Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46768 * 2 1 4 4 C 1.50698 * 109.47411 * 120.00188 * 2 1 3 5 5 H 1.07993 * 119.99921 * 120.00405 * 4 2 1 6 6 C 1.37875 * 119.99989 * 300.00128 * 4 2 1 7 7 N 1.31516 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46971 * 90.00268 * 8 6 4 10 10 H 1.48506 * 109.46753 * 210.00161 * 8 6 4 11 11 H 1.48494 * 109.46838 * 330.00023 * 8 6 4 12 12 N 1.46896 * 109.47412 * 240.00639 * 2 1 3 13 13 C 1.46901 * 110.99737 * 306.04169 * 12 2 1 14 14 C 1.46903 * 111.00248 * 69.99187 * 12 2 1 15 15 N 1.46500 * 109.47082 * 155.00124 * 14 12 2 16 16 C 1.47407 * 125.59524 * 269.98642 * 15 14 12 17 17 C 1.53060 * 103.29411 * 180.02562 * 16 15 14 18 18 C 1.53167 * 111.48858 * 238.33297 * 17 16 15 19 19 C 1.54137 * 106.30964 * 216.79396 * 18 17 16 20 20 C 1.54352 * 106.56599 * 359.24425 * 19 18 17 21 21 C 1.53799 * 111.12311 * 120.99060 * 17 16 15 22 22 O 1.44538 * 105.15639 * 359.97438 * 17 16 15 23 23 C 1.34179 * 108.96595 * 0.02562 * 22 17 16 24 24 O 1.21507 * 123.11125 * 180.02562 * 23 22 17 25 25 H 1.08995 * 109.47342 * 299.99285 * 1 2 3 26 26 H 1.08995 * 109.47232 * 60.00331 * 1 2 3 27 27 H 1.09004 * 109.46495 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00138 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47406 * 183.95220 * 13 12 2 30 30 H 1.08999 * 109.47392 * 303.95604 * 13 12 2 31 31 H 1.08998 * 109.47373 * 63.95537 * 13 12 2 32 32 H 1.09002 * 109.46819 * 35.00833 * 14 12 2 33 33 H 1.08994 * 109.47588 * 275.00442 * 14 12 2 34 34 H 1.09006 * 110.65693 * 61.58856 * 16 15 14 35 35 H 1.08994 * 110.65728 * 298.48589 * 16 15 14 36 36 H 1.09005 * 110.08869 * 97.58522 * 18 17 16 37 37 H 1.08997 * 110.09092 * 336.00747 * 18 17 16 38 38 H 1.09000 * 110.03559 * 118.52046 * 19 18 17 39 39 H 1.08994 * 110.03662 * 239.96405 * 19 18 17 40 40 H 1.09005 * 110.46065 * 142.11093 * 20 19 18 41 41 H 1.09004 * 110.45656 * 264.68250 * 20 19 18 42 42 H 1.08999 * 110.77549 * 39.37015 * 21 17 16 43 43 H 1.08997 * 110.93619 * 276.03027 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9491 5.1122 11 1 2.4883 -2.5653 3.7120 12 7 2.0197 -0.6923 -1.1995 13 6 1.4345 -2.0353 -1.3079 14 6 1.7529 0.0974 -2.4091 15 7 2.7156 -0.2660 -3.4518 16 6 4.0255 0.3736 -3.6708 17 6 4.5943 -0.3904 -4.8690 18 6 5.9361 -1.0467 -4.5302 19 6 6.8044 -0.9366 -5.7990 20 6 5.9390 -0.2309 -6.8646 21 6 4.8869 0.5587 -6.0433 22 8 3.5836 -1.3660 -5.2094 23 6 2.5496 -1.2358 -4.3644 24 8 1.5553 -1.9320 -4.4198 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7082 1.1607 3.4844 29 1 1.8665 -2.5519 -2.1650 30 1 1.6467 -2.5987 -0.3992 31 1 0.3557 -1.9520 -1.4400 32 1 1.8499 1.1584 -2.1789 33 1 0.7418 -0.1071 -2.7609 34 1 4.6651 0.2492 -2.7970 35 1 3.9023 1.4295 -3.9113 36 1 5.7852 -2.0944 -4.2697 37 1 6.4125 -0.5198 -3.7036 38 1 7.6963 -0.3456 -5.5909 39 1 7.0869 -1.9306 -6.1456 40 1 6.5475 0.4503 -7.4595 41 1 5.4499 -0.9647 -7.5052 42 1 5.3034 1.5001 -5.6850 43 1 3.9884 0.7355 -6.6344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494449419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -62.320488 kcal Electronic energy + Delta-G solvation = -23467.943112 eV Core-core repulsion = 20127.573483 eV Total energy + Delta-G solvation = -3340.369629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69068 -38.26305 -37.17227 -35.85971 -34.66763 -32.52772 -29.83442 -29.16717 -28.54266 -26.74238 -25.25986 -24.77979 -23.50157 -21.72704 -20.88848 -20.27731 -19.16602 -16.98303 -16.56677 -16.50052 -16.12121 -15.78541 -15.14524 -14.77066 -14.52845 -14.31613 -13.79631 -13.55858 -13.45709 -13.37068 -12.87624 -12.51612 -12.23760 -11.86187 -11.62962 -11.56848 -11.40127 -11.35840 -11.12058 -11.03225 -10.86643 -10.73139 -10.70894 -10.58545 -10.37350 -10.23240 -10.06624 -9.96640 -9.03936 -8.69368 -8.42792 -7.31351 -6.05560 -4.09285 2.71798 3.01939 3.28926 3.35585 3.39680 3.53029 4.06451 4.14993 4.33154 4.38902 4.79085 4.91338 5.01702 5.10513 5.12935 5.26978 5.29794 5.31898 5.43716 5.55101 5.61154 5.63710 5.69183 5.82381 5.85980 5.90615 6.05595 6.10105 6.28753 6.44063 6.63380 6.67226 6.81890 6.92105 7.03965 7.34704 7.60778 7.69401 7.78334 8.02136 8.25770 8.36834 8.51156 8.96348 9.55982 11.01411 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.004203 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.234336 B = 6659.608227 C = 7111.964045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.216 3.784 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.550 5.550 13 C 0.040 3.960 14 C 0.306 3.694 15 N -0.613 5.613 16 C 0.081 3.919 17 C 0.090 3.910 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.123 4.123 22 O -0.319 6.319 23 C 0.640 3.360 24 O -0.527 6.527 25 H 0.090 0.910 26 H 0.006 0.994 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 2.117 -15.404 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.110 3.890 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.276 5.276 13 C -0.109 4.109 14 C 0.096 3.904 15 N -0.361 5.361 16 C -0.043 4.043 17 C 0.051 3.949 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.161 4.161 22 O -0.230 6.230 23 C 0.393 3.607 24 O -0.412 6.412 25 H 0.109 0.891 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.899 1.665 -15.406 18.388 hybrid contribution -0.541 -0.274 0.979 1.151 sum 9.358 1.391 -14.427 17.253 Atomic orbital electron populations 1.22452 1.00427 0.99822 1.00589 1.19317 0.89969 0.94250 0.85470 0.94246 1.21065 1.30626 1.12544 0.89461 0.91945 1.24912 0.95167 0.95138 0.98990 1.69874 1.36933 1.23102 1.23498 0.86502 0.78471 0.80042 0.82416 1.20707 1.21337 1.19940 1.62028 1.59799 1.03307 1.02432 1.22230 0.96498 0.90923 1.01223 1.21701 0.88273 0.97037 0.83408 1.48497 1.19742 1.35832 1.32043 1.22805 0.85702 0.97919 0.97870 1.23137 0.88751 0.88019 0.94944 1.22368 0.92365 1.02591 0.98878 1.22182 0.98166 1.01094 0.94557 1.22400 0.96847 0.99103 0.97673 1.22689 1.00289 0.97430 0.95652 1.87223 1.28153 1.54727 1.52903 1.18714 0.82871 0.80547 0.78569 1.91011 1.27489 1.48346 1.74312 0.89131 0.97515 0.94669 0.92949 0.93484 0.91034 0.96049 0.89197 0.92258 0.88432 0.89284 0.90010 0.89248 0.91301 0.91407 0.91176 0.91109 0.89064 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.26 37.16 0.31 -3.80 16 2 C 0.22 5.23 2.27 -68.87 -0.16 5.07 16 3 H 0.04 1.02 7.80 -51.93 -0.40 0.61 16 4 C -0.50 -13.31 7.91 -34.44 -0.27 -13.59 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.55 -11.75 4.80 -240.19 -1.15 -12.91 16 13 C 0.04 0.85 8.45 60.07 0.51 1.36 16 14 C 0.31 5.58 5.07 -63.31 -0.32 5.26 16 15 N -0.61 -10.02 3.19 -182.56 -0.58 -10.60 16 16 C 0.08 0.97 6.97 -3.51 -0.02 0.95 16 17 C 0.09 1.01 1.20 -90.09 -0.11 0.90 16 18 C -0.12 -1.19 6.15 -26.05 -0.16 -1.35 16 19 C -0.12 -0.94 6.82 -25.43 -0.17 -1.11 16 20 C -0.12 -0.94 6.84 -24.92 -0.17 -1.11 16 21 C -0.12 -1.03 5.94 -25.22 -0.15 -1.18 16 22 O -0.32 -4.98 10.58 -38.87 -0.41 -5.39 16 23 C 0.64 11.64 8.20 53.79 0.44 12.08 16 24 O -0.53 -11.44 16.23 -19.09 -0.31 -11.75 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.13 7.31 -51.93 -0.38 -0.25 16 27 H 0.03 0.83 6.41 -51.93 -0.33 0.49 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.05 1.01 6.18 -51.93 -0.32 0.69 16 30 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 31 H 0.02 0.46 6.38 -51.93 -0.33 0.13 16 32 H 0.09 1.50 7.64 -51.93 -0.40 1.11 16 33 H 0.06 1.14 7.36 -51.93 -0.38 0.76 16 34 H 0.10 1.18 7.42 -51.93 -0.39 0.79 16 35 H 0.09 0.85 7.65 -51.93 -0.40 0.46 16 36 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.09 0.74 7.51 -51.93 -0.39 0.35 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.58 7.95 -51.93 -0.41 0.17 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -30.63 333.03 -9.05 -39.68 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.84 Total: -0.90 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.37 Total: 4.97 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -1.11 Total: -47.65 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.72 Total: -17.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.63 -9.05 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494449419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.639 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds