Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47100 * 2 1 4 4 C 1.52991 * 109.47182 * 120.01108 * 2 1 3 5 5 C 1.50704 * 109.47138 * 183.11362 * 4 2 1 6 6 H 1.07991 * 120.00023 * 1.70641 * 5 4 2 7 7 C 1.37881 * 119.99884 * 181.70362 * 5 4 2 8 8 N 1.31513 * 120.00240 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46974 * 60.00215 * 9 7 5 11 11 H 1.48504 * 109.46900 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47318 * 299.99893 * 9 7 5 13 13 N 1.46911 * 109.46876 * 240.00794 * 2 1 3 14 14 C 1.47899 * 110.99708 * 296.87416 * 13 2 1 15 15 C 1.53994 * 107.05371 * 145.84384 * 14 13 2 16 16 C 1.54591 * 105.14489 * 358.77523 * 15 14 13 17 17 H 1.08999 * 110.72721 * 96.57627 * 16 15 14 18 18 C 1.52996 * 110.72424 * 219.68500 * 16 15 14 19 19 N 1.46503 * 109.47051 * 293.54244 * 18 16 15 20 20 C 1.47093 * 125.55801 * 269.99815 * 19 18 16 21 21 C 1.54094 * 103.77353 * 180.02562 * 20 19 18 22 22 O 1.45702 * 104.00907 * 359.77025 * 21 20 19 23 23 C 1.33776 * 109.47487 * 0.39580 * 22 21 20 24 24 O 1.21506 * 123.07031 * 179.82979 * 23 22 21 25 25 C 1.48538 * 110.99858 * 54.26922 * 13 2 1 26 26 H 1.08997 * 109.47404 * 172.53312 * 1 2 3 27 27 H 1.08997 * 109.46941 * 292.53272 * 1 2 3 28 28 H 1.09007 * 109.46999 * 52.52955 * 1 2 3 29 29 H 1.09004 * 109.47356 * 303.11075 * 4 2 1 30 30 H 1.08998 * 109.47714 * 63.11285 * 4 2 1 31 31 H 0.96994 * 120.00043 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.91971 * 26.48954 * 14 13 2 33 33 H 1.08996 * 110.08147 * 265.28866 * 14 13 2 34 34 H 1.09001 * 110.30719 * 239.85310 * 15 14 13 35 35 H 1.09005 * 110.39101 * 117.73795 * 15 14 13 36 36 H 1.09005 * 109.46943 * 173.54305 * 18 16 15 37 37 H 1.08996 * 109.47279 * 53.54380 * 18 16 15 38 38 H 1.09001 * 110.56737 * 298.59912 * 20 19 18 39 39 H 1.09001 * 110.56299 * 61.30400 * 20 19 18 40 40 H 1.09005 * 110.51849 * 118.63747 * 21 20 19 41 41 H 1.08998 * 110.51705 * 241.22906 * 21 20 19 42 42 H 1.09000 * 110.66547 * 81.84647 * 25 13 2 43 43 H 1.08996 * 110.66709 * 318.71415 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2490 5 6 3.5451 -0.6550 1.2882 6 1 4.0824 -0.1252 0.5157 7 6 4.2359 -1.2705 2.3104 8 7 3.5815 -1.9161 3.2510 9 14 6.1015 -1.1887 2.3586 10 1 6.5328 0.2300 2.4375 11 1 6.5986 -1.9237 3.5494 12 1 6.6561 -1.8070 1.1276 13 7 2.0197 -0.6924 -1.1996 14 6 1.6078 -2.1129 -1.1969 15 6 1.3520 -2.5118 -2.6621 16 6 1.6130 -1.2273 -3.4818 17 1 2.6262 -1.2253 -3.8836 18 6 0.5861 -1.0853 -4.6071 19 7 0.7794 -2.1605 -5.5832 20 6 1.6559 -2.0976 -6.7627 21 6 1.4793 -3.4777 -7.4251 22 8 0.5361 -4.1682 -6.5553 23 6 0.1861 -3.3615 -5.5473 24 8 -0.5946 -3.6895 -4.6759 25 6 1.4335 -0.1032 -2.4308 26 1 -0.3634 -1.0189 -0.1335 27 1 -0.3633 0.3938 0.9492 28 1 -0.3633 0.6252 -0.8157 29 1 1.6319 -0.2410 2.1383 30 1 1.7230 -1.7640 1.2215 31 1 4.0676 -2.3494 3.9698 32 1 0.6945 -2.2336 -0.6143 33 1 2.4006 -2.7316 -0.7765 34 1 0.3204 -2.8395 -2.7904 35 1 2.0395 -3.3010 -2.9664 36 1 0.7165 -0.1209 -5.0982 37 1 -0.4195 -1.1483 -4.1914 38 1 1.3333 -1.3049 -7.4377 39 1 2.6924 -1.9446 -6.4619 40 1 1.0699 -3.3698 -8.4296 41 1 2.4294 -4.0110 -7.4561 42 1 1.9809 0.7916 -2.7272 43 1 0.3771 0.1216 -2.2844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496454236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -60.895254 kcal Electronic energy + Delta-G solvation = -23152.552701 eV Core-core repulsion = 19812.244875 eV Total energy + Delta-G solvation = -3340.307826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72214 -39.10099 -37.29074 -36.08684 -34.01585 -32.25178 -30.54495 -29.10537 -28.66862 -27.20603 -25.57121 -23.93986 -23.17122 -21.68965 -21.33285 -19.95695 -18.44152 -17.55946 -17.39742 -17.02814 -16.15160 -15.66394 -15.30306 -14.94867 -14.41562 -14.33684 -14.22071 -13.84148 -13.59926 -13.20003 -13.05432 -12.74879 -12.38321 -12.30157 -11.72047 -11.64092 -11.42648 -11.15875 -10.97610 -10.90630 -10.81535 -10.77026 -10.63226 -10.47879 -10.39066 -10.10580 -9.85390 -9.13391 -9.01948 -8.99952 -8.23117 -7.49021 -5.86032 -3.84260 2.24375 2.62052 3.24308 3.42220 3.45914 3.49363 3.83656 4.29375 4.38458 4.57627 4.62417 4.81231 4.89669 4.94571 5.09039 5.13113 5.20978 5.38026 5.50850 5.59544 5.64645 5.67981 5.89653 5.91005 5.97591 6.06797 6.11331 6.20029 6.27518 6.39505 6.52181 6.57045 6.78923 6.87525 7.00110 7.17142 7.55222 7.69618 7.85942 7.90748 8.03257 8.15557 8.60548 9.21936 9.77391 11.25942 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.003937 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.504445 B = 7110.185789 C = 7537.355751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.486 5.486 14 C 0.042 3.958 15 C -0.127 4.127 16 C -0.110 4.110 17 H 0.081 0.919 18 C 0.155 3.845 19 N -0.627 5.627 20 C 0.064 3.936 21 C 0.041 3.959 22 O -0.332 6.332 23 C 0.641 3.359 24 O -0.515 6.515 25 C 0.033 3.967 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 1.976 -22.918 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.210 5.210 14 C -0.086 4.086 15 C -0.165 4.165 16 C -0.130 4.130 17 H 0.100 0.900 18 C 0.035 3.965 19 N -0.375 5.375 20 C -0.059 4.059 21 C -0.034 4.034 22 O -0.242 6.242 23 C 0.395 3.605 24 O -0.399 6.399 25 C -0.096 4.096 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.741 1.523 -22.315 22.864 hybrid contribution 0.406 0.023 0.055 0.410 sum -4.335 1.546 -22.260 22.731 Atomic orbital electron populations 1.22554 0.99800 1.01179 1.01021 1.22021 0.90101 0.98717 0.92364 0.91151 1.19217 0.96401 0.95472 0.89850 1.21145 0.91539 1.32306 1.08104 0.92133 1.25011 0.98013 0.95891 0.95943 1.69955 1.35246 1.35942 1.13294 0.86688 0.86424 0.77905 0.77093 1.20498 1.21663 1.20421 1.64985 1.53740 1.01515 1.00712 1.22776 1.00148 0.90998 0.94629 1.22562 1.02160 0.96489 0.95312 1.22520 0.99105 0.96753 0.94639 0.90024 1.21434 1.00330 0.87127 0.87643 1.48066 1.46482 1.15472 1.27492 1.22799 0.97086 0.98126 0.87924 1.24259 0.93760 0.91099 0.94272 1.87289 1.59763 1.39860 1.37281 1.18497 0.80665 0.79904 0.81451 1.91050 1.36917 1.76800 1.35120 1.23270 0.98332 0.96731 0.91225 0.92751 0.92433 0.93785 0.96505 0.96146 0.93266 0.93610 0.90048 0.90568 0.92377 0.89725 0.89412 0.89134 0.88894 0.87786 0.87675 0.90735 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.35 37.16 0.31 -2.97 16 2 C 0.08 1.58 2.48 -67.71 -0.17 1.41 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.72 4.23 -27.89 -0.12 0.60 16 5 C -0.49 -13.99 8.79 -34.44 -0.30 -14.29 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.49 -9.39 5.01 -222.50 -1.12 -10.50 16 14 C 0.04 0.82 5.07 -2.76 -0.01 0.80 16 15 C -0.13 -2.04 5.75 -25.38 -0.15 -2.18 16 16 C -0.11 -1.42 3.31 -88.76 -0.29 -1.72 16 17 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 18 C 0.16 1.58 5.38 -4.04 -0.02 1.56 16 19 N -0.63 -6.33 2.88 -178.84 -0.51 -6.84 16 20 C 0.06 0.36 7.70 -3.15 -0.02 0.33 16 21 C 0.04 0.22 8.23 37.73 0.31 0.53 16 22 O -0.33 -3.81 11.09 -37.84 -0.42 -4.23 16 23 C 0.64 8.65 8.32 53.71 0.45 9.10 16 24 O -0.51 -9.07 15.64 -19.11 -0.30 -9.37 16 25 C 0.03 0.48 5.79 -1.89 -0.01 0.47 16 26 H 0.05 0.97 5.95 -51.93 -0.31 0.66 16 27 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.04 0.66 6.39 -51.93 -0.33 0.33 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.56 6.76 -51.93 -0.35 0.21 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.05 0.91 5.28 -51.93 -0.27 0.64 16 33 H 0.08 1.79 8.13 -51.93 -0.42 1.37 16 34 H 0.08 1.29 5.95 -51.93 -0.31 0.99 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.65 5.52 -51.93 -0.29 0.37 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -34.73 335.07 -8.60 -43.32 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.88 Total: -2.84 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.13 Total: -4.97 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.89 Total: -44.25 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.72 Total: -13.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.73 -8.60 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496454236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.574 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds