Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.50698 * 109.47485 * 239.99738 * 2 1 3 5 5 H 1.07998 * 119.99924 * 240.00521 * 4 2 1 6 6 C 1.37878 * 119.99686 * 59.99634 * 4 2 1 7 7 N 1.31519 * 120.00266 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99890 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46820 * 90.00225 * 8 6 4 10 10 H 1.48496 * 109.47269 * 210.00295 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00386 * 8 6 4 12 12 N 1.46902 * 109.46917 * 119.99339 * 2 1 3 13 13 C 1.46889 * 111.00294 * 287.51044 * 12 2 1 14 14 C 1.46900 * 110.99945 * 51.47031 * 12 2 1 15 15 N 1.46499 * 109.47538 * 154.70621 * 14 12 2 16 16 C 1.47331 * 125.58311 * 89.99704 * 15 14 12 17 17 C 1.53323 * 103.42660 * 179.97438 * 16 15 14 18 18 C 1.53485 * 110.79956 * 239.85551 * 17 16 15 19 19 C 1.55072 * 103.99383 * 215.46253 * 18 17 16 20 20 C 1.54964 * 102.84929 * 37.26137 * 19 18 17 21 21 C 1.53088 * 111.02604 * 120.56035 * 17 16 15 22 22 O 1.44850 * 104.84501 * 0.02562 * 17 16 15 23 23 C 1.34069 * 109.10802 * 359.75231 * 22 17 16 24 24 O 1.21513 * 123.10862 * 180.24518 * 23 22 17 25 25 H 1.08999 * 109.46983 * 293.74781 * 1 2 3 26 26 H 1.09000 * 109.46736 * 53.74517 * 1 2 3 27 27 H 1.09001 * 109.46718 * 173.74869 * 1 2 3 28 28 H 0.96998 * 120.00152 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47191 * 183.95307 * 13 12 2 30 30 H 1.08994 * 109.47803 * 303.95150 * 13 12 2 31 31 H 1.09003 * 109.47109 * 63.95902 * 13 12 2 32 32 H 1.08998 * 109.47020 * 274.71175 * 14 12 2 33 33 H 1.09004 * 109.47039 * 34.70389 * 14 12 2 34 34 H 1.09000 * 110.62586 * 298.45899 * 16 15 14 35 35 H 1.08997 * 110.62568 * 61.48789 * 16 15 14 36 36 H 1.08993 * 110.52454 * 334.09183 * 18 17 16 37 37 H 1.08994 * 110.52373 * 96.83770 * 18 17 16 38 38 H 1.08996 * 110.74122 * 278.92307 * 19 18 17 39 39 H 1.09002 * 110.73508 * 155.60172 * 19 18 17 40 40 H 1.08999 * 110.48323 * 203.80461 * 20 19 18 41 41 H 1.09011 * 110.48117 * 81.17833 * 20 19 18 42 42 H 1.09002 * 110.09350 * 240.27437 * 21 17 16 43 43 H 1.08995 * 110.09255 * 1.86978 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1416 -5.1123 11 1 3.6294 -1.7584 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.8061 0.1234 2.4023 14 6 1.3897 -2.0120 1.3397 15 7 2.2669 -2.8921 2.1158 16 6 2.2482 -3.0457 3.5809 17 6 3.3547 -4.0736 3.8452 18 6 2.7870 -5.3192 4.5394 19 6 3.9191 -5.7603 5.5029 20 6 4.4938 -4.4099 6.0005 21 6 4.4372 -3.4928 4.7587 22 8 3.8824 -4.3959 2.5353 23 6 3.2151 -3.6937 1.6084 24 8 3.4498 -3.7737 0.4188 25 1 -0.3633 0.4138 0.9406 26 1 -0.3633 0.6077 -0.8287 27 1 -0.3633 -1.0216 -0.1119 28 1 0.7095 1.1617 -3.4844 29 1 2.2403 -0.3813 3.2654 30 1 2.2828 1.0948 2.2719 31 1 0.7368 0.2618 2.5623 32 1 0.4345 -1.9058 1.8538 33 1 1.2247 -2.4426 0.3520 34 1 2.4790 -2.0989 4.0692 35 1 1.2829 -3.4260 3.9149 36 1 1.8858 -5.0678 5.0984 37 1 2.5794 -6.1020 3.8099 38 1 4.6798 -6.3303 4.9695 39 1 3.5151 -6.3377 6.3345 40 1 5.5233 -4.5341 6.3364 41 1 3.8763 -4.0049 6.8023 42 1 5.3998 -3.4953 4.2473 43 1 4.1724 -2.4778 5.0547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494449412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = -59.872604 kcal Electronic energy + Delta-G solvation = -23701.785864 eV Core-core repulsion = 20361.522383 eV Total energy + Delta-G solvation = -3340.263481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57375 -38.10330 -37.25848 -35.74835 -34.46821 -32.48041 -29.65860 -29.17727 -28.82856 -26.76190 -25.21770 -24.42180 -23.58408 -21.63374 -21.03235 -20.26010 -19.14673 -16.83661 -16.67423 -16.49440 -16.01462 -15.56105 -15.12302 -14.63324 -14.49237 -14.29059 -13.68243 -13.61793 -13.48375 -13.13141 -12.89776 -12.40906 -12.07096 -11.95642 -11.85884 -11.55117 -11.43786 -11.41539 -11.22703 -10.97403 -10.84714 -10.76024 -10.70996 -10.45037 -10.32057 -10.17255 -10.03213 -9.82394 -8.96463 -8.56536 -8.30871 -7.33329 -5.95692 -3.97687 2.84626 3.25398 3.41094 3.46500 3.57954 3.62652 4.07057 4.14851 4.31880 4.52372 4.78218 4.92759 5.00766 5.07900 5.10400 5.28988 5.29852 5.37110 5.38810 5.43730 5.56072 5.61696 5.66457 5.77867 5.84670 5.89947 5.97586 6.04706 6.10752 6.31569 6.40106 6.66608 6.73520 6.80451 7.06450 7.31541 7.61047 7.81556 7.94820 8.07021 8.30591 8.55429 8.60011 9.14718 9.68732 11.11862 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.004743 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.069597 B = 5901.866971 C = 6558.853766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.217 3.783 3 H 0.043 0.957 4 C -0.501 4.501 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.549 5.549 13 C 0.026 3.974 14 C 0.316 3.684 15 N -0.618 5.618 16 C 0.075 3.925 17 C 0.092 3.908 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.126 4.126 22 O -0.324 6.324 23 C 0.641 3.359 24 O -0.505 6.505 25 H 0.008 0.992 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -8.620 19.713 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.111 3.889 3 H 0.061 0.939 4 C -0.540 4.540 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.274 5.274 13 C -0.122 4.122 14 C 0.107 3.893 15 N -0.367 5.367 16 C -0.049 4.049 17 C 0.054 3.946 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.163 4.163 22 O -0.236 6.236 23 C 0.393 3.607 24 O -0.387 6.387 25 H 0.027 0.973 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.777 -8.755 18.812 20.825 hybrid contribution -0.661 -0.023 -0.648 0.926 sum 1.116 -8.778 18.164 20.205 Atomic orbital electron populations 1.22459 1.00478 1.00412 0.99632 1.19327 0.89759 0.94453 0.85365 0.93903 1.21267 1.30592 1.12791 0.89332 0.90967 1.24894 0.95115 0.95026 0.99033 1.69899 1.37414 1.23152 1.23393 0.86510 0.79743 0.79174 0.82193 1.20804 1.21477 1.19562 1.61959 1.59279 1.02499 1.03701 1.22374 0.98316 0.98240 0.93298 1.21724 0.85983 0.85783 0.95846 1.48520 1.38481 1.43689 1.06021 1.22991 0.99070 0.99404 0.83455 1.23117 0.93509 0.95341 0.82671 1.22625 0.98630 0.96278 0.98657 1.22546 0.97744 0.97227 0.98571 1.22399 1.01572 0.95084 0.96891 1.22434 0.99210 0.99488 0.95211 1.87283 1.56968 1.62625 1.16723 1.18619 0.78536 0.78089 0.85412 1.91092 1.68557 1.68213 1.10865 0.97305 0.89307 0.95039 0.93119 0.93518 0.91974 0.96287 0.93312 0.86937 0.89423 0.89649 0.89501 0.89945 0.90900 0.91017 0.91048 0.91136 0.89685 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.15 37.16 0.30 -3.66 16 2 C 0.22 5.42 2.28 -68.86 -0.16 5.26 16 3 H 0.04 1.17 7.97 -51.93 -0.41 0.76 16 4 C -0.50 -14.23 7.67 -34.44 -0.26 -14.49 16 5 H 0.07 2.20 7.56 -52.49 -0.40 1.80 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -25.84 11.39 55.43 0.63 -25.21 16 8 Si 0.90 22.73 29.54 -169.99 -5.02 17.71 16 9 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -7.07 7.11 56.52 0.40 -6.66 16 12 N -0.55 -11.75 4.78 -240.20 -1.15 -12.89 16 13 C 0.03 0.45 9.22 60.06 0.55 1.01 16 14 C 0.32 6.17 4.30 -63.32 -0.27 5.90 16 15 N -0.62 -10.75 3.19 -182.51 -0.58 -11.34 16 16 C 0.07 0.89 6.75 -3.42 -0.02 0.87 16 17 C 0.09 1.06 1.35 -90.16 -0.12 0.94 16 18 C -0.12 -1.09 6.09 -25.38 -0.15 -1.24 16 19 C -0.12 -0.91 6.92 -24.60 -0.17 -1.08 16 20 C -0.12 -0.85 6.85 -24.92 -0.17 -1.02 16 21 C -0.13 -1.20 6.33 -25.91 -0.16 -1.36 16 22 O -0.32 -5.47 10.45 -38.59 -0.40 -5.88 16 23 C 0.64 12.99 8.86 53.77 0.48 13.46 16 24 O -0.50 -12.79 17.55 -19.10 -0.34 -13.13 16 25 H 0.01 0.17 6.65 -51.93 -0.35 -0.18 16 26 H 0.09 2.30 6.26 -51.93 -0.33 1.97 16 27 H 0.03 0.71 7.00 -51.93 -0.36 0.34 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.68 6.14 -51.93 -0.32 0.36 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.02 0.31 6.69 -51.93 -0.35 -0.04 16 32 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 33 H 0.11 2.59 6.22 -51.93 -0.32 2.26 16 34 H 0.09 0.94 5.46 -51.93 -0.28 0.66 16 35 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16 36 H 0.09 0.58 7.53 -51.93 -0.39 0.19 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.08 0.70 7.15 -51.93 -0.37 0.33 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -32.94 332.91 -8.84 -41.78 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.74 Total: -2.25 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.26 Total: 6.19 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -1.10 Total: -49.44 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.74 Total: -19.01 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.94 -8.84 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494449412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.096 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds