Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46512 * 2 1 4 4 C 1.53003 * 109.47359 * 240.00125 * 2 1 3 5 5 C 1.50694 * 109.47028 * 175.68362 * 4 2 1 6 6 H 1.07996 * 120.00504 * 354.99080 * 5 4 2 7 7 C 1.37882 * 119.99832 * 174.98808 * 5 4 2 8 8 N 1.31522 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00072 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46921 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46843 * 120.00055 * 9 7 5 12 12 H 1.48495 * 109.47440 * 239.99730 * 9 7 5 13 13 N 1.46898 * 109.47260 * 119.99707 * 2 1 3 14 14 C 1.47842 * 111.00046 * 298.83662 * 13 2 1 15 15 C 1.55119 * 104.90475 * 146.24087 * 14 13 2 16 16 C 1.55142 * 101.55619 * 323.15742 * 15 14 13 17 17 H 1.09007 * 110.70172 * 276.96913 * 16 15 14 18 18 C 1.53000 * 110.70480 * 153.91429 * 16 15 14 19 19 N 1.46495 * 109.47591 * 68.80047 * 18 16 15 20 20 C 1.47086 * 125.55973 * 90.00310 * 19 18 16 21 21 C 1.54091 * 103.77902 * 179.73604 * 20 19 18 22 22 O 1.45705 * 104.00589 * 359.97438 * 21 20 19 23 23 C 1.33770 * 109.47542 * 0.02562 * 22 21 20 24 24 O 1.21515 * 123.07014 * 179.97438 * 23 22 21 25 25 C 1.47445 * 110.99448 * 59.67740 * 13 2 1 26 26 H 1.08997 * 109.47291 * 306.15795 * 1 2 3 27 27 H 1.09001 * 109.47224 * 66.16577 * 1 2 3 28 28 H 1.08999 * 109.47116 * 186.16054 * 1 2 3 29 29 H 1.08998 * 109.46851 * 295.68897 * 4 2 1 30 30 H 1.09002 * 109.46681 * 55.68238 * 4 2 1 31 31 H 0.96995 * 119.99578 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.36819 * 265.18996 * 14 13 2 33 33 H 1.08993 * 110.37665 * 27.41847 * 14 13 2 34 34 H 1.09001 * 111.14416 * 205.04673 * 15 14 13 35 35 H 1.08998 * 110.92525 * 81.16483 * 15 14 13 36 36 H 1.09003 * 109.46838 * 308.79885 * 18 16 15 37 37 H 1.08999 * 109.47002 * 188.80346 * 18 16 15 38 38 H 1.09006 * 110.56519 * 298.30468 * 20 19 18 39 39 H 1.09003 * 110.56970 * 61.01296 * 20 19 18 40 40 H 1.09002 * 110.52538 * 118.62899 * 21 20 19 41 41 H 1.08995 * 110.51922 * 241.23011 * 21 20 19 42 42 H 1.09001 * 109.88770 * 117.33567 * 25 13 2 43 43 H 1.08993 * 109.89118 * 356.14521 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5432 -0.6292 -1.3038 6 1 4.0752 -0.0409 -0.5709 7 6 4.2394 -1.2964 -2.2894 8 7 3.5914 -2.0125 -3.1822 9 14 6.1026 -1.1818 -2.3575 10 1 6.5864 -0.3202 -1.2490 11 1 6.6874 -2.5399 -2.2197 12 1 6.5153 -0.5949 -3.6577 13 7 2.0197 -0.6924 1.1994 14 6 1.5687 -0.0060 2.4287 15 6 1.3499 -1.1417 3.4625 16 6 0.7785 -2.2718 2.5663 17 1 -0.2934 -2.1408 2.4174 18 6 1.0745 -3.6449 3.1728 19 7 0.2911 -3.8166 4.3987 20 6 -1.0606 -4.3915 4.4766 21 6 -1.3958 -4.3386 5.9797 22 8 -0.2100 -3.7464 6.5848 23 6 0.6915 -3.4813 5.6328 24 8 1.7745 -2.9818 5.8657 25 6 1.5405 -2.0863 1.2374 26 1 -0.3634 0.6063 0.8297 27 1 -0.3634 0.4153 -0.9400 28 1 -0.3633 -1.0217 0.1103 29 1 1.7412 -1.7687 -1.2115 30 1 1.6149 -0.2539 -2.1375 31 1 4.0812 -2.4821 -3.8753 32 1 2.3346 0.6856 2.7798 33 1 0.6343 0.5246 2.2461 34 1 0.6294 -0.8458 4.2250 35 1 2.2944 -1.4427 3.9158 36 1 2.1366 -3.7173 3.4072 37 1 0.8064 -4.4232 2.4583 38 1 -1.7666 -3.7885 3.9055 39 1 -1.0602 -5.4208 4.1181 40 1 -2.2690 -3.7101 6.1547 41 1 -1.5646 -5.3426 6.3690 42 1 2.3878 -2.7709 1.1971 43 1 0.8713 -2.2714 0.3972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496454234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = -61.948033 kcal Electronic energy + Delta-G solvation = -23219.275846 eV Core-core repulsion = 19878.922368 eV Total energy + Delta-G solvation = -3340.353478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69299 -39.16455 -37.25292 -36.01858 -33.97958 -32.25105 -30.64817 -29.29802 -28.23849 -27.30073 -25.73852 -23.91698 -23.19950 -21.58698 -21.17213 -20.08509 -18.54743 -17.56785 -17.40451 -16.99584 -16.15889 -15.99855 -15.02874 -14.79210 -14.45277 -14.30830 -14.15348 -13.73813 -13.49527 -13.42945 -13.08319 -12.68524 -12.37952 -12.19746 -11.73365 -11.67123 -11.44940 -11.30570 -10.98386 -10.89744 -10.85271 -10.78431 -10.56602 -10.43786 -10.35822 -10.29922 -9.90545 -9.12025 -9.04721 -8.97209 -8.24529 -7.41220 -5.87734 -3.85058 2.28760 2.64616 3.26306 3.40141 3.47706 3.54577 3.85040 4.30760 4.44477 4.58296 4.65997 4.80819 4.88321 4.92309 5.05299 5.12837 5.21569 5.48324 5.50013 5.58723 5.61464 5.76735 5.87325 5.87870 5.93522 6.03684 6.09401 6.13663 6.29350 6.41841 6.52578 6.55621 6.64391 6.70661 6.99558 7.20494 7.54567 7.70220 7.87288 7.93598 8.04409 8.14335 8.59596 9.21180 9.76870 11.24236 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.003988 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.484620 B = 7019.286048 C = 7308.999208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.498 5.498 14 C 0.035 3.965 15 C -0.114 4.114 16 C -0.131 4.131 17 H 0.070 0.930 18 C 0.156 3.844 19 N -0.627 5.627 20 C 0.064 3.936 21 C 0.042 3.958 22 O -0.333 6.333 23 C 0.640 3.360 24 O -0.514 6.514 25 C 0.059 3.941 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.014 0.986 31 H 0.256 0.744 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.094 -5.632 14.955 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.221 5.221 14 C -0.093 4.093 15 C -0.152 4.152 16 C -0.151 4.151 17 H 0.089 0.911 18 C 0.036 3.964 19 N -0.375 5.375 20 C -0.060 4.060 21 C -0.034 4.034 22 O -0.244 6.244 23 C 0.393 3.607 24 O -0.398 6.398 25 C -0.070 4.070 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.904 -5.417 15.133 20.612 hybrid contribution -0.172 -0.096 -0.302 0.360 sum -13.076 -5.513 14.831 20.527 Atomic orbital electron populations 1.22557 0.99937 1.00920 1.00877 1.22050 0.89877 0.98687 0.92344 0.91251 1.19238 0.96460 0.95476 0.89712 1.21214 0.91660 1.28577 1.11225 0.92118 1.24991 0.98045 0.95821 0.95981 1.69976 1.35072 1.32904 1.16667 0.86581 0.86446 0.77650 0.77597 1.19718 1.21319 1.21445 1.63729 1.56703 1.00736 1.00922 1.23149 0.98700 0.96707 0.90770 1.22727 1.01301 0.94733 0.96477 1.22928 1.00151 0.94829 0.97227 0.91119 1.21447 0.95853 0.97078 0.82032 1.48131 1.17398 1.64541 1.07402 1.22791 0.85380 1.01089 0.96750 1.24246 0.87318 1.00660 0.91127 1.87281 1.27626 1.76054 1.33407 1.18514 0.84029 0.78206 0.79941 1.91069 1.18877 1.46892 1.82949 1.22709 0.98071 0.92258 0.93940 0.93969 0.92534 0.93059 0.95894 0.96748 0.93436 0.91030 0.94069 0.92511 0.89991 0.88790 0.89529 0.89145 0.89017 0.87827 0.87777 0.90504 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.59 37.16 0.32 -2.78 16 2 C 0.08 1.61 2.33 -67.71 -0.16 1.45 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.71 4.28 -27.88 -0.12 0.59 16 5 C -0.49 -13.72 8.82 -34.44 -0.30 -14.03 16 6 H 0.06 1.73 7.75 -52.49 -0.41 1.32 16 7 C 0.05 1.46 5.46 -17.81 -0.10 1.36 16 8 N -0.91 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.50 -9.59 4.90 -223.16 -1.09 -10.69 16 14 C 0.03 0.56 6.49 -2.18 -0.01 0.55 16 15 C -0.11 -1.70 5.45 -24.48 -0.13 -1.83 16 16 C -0.13 -1.75 3.17 -88.80 -0.28 -2.03 16 17 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 18 C 0.16 1.81 5.33 -4.04 -0.02 1.79 16 19 N -0.63 -6.66 2.90 -178.85 -0.52 -7.18 16 20 C 0.06 0.38 7.69 -3.15 -0.02 0.36 16 21 C 0.04 0.23 8.23 37.73 0.31 0.54 16 22 O -0.33 -3.80 11.09 -37.83 -0.42 -4.22 16 23 C 0.64 8.72 8.40 53.71 0.45 9.17 16 24 O -0.51 -9.12 16.35 -19.12 -0.31 -9.43 16 25 C 0.06 1.01 5.04 -2.84 -0.01 0.99 16 26 H 0.04 0.63 6.29 -51.93 -0.33 0.31 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.83 6.15 -51.93 -0.32 0.51 16 29 H 0.02 0.60 6.41 -51.93 -0.33 0.27 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.64 5.70 -51.93 -0.30 0.34 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 36 H 0.09 1.25 7.84 -51.93 -0.41 0.85 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 1.42 7.82 -51.93 -0.41 1.01 16 43 H 0.06 1.14 4.82 -51.93 -0.25 0.89 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -33.99 336.65 -8.55 -42.55 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.91 Total: -3.07 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.09 Total: -3.87 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.87 Total: -44.23 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.73 Total: -13.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.99 -8.55 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496454234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.403 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds