0.028 3.972 15 C -0.503 4.503 16 H 0.061 0.939 17 C 0.077 3.923 18 N -0.869 5.869 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.152 4.152 25 C -0.145 4.145 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.395 0.605 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 -13.323 1.563 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.006 3.994 5 H 0.107 0.893 6 C -0.209 4.209 7 C 0.043 3.957 8 H 0.133 0.867 9 N -0.395 5.395 10 C 0.397 3.603 11 O -0.490 6.490 12 N -0.365 5.365 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.128 4.128 18 N -0.504 5.504 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.248 4.248 24 C -0.190 4.190 25 C -0.183 4.183 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.229 0.771 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.387 -13.830 1.504 18.627 hybrid contribution -0.711 1.124 0.815 1.560 sum -13.098 -12.706 2.319 18.395 Atomic orbital electron populations 1.21748 0.93915 1.02122 1.03140 1.22500 0.95509 0.84164 0.99975 1.87951 1.20628 1.26096 1.94629 1.23448 0.80974 0.97778 0.97198 0.89298 1.24052 0.98951 1.00360 0.97509 1.21850 0.97263 0.83025 0.93570 0.86659 1.44989 1.17227 1.11218 1.66099 1.16090 0.82085 0.83540 0.78546 1.90840 1.44736 1.49819 1.63620 1.45126 1.19874 1.08253 1.63235 1.20697 0.83778 0.94708 0.94886 1.19045 0.98401 0.91186 0.88618 1.20322 0.97180 1.28492 1.08108 0.92119 1.24991 0.94526 0.95829 0.97481 1.69994 1.11099 1.42979 1.26376 0.86604 0.79321 0.81832 0.80629 1.19664 1.21061 1.20946 1.23079 1.02314 1.01730 0.97676 1.22496 0.90292 1.01405 1.04856 1.23644 0.97955 0.98059 0.98654 0.91840 0.91256 0.91895 0.93392 0.93450 0.90961 0.88961 0.77073 0.76403 0.91737 0.94867 0.92898 0.91592 0.90452 0.89941 0.91656 0.88668 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.67 16 2 C 0.06 0.45 6.50 37.15 0.24 0.69 16 3 O -0.37 -4.07 10.35 -35.23 -0.36 -4.43 16 4 C 0.06 0.65 4.31 -25.91 -0.11 0.54 16 5 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 6 C -0.17 -1.95 7.71 -25.92 -0.20 -2.15 16 7 C 0.15 1.97 4.24 -67.12 -0.28 1.68 16 8 H 0.12 1.68 7.46 -51.93 -0.39 1.29 16 9 N -0.74 -11.29 5.36 -57.88 -0.31 -11.60 16 10 C 0.70 14.01 8.57 -86.92 -0.74 13.27 16 11 O -0.61 -14.39 15.94 5.28 0.08 -14.30 16 12 N -0.71 -14.74 5.34 -65.23 -0.35 -15.08 16 13 C 0.18 4.25 5.75 -4.04 -0.02 4.23 16 14 C 0.03 0.67 1.71 -155.66 -0.27 0.40 16 15 C -0.50 -12.71 7.43 -34.44 -0.26 -12.97 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.08 2.00 5.39 -17.82 -0.10 1.91 16 18 N -0.87 -23.98 12.97 55.43 0.72 -23.26 16 19 Si 0.89 20.22 29.55 -169.99 -5.02 15.20 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.21 -4.45 9.88 -26.73 -0.26 -4.71 16 24 C -0.15 -3.50 9.51 -26.74 -0.25 -3.75 16 25 C -0.14 -1.53 7.66 -25.92 -0.20 -1.73 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.40 5.12 8.74 -40.82 -0.36 4.77 16 34 H 0.40 7.79 7.47 -40.82 -0.30 7.48 16 35 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.03 0.75 7.95 -51.93 -0.41 0.34 16 37 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -30.31 359.30 -9.23 -39.54 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.33 Total: 11.79 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.08 Total: -3.26 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.06 Total: -49.94 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.28 Total: -18.73 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.31 -9.23 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458723810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.720 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds