Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46895 * 109.47543 * 2 1 4 4 C 1.46894 * 111.00159 * 287.85239 * 3 2 1 5 5 C 1.50701 * 109.47588 * 160.33548 * 4 3 2 6 6 H 1.08008 * 119.99518 * 4.69984 * 5 4 3 7 7 C 1.37877 * 120.00326 * 184.69803 * 5 4 3 8 8 N 1.31506 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99805 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47162 * 60.00371 * 9 7 5 11 11 H 1.48503 * 109.46659 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47184 * 300.00196 * 9 7 5 13 13 C 1.46901 * 111.00091 * 163.89534 * 3 2 1 14 14 N 1.46502 * 109.47304 * 278.95413 * 13 3 2 15 15 C 1.47319 * 125.58360 * 89.99837 * 14 13 3 16 16 C 1.53326 * 103.42867 * 179.73063 * 15 14 13 17 17 C 1.53487 * 110.80136 * 239.85466 * 16 15 14 18 18 C 1.55076 * 103.99363 * 215.46589 * 17 16 15 19 19 C 1.54952 * 102.85284 * 37.26138 * 18 17 16 20 20 C 1.53091 * 111.02776 * 120.56315 * 16 15 14 21 21 O 1.44846 * 104.84390 * 0.02562 * 16 15 14 22 22 C 1.34071 * 109.10611 * 359.97438 * 21 16 15 23 23 O 1.21512 * 123.10260 * 179.97438 * 22 21 16 24 24 H 1.08998 * 109.47707 * 179.17937 * 1 2 3 25 25 H 1.09009 * 109.47148 * 299.17937 * 1 2 3 26 26 H 1.09000 * 109.47105 * 59.17292 * 1 2 3 27 27 H 1.09007 * 109.47238 * 240.00119 * 2 1 3 28 28 H 1.08999 * 109.47330 * 120.00227 * 2 1 3 29 29 H 1.09009 * 109.47266 * 280.33345 * 4 3 2 30 30 H 1.09000 * 109.47709 * 40.33253 * 4 3 2 31 31 H 0.96997 * 120.00440 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47054 * 158.95860 * 13 3 2 33 33 H 1.08997 * 109.47484 * 38.95987 * 13 3 2 34 34 H 1.08999 * 110.63456 * 298.22072 * 15 14 13 35 35 H 1.09000 * 110.63185 * 61.24640 * 15 14 13 36 36 H 1.08999 * 110.52568 * 334.09213 * 17 16 15 37 37 H 1.08998 * 110.52252 * 96.84027 * 17 16 15 38 38 H 1.09005 * 110.73334 * 278.92131 * 18 17 16 39 39 H 1.08999 * 110.73759 * 155.60593 * 18 17 16 40 40 H 1.09000 * 110.48607 * 203.81106 * 19 18 17 41 41 H 1.09004 * 110.48058 * 81.17733 * 19 18 17 42 42 H 1.08993 * 110.09439 * 240.27840 * 20 16 15 43 43 H 1.09005 * 110.08717 * 1.86744 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7988 2.0214 -1.3053 5 6 1.8493 3.5194 -1.1488 6 1 2.1025 3.9543 -0.1931 7 6 1.5722 4.3348 -2.2256 8 7 1.2634 3.8054 -3.3891 9 14 1.6341 6.1917 -2.0312 10 1 2.9992 6.6005 -1.6136 11 1 1.2982 6.8363 -3.3262 12 1 0.6533 6.6144 -0.9993 13 6 3.4374 1.4420 0.3804 14 7 3.5548 1.3732 1.8391 15 6 3.6881 0.1382 2.6311 16 6 3.7777 0.6486 4.0742 17 6 5.1012 0.2202 4.7226 18 6 4.7231 -0.0531 6.2016 19 6 3.3168 -0.6931 6.0851 20 6 2.6427 0.0795 4.9296 21 8 3.6881 2.0901 3.9642 22 6 3.5641 2.4247 2.6719 23 8 3.4683 3.5744 2.2903 24 1 -0.3634 -1.0275 -0.0147 25 1 -0.3634 0.5011 0.8973 26 1 -0.3633 0.5266 -0.8825 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.5751 1.7025 -2.0011 30 1 0.8224 1.7292 -1.6916 31 1 1.0681 4.3790 -4.1465 32 1 3.8718 2.3763 0.0247 33 1 3.9678 0.6013 -0.0668 34 1 2.8119 -0.4972 2.5022 35 1 4.5963 -0.3981 2.3564 36 1 5.4818 -0.6862 4.2518 37 1 5.8358 1.0229 4.6581 38 1 4.6779 0.8780 6.7667 39 1 5.4273 -0.7488 6.6578 40 1 2.7582 -0.5577 7.0113 41 1 3.3987 -1.7519 5.8393 42 1 2.0312 0.8894 5.3272 43 1 2.0287 -0.5969 4.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494553985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -88.995053 kcal Electronic energy + Delta-G solvation = -23536.697770 eV Core-core repulsion = 20195.171445 eV Total energy + Delta-G solvation = -3341.526325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.82400 -39.31314 -38.66889 -36.97692 -35.81082 -34.65636 -31.82725 -30.43721 -29.84016 -28.99135 -26.59632 -25.52432 -24.35701 -22.83593 -21.95774 -21.68311 -20.84096 -18.63736 -18.17922 -17.73301 -17.62845 -16.84707 -16.59762 -16.28032 -15.87321 -15.65992 -15.33164 -14.99544 -14.79635 -14.29618 -14.24821 -14.06239 -13.56037 -13.46974 -13.24317 -12.93369 -12.81882 -12.73164 -12.57093 -12.37173 -12.14290 -12.09375 -12.05457 -11.98665 -11.64853 -11.61193 -11.49852 -11.35671 -11.29711 -10.61980 -9.99834 -9.08069 -8.21598 -6.28223 1.34758 1.37314 1.43619 1.47582 1.73756 2.39024 2.50111 3.09371 3.18042 3.30792 3.41742 3.48221 3.78424 4.08609 4.16730 4.27010 4.33693 4.39723 4.44461 4.52812 4.53308 4.62745 4.66022 4.77680 4.79942 4.90812 4.91884 4.98203 5.04614 5.14253 5.21708 5.22489 5.23948 5.29291 5.37813 5.41901 5.48363 5.70601 6.08471 6.29982 6.42017 6.63832 6.85998 7.06785 7.40611 8.87728 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.004805 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.059564 B = 5825.568864 C = 6579.911869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.568 5.568 4 C 0.217 3.783 5 C -0.520 4.520 6 H 0.044 0.956 7 C 0.013 3.987 8 N -0.927 5.927 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.279 1.279 13 C 0.321 3.679 14 N -0.612 5.612 15 C 0.072 3.928 16 C 0.080 3.920 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.128 4.128 21 O -0.337 6.337 22 C 0.637 3.363 23 O -0.574 6.574 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.090 0.910 29 H -0.024 1.024 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -17.875 17.209 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.295 5.295 4 C 0.091 3.909 5 C -0.559 4.559 6 H 0.062 0.938 7 C -0.185 4.185 8 N -0.567 5.567 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.205 1.205 13 C 0.111 3.889 14 N -0.360 5.360 15 C -0.049 4.049 16 C 0.043 3.957 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.166 4.166 21 O -0.248 6.248 22 C 0.391 3.609 23 O -0.462 6.462 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.108 0.892 29 H -0.007 1.007 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.298 -16.854 17.363 25.004 hybrid contribution 0.116 1.269 -1.005 1.623 sum 6.415 -15.585 16.358 23.487 Atomic orbital electron populations 1.21710 0.95145 1.01789 1.00979 1.22224 0.96545 0.88144 1.00728 1.61666 1.17959 1.17492 1.32412 1.19296 0.95019 0.92894 0.83668 1.21439 1.45971 0.92706 0.95771 0.93761 1.25618 0.95057 1.02902 0.94924 1.70008 1.48545 1.36729 1.01457 0.85709 0.78481 0.80717 0.77293 1.20338 1.19646 1.20469 1.21463 0.89617 1.01924 0.75943 1.48378 1.73944 1.06432 1.07223 1.23472 1.06166 0.87334 0.87940 1.23745 1.00357 0.75371 0.96244 1.22717 0.93094 1.02850 0.97211 1.22565 0.97522 1.01087 0.94816 1.22400 0.95215 1.00201 0.97242 1.22517 0.95973 1.00220 0.97864 1.87269 1.86155 1.27602 1.23756 1.18847 0.75884 0.85707 0.80486 1.91026 1.56714 1.21188 1.77269 0.89677 0.93482 0.95055 0.94826 0.89210 1.00661 0.95944 0.92589 0.91697 0.89300 0.87334 0.85819 0.86178 0.91445 0.92598 0.88585 0.90557 0.88606 0.91941 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.99 71.98 0.72 -3.66 16 2 C 0.05 1.61 5.53 86.30 0.48 2.09 16 3 N -0.57 -24.27 4.48 -913.18 -4.09 -28.35 16 4 C 0.22 11.53 4.54 85.56 0.39 11.92 16 5 C -0.52 -31.64 8.52 25.60 0.22 -31.42 16 6 H 0.04 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.81 5.46 84.66 0.46 1.27 16 8 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 9 Si 0.95 48.67 29.54 68.60 2.03 50.70 16 10 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 13 C 0.32 12.24 5.59 170.81 0.95 13.19 16 14 N -0.61 -20.36 3.16 -962.77 -3.04 -23.40 16 15 C 0.07 1.42 6.54 86.33 0.56 1.98 16 16 C 0.08 1.63 1.35 -10.49 -0.01 1.61 16 17 C -0.12 -1.69 6.09 31.47 0.19 -1.49 16 18 C -0.12 -1.38 6.91 31.97 0.22 -1.16 16 19 C -0.11 -1.13 6.85 31.77 0.22 -0.91 16 20 C -0.13 -2.07 6.33 31.13 0.20 -1.87 16 21 O -0.34 -11.36 10.45 -50.13 -0.52 -11.89 16 22 C 0.64 26.30 8.86 129.89 1.15 27.45 16 23 O -0.57 -30.85 17.55 19.63 0.34 -30.50 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.03 1.18 6.52 -2.39 -0.02 1.16 16 27 H 0.03 1.03 8.05 -2.38 -0.02 1.01 16 28 H 0.09 2.18 5.63 -2.39 -0.01 2.17 16 29 H -0.02 -1.34 8.00 -2.38 -0.02 -1.35 16 30 H 0.02 1.27 6.25 -2.39 -0.01 1.26 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.06 3.06 7.03 -2.38 -0.02 3.05 16 33 H 0.09 2.67 7.92 -2.39 -0.02 2.65 16 34 H 0.11 1.73 5.41 -2.39 -0.01 1.71 16 35 H 0.12 1.56 7.40 -2.39 -0.02 1.55 16 36 H 0.12 0.90 7.53 -2.39 -0.02 0.89 16 37 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.06 1.30 8.00 -2.39 -0.02 1.29 16 43 H 0.10 1.26 7.15 -2.38 -0.02 1.25 16 Total: -1.00 -80.59 340.26 1.74 -78.85 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 0.99 Total: 1.95 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.75 Total: 19.01 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -6.84 Total: -108.12 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.18 Total: -42.39 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -80.59 1.74 -78.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494553985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.142 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds