Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46895 * 109.47543 * 2 1 4 4 C 1.46894 * 111.00159 * 287.85239 * 3 2 1 5 5 C 1.50701 * 109.47588 * 160.33548 * 4 3 2 6 6 H 1.08008 * 119.99518 * 4.69984 * 5 4 3 7 7 C 1.37877 * 120.00326 * 184.69803 * 5 4 3 8 8 N 1.31506 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99805 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47162 * 60.00371 * 9 7 5 11 11 H 1.48503 * 109.46659 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47184 * 300.00196 * 9 7 5 13 13 C 1.46901 * 111.00091 * 163.89534 * 3 2 1 14 14 N 1.46502 * 109.47304 * 278.95413 * 13 3 2 15 15 C 1.47319 * 125.58360 * 89.99837 * 14 13 3 16 16 C 1.53326 * 103.42867 * 179.73063 * 15 14 13 17 17 C 1.53487 * 110.80136 * 239.85466 * 16 15 14 18 18 C 1.55076 * 103.99363 * 215.46589 * 17 16 15 19 19 C 1.54952 * 102.85284 * 37.26138 * 18 17 16 20 20 C 1.53091 * 111.02776 * 120.56315 * 16 15 14 21 21 O 1.44846 * 104.84390 * 0.02562 * 16 15 14 22 22 C 1.34071 * 109.10611 * 359.97438 * 21 16 15 23 23 O 1.21512 * 123.10260 * 179.97438 * 22 21 16 24 24 H 1.08998 * 109.47707 * 179.17937 * 1 2 3 25 25 H 1.09009 * 109.47148 * 299.17937 * 1 2 3 26 26 H 1.09000 * 109.47105 * 59.17292 * 1 2 3 27 27 H 1.09007 * 109.47238 * 240.00119 * 2 1 3 28 28 H 1.08999 * 109.47330 * 120.00227 * 2 1 3 29 29 H 1.09009 * 109.47266 * 280.33345 * 4 3 2 30 30 H 1.09000 * 109.47709 * 40.33253 * 4 3 2 31 31 H 0.96997 * 120.00440 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47054 * 158.95860 * 13 3 2 33 33 H 1.08997 * 109.47484 * 38.95987 * 13 3 2 34 34 H 1.08999 * 110.63456 * 298.22072 * 15 14 13 35 35 H 1.09000 * 110.63185 * 61.24640 * 15 14 13 36 36 H 1.08999 * 110.52568 * 334.09213 * 17 16 15 37 37 H 1.08998 * 110.52252 * 96.84027 * 17 16 15 38 38 H 1.09005 * 110.73334 * 278.92131 * 18 17 16 39 39 H 1.08999 * 110.73759 * 155.60593 * 18 17 16 40 40 H 1.09000 * 110.48607 * 203.81106 * 19 18 17 41 41 H 1.09004 * 110.48058 * 81.17733 * 19 18 17 42 42 H 1.08993 * 110.09439 * 240.27840 * 20 16 15 43 43 H 1.09005 * 110.08717 * 1.86744 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7988 2.0214 -1.3053 5 6 1.8493 3.5194 -1.1488 6 1 2.1025 3.9543 -0.1931 7 6 1.5722 4.3348 -2.2256 8 7 1.2634 3.8054 -3.3891 9 14 1.6341 6.1917 -2.0312 10 1 2.9992 6.6005 -1.6136 11 1 1.2982 6.8363 -3.3262 12 1 0.6533 6.6144 -0.9993 13 6 3.4374 1.4420 0.3804 14 7 3.5548 1.3732 1.8391 15 6 3.6881 0.1382 2.6311 16 6 3.7777 0.6486 4.0742 17 6 5.1012 0.2202 4.7226 18 6 4.7231 -0.0531 6.2016 19 6 3.3168 -0.6931 6.0851 20 6 2.6427 0.0795 4.9296 21 8 3.6881 2.0901 3.9642 22 6 3.5641 2.4247 2.6719 23 8 3.4683 3.5744 2.2903 24 1 -0.3634 -1.0275 -0.0147 25 1 -0.3634 0.5011 0.8973 26 1 -0.3633 0.5266 -0.8825 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.5751 1.7025 -2.0011 30 1 0.8224 1.7292 -1.6916 31 1 1.0681 4.3790 -4.1465 32 1 3.8718 2.3763 0.0247 33 1 3.9678 0.6013 -0.0668 34 1 2.8119 -0.4972 2.5022 35 1 4.5963 -0.3981 2.3564 36 1 5.4818 -0.6862 4.2518 37 1 5.8358 1.0229 4.6581 38 1 4.6779 0.8780 6.7667 39 1 5.4273 -0.7488 6.6578 40 1 2.7582 -0.5577 7.0113 41 1 3.3987 -1.7519 5.8393 42 1 2.0312 0.8894 5.3272 43 1 2.0287 -0.5969 4.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494553985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -65.413882 kcal Electronic energy + Delta-G solvation = -23535.675214 eV Core-core repulsion = 20195.171445 eV Total energy + Delta-G solvation = -3340.503768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59794 -38.08327 -37.10075 -35.76970 -34.36118 -32.52103 -30.43396 -29.28161 -29.18417 -27.12374 -25.23269 -24.19060 -22.57667 -21.63720 -21.02615 -20.52970 -19.50525 -16.86690 -16.70949 -16.51072 -16.16162 -15.64318 -15.07077 -14.79696 -14.44783 -14.33772 -13.93332 -13.80486 -13.47807 -13.15836 -13.11801 -12.43840 -12.23999 -11.99796 -11.88922 -11.47191 -11.44297 -11.39061 -11.33082 -11.21001 -10.89141 -10.84491 -10.80071 -10.55040 -10.35400 -10.28842 -10.06787 -9.72872 -9.21149 -8.61889 -8.34746 -7.38773 -5.95322 -3.95217 2.81213 3.23065 3.45960 3.46483 3.55318 3.59972 4.05137 4.13092 4.30197 4.53155 4.76805 4.85121 4.97110 4.99399 5.09008 5.24812 5.28315 5.33835 5.40433 5.40969 5.54810 5.58871 5.62462 5.64272 5.75235 5.82387 5.88517 5.97515 6.01921 6.05710 6.19810 6.32181 6.49016 6.72211 6.79462 7.13351 7.27033 7.77655 7.92861 8.05768 8.16531 8.52744 8.57617 9.17576 9.70023 11.15125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.004805 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.059564 B = 5825.568864 C = 6579.911869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.549 5.549 4 C 0.198 3.802 5 C -0.505 4.505 6 H 0.071 0.929 7 C 0.057 3.943 8 N -0.904 5.904 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.316 3.684 14 N -0.617 5.617 15 C 0.075 3.925 16 C 0.092 3.908 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.126 4.126 21 O -0.324 6.324 22 C 0.641 3.359 23 O -0.504 6.504 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.053 0.947 29 H -0.009 1.009 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -14.716 15.897 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.276 5.276 4 C 0.074 3.926 5 C -0.544 4.544 6 H 0.089 0.911 7 C -0.144 4.144 8 N -0.544 5.544 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.106 3.894 14 N -0.367 5.367 15 C -0.049 4.049 16 C 0.054 3.946 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.164 4.164 21 O -0.235 6.235 22 C 0.394 3.606 23 O -0.387 6.387 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.679 -13.624 16.011 21.776 hybrid contribution 0.291 0.392 -0.700 0.853 sum 5.970 -13.232 15.311 21.098 Atomic orbital electron populations 1.21737 0.95306 0.99928 1.03097 1.22072 0.96411 0.90541 0.98625 1.61849 1.16241 1.14590 1.34962 1.19746 0.96714 0.94478 0.81698 1.21272 1.45915 0.90398 0.96818 0.91121 1.24941 0.95355 0.98987 0.95122 1.69944 1.48092 1.35348 1.00996 0.86551 0.78859 0.85202 0.76804 1.20141 1.21578 1.20178 1.21675 0.90578 1.02483 0.74664 1.48453 1.75306 1.04918 1.07972 1.22999 1.03370 0.89451 0.89106 1.23119 0.97649 0.78337 0.95508 1.22626 0.95144 1.02125 0.96280 1.22546 0.96580 1.01142 0.95825 1.22396 0.96015 0.99359 0.98175 1.22438 0.96533 1.00444 0.96948 1.87287 1.86646 1.23779 1.25835 1.18604 0.76568 0.85997 0.79407 1.91094 1.53605 1.18271 1.75702 0.93616 0.92537 0.91780 0.95696 0.92908 0.99147 0.94102 0.93005 0.87211 0.93332 0.89373 0.89598 0.89496 0.89939 0.90895 0.91006 0.91038 0.91129 0.89679 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.99 37.15 0.37 -2.00 16 2 C 0.05 0.88 5.53 -3.83 -0.02 0.86 16 3 N -0.55 -11.71 4.48 -239.99 -1.07 -12.78 16 4 C 0.20 5.10 4.54 -4.98 -0.02 5.07 16 5 C -0.51 -14.74 8.52 -34.44 -0.29 -15.03 16 6 H 0.07 2.18 7.81 -52.48 -0.41 1.77 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.90 23.13 29.54 -169.99 -5.02 18.11 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.32 6.05 5.59 -63.31 -0.35 5.70 16 14 N -0.62 -10.54 3.16 -182.52 -0.58 -11.11 16 15 C 0.07 0.87 6.54 -3.43 -0.02 0.85 16 16 C 0.09 1.05 1.35 -90.15 -0.12 0.93 16 17 C -0.12 -1.06 6.09 -25.38 -0.15 -1.22 16 18 C -0.12 -0.89 6.91 -24.60 -0.17 -1.06 16 19 C -0.12 -0.84 6.85 -24.92 -0.17 -1.01 16 20 C -0.13 -1.19 6.33 -25.91 -0.16 -1.35 16 21 O -0.32 -5.41 10.45 -38.59 -0.40 -5.81 16 22 C 0.64 12.85 8.86 53.77 0.48 13.33 16 23 O -0.50 -12.69 17.55 -19.10 -0.34 -13.03 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 27 H 0.02 0.42 8.05 -51.92 -0.42 0.00 16 28 H 0.05 0.76 5.63 -51.93 -0.29 0.47 16 29 H -0.01 -0.25 8.00 -51.92 -0.42 -0.66 16 30 H 0.04 1.11 6.25 -51.93 -0.32 0.79 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.11 2.46 7.03 -51.93 -0.37 2.10 16 33 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.09 0.93 5.41 -51.93 -0.28 0.65 16 35 H 0.09 0.78 7.40 -51.93 -0.38 0.40 16 36 H 0.09 0.56 7.53 -51.93 -0.39 0.17 16 37 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 43 H 0.08 0.69 7.15 -51.93 -0.37 0.32 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -34.26 340.26 -9.20 -43.46 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -6.91 Total: -4.17 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.74 Total: 6.63 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.91 Total: -50.32 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.74 Total: -18.84 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.26 -9.20 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494553985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.953 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds