Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.50698 * 109.47485 * 239.99738 * 2 1 3 5 5 H 1.07998 * 119.99924 * 240.00521 * 4 2 1 6 6 C 1.37878 * 119.99686 * 59.99634 * 4 2 1 7 7 N 1.31519 * 120.00266 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99890 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46820 * 90.00225 * 8 6 4 10 10 H 1.48496 * 109.47269 * 210.00295 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00386 * 8 6 4 12 12 N 1.46902 * 109.46917 * 119.99339 * 2 1 3 13 13 C 1.46889 * 111.00294 * 287.51044 * 12 2 1 14 14 C 1.46900 * 110.99945 * 51.47031 * 12 2 1 15 15 N 1.46499 * 109.47538 * 154.70621 * 14 12 2 16 16 C 1.47331 * 125.58311 * 89.99704 * 15 14 12 17 17 C 1.53323 * 103.42660 * 179.97438 * 16 15 14 18 18 C 1.53485 * 110.79956 * 239.85551 * 17 16 15 19 19 C 1.55072 * 103.99383 * 215.46253 * 18 17 16 20 20 C 1.54964 * 102.84929 * 37.26137 * 19 18 17 21 21 C 1.53088 * 111.02604 * 120.56035 * 17 16 15 22 22 O 1.44850 * 104.84501 * 0.02562 * 17 16 15 23 23 C 1.34069 * 109.10802 * 359.75231 * 22 17 16 24 24 O 1.21513 * 123.10862 * 180.24518 * 23 22 17 25 25 H 1.08999 * 109.46983 * 293.74781 * 1 2 3 26 26 H 1.09000 * 109.46736 * 53.74517 * 1 2 3 27 27 H 1.09001 * 109.46718 * 173.74869 * 1 2 3 28 28 H 0.96998 * 120.00152 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47191 * 183.95307 * 13 12 2 30 30 H 1.08994 * 109.47803 * 303.95150 * 13 12 2 31 31 H 1.09003 * 109.47109 * 63.95902 * 13 12 2 32 32 H 1.08998 * 109.47020 * 274.71175 * 14 12 2 33 33 H 1.09004 * 109.47039 * 34.70389 * 14 12 2 34 34 H 1.09000 * 110.62586 * 298.45899 * 16 15 14 35 35 H 1.08997 * 110.62568 * 61.48789 * 16 15 14 36 36 H 1.08993 * 110.52454 * 334.09183 * 18 17 16 37 37 H 1.08994 * 110.52373 * 96.83770 * 18 17 16 38 38 H 1.08996 * 110.74122 * 278.92307 * 19 18 17 39 39 H 1.09002 * 110.73508 * 155.60172 * 19 18 17 40 40 H 1.08999 * 110.48323 * 203.80461 * 20 19 18 41 41 H 1.09011 * 110.48117 * 81.17833 * 20 19 18 42 42 H 1.09002 * 110.09350 * 240.27437 * 21 17 16 43 43 H 1.08995 * 110.09255 * 1.86978 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1416 -5.1123 11 1 3.6294 -1.7584 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.8061 0.1234 2.4023 14 6 1.3897 -2.0120 1.3397 15 7 2.2669 -2.8921 2.1158 16 6 2.2482 -3.0457 3.5809 17 6 3.3547 -4.0736 3.8452 18 6 2.7870 -5.3192 4.5394 19 6 3.9191 -5.7603 5.5029 20 6 4.4938 -4.4099 6.0005 21 6 4.4372 -3.4928 4.7587 22 8 3.8824 -4.3959 2.5353 23 6 3.2151 -3.6937 1.6084 24 8 3.4498 -3.7737 0.4188 25 1 -0.3633 0.4138 0.9406 26 1 -0.3633 0.6077 -0.8287 27 1 -0.3633 -1.0216 -0.1119 28 1 0.7095 1.1617 -3.4844 29 1 2.2403 -0.3813 3.2654 30 1 2.2828 1.0948 2.2719 31 1 0.7368 0.2618 2.5623 32 1 0.4345 -1.9058 1.8538 33 1 1.2247 -2.4426 0.3520 34 1 2.4790 -2.0989 4.0692 35 1 1.2829 -3.4260 3.9149 36 1 1.8858 -5.0678 5.0984 37 1 2.5794 -6.1020 3.8099 38 1 4.6798 -6.3303 4.9695 39 1 3.5151 -6.3377 6.3345 40 1 5.5233 -4.5341 6.3364 41 1 3.8763 -4.0049 6.8023 42 1 5.3998 -3.4953 4.2473 43 1 4.1724 -2.4778 5.0547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494449412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = -82.739152 kcal Electronic energy + Delta-G solvation = -23702.777431 eV Core-core repulsion = 20361.522383 eV Total energy + Delta-G solvation = -3341.255048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.81272 -39.40545 -38.83183 -36.97021 -35.98349 -34.47223 -30.86335 -30.49924 -29.83843 -28.10830 -27.25561 -25.46283 -25.28331 -22.88668 -21.79189 -21.59810 -20.69488 -18.45441 -18.16068 -17.76854 -17.44823 -16.92359 -16.58828 -16.07563 -15.83316 -15.65128 -15.24563 -14.87070 -14.70175 -14.30443 -14.07296 -13.79570 -13.76068 -13.40580 -13.21840 -12.83362 -12.78616 -12.63951 -12.55746 -12.38076 -12.19876 -12.09126 -12.05808 -11.98417 -11.78754 -11.61145 -11.49622 -11.35520 -10.98307 -10.53589 -9.95799 -8.97217 -8.14229 -6.21394 1.35391 1.36519 1.46410 1.51031 1.75088 2.41659 2.51547 3.14917 3.19412 3.36763 3.47252 3.50310 3.81345 4.17301 4.21350 4.28949 4.41783 4.47734 4.51846 4.56061 4.64692 4.66593 4.68522 4.78916 4.87806 4.89422 4.92639 5.03392 5.04497 5.06894 5.17531 5.22713 5.28555 5.42790 5.48041 5.48313 5.69467 5.81473 6.17834 6.41268 6.44542 6.70741 6.89973 7.09329 7.47712 8.91503 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.004743 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.069597 B = 5901.866971 C = 6558.853766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.224 3.776 3 H 0.015 0.985 4 C -0.514 4.514 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.914 5.914 8 Si 0.943 3.057 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.571 5.571 13 C 0.028 3.972 14 C 0.324 3.676 15 N -0.613 5.613 16 C 0.073 3.927 17 C 0.079 3.921 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.128 4.128 22 O -0.337 6.337 23 C 0.636 3.364 24 O -0.575 6.575 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -8.779 23.128 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.117 3.883 3 H 0.033 0.967 4 C -0.553 4.553 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.554 5.554 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.297 5.297 13 C -0.119 4.119 14 C 0.114 3.886 15 N -0.361 5.361 16 C -0.049 4.049 17 C 0.042 3.958 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.165 4.165 22 O -0.249 6.249 23 C 0.390 3.610 24 O -0.462 6.462 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.632 -8.917 22.304 24.028 hybrid contribution -0.259 -0.010 -1.577 1.598 sum 0.373 -8.926 20.726 22.570 Atomic orbital electron populations 1.22206 0.98942 1.00014 1.00161 1.19002 0.90732 0.92641 0.85917 0.96740 1.21372 1.30369 1.12078 0.91465 0.94116 1.25439 0.95449 0.95713 1.01039 1.69969 1.37805 1.23636 1.23958 0.85785 0.78453 0.78618 0.80102 1.20083 1.19931 1.21365 1.61753 1.60235 1.03545 1.04186 1.22441 0.99648 0.97663 0.92176 1.21469 0.87521 0.84726 0.94863 1.48462 1.36992 1.42148 1.08539 1.23458 1.01059 1.00751 0.79638 1.23745 0.94281 0.97055 0.80671 1.22716 1.00266 0.94397 0.98525 1.22565 0.96932 0.97649 0.98828 1.22403 1.02537 0.94019 0.96098 1.22513 0.97337 1.01009 0.95688 1.87264 1.56895 1.62079 1.18616 1.18864 0.78781 0.78301 0.85082 1.91026 1.70661 1.70453 1.14073 0.94021 0.92089 0.95023 0.92847 0.90396 0.92576 0.94584 0.89711 0.91440 0.87339 0.86001 0.86224 0.91474 0.92582 0.88583 0.90527 0.88623 0.91914 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.06 8.15 71.98 0.59 -6.47 16 2 C 0.22 11.37 2.28 44.17 0.10 11.47 16 3 H 0.01 0.82 7.97 -2.39 -0.02 0.80 16 4 C -0.51 -30.32 7.67 25.60 0.20 -30.12 16 5 H 0.04 2.63 7.56 -2.91 -0.02 2.61 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -53.27 11.39 21.45 0.24 -53.03 16 8 Si 0.94 47.93 29.54 68.60 2.03 49.96 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 12 N -0.57 -24.16 4.78 -913.87 -4.37 -28.53 16 13 C 0.03 0.89 9.22 127.69 1.18 2.07 16 14 C 0.32 12.43 4.30 170.81 0.73 13.16 16 15 N -0.61 -20.74 3.19 -962.75 -3.07 -23.81 16 16 C 0.07 1.46 6.75 86.33 0.58 2.05 16 17 C 0.08 1.66 1.35 -10.49 -0.01 1.64 16 18 C -0.12 -1.74 6.09 31.47 0.19 -1.55 16 19 C -0.12 -1.41 6.92 31.98 0.22 -1.19 16 20 C -0.11 -1.16 6.85 31.77 0.22 -0.94 16 21 C -0.13 -2.10 6.33 31.13 0.20 -1.90 16 22 O -0.34 -11.53 10.45 -50.11 -0.52 -12.05 16 23 C 0.64 26.55 8.86 129.89 1.15 27.70 16 24 O -0.57 -31.08 17.55 19.62 0.34 -30.74 16 25 H 0.04 1.59 6.65 -2.39 -0.02 1.58 16 26 H 0.06 3.15 6.26 -2.39 -0.01 3.14 16 27 H 0.03 1.41 7.00 -2.39 -0.02 1.39 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.08 1.93 6.14 -2.39 -0.01 1.92 16 30 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 31 H 0.04 1.01 6.69 -2.39 -0.02 1.00 16 32 H 0.09 2.63 7.62 -2.39 -0.02 2.61 16 33 H 0.07 3.22 6.22 -2.39 -0.01 3.20 16 34 H 0.11 1.78 5.46 -2.39 -0.01 1.76 16 35 H 0.12 1.64 7.40 -2.39 -0.02 1.62 16 36 H 0.12 0.96 7.53 -2.39 -0.02 0.94 16 37 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.06 1.32 8.00 -2.39 -0.02 1.30 16 43 H 0.10 1.29 7.15 -2.39 -0.02 1.27 16 Total: -1.00 -77.29 332.91 1.44 -75.84 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.00 Total: 4.68 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 5.79 Total: 17.67 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -7.19 Total: -105.36 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.18 Total: -42.79 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -77.29 1.44 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494449412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.895 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds