Wall clock time and date at job start Tue Mar 31 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47317 * 119.99582 * 2 1 3 5 5 C 1.50696 * 109.47507 * 294.47773 * 4 2 1 6 6 H 1.08006 * 119.99916 * 2.88715 * 5 4 2 7 7 C 1.37878 * 120.00093 * 182.88574 * 5 4 2 8 8 N 1.31514 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47263 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47179 * 120.00210 * 9 7 5 12 12 H 1.48498 * 109.47456 * 240.00287 * 9 7 5 13 13 N 1.46900 * 109.47355 * 240.00287 * 2 1 3 14 14 C 1.48559 * 110.99934 * 177.67611 * 13 2 1 15 15 C 1.54379 * 104.59339 * 200.95641 * 14 13 2 16 16 C 1.54268 * 105.05933 * 23.85381 * 15 14 13 17 17 H 1.08997 * 110.32221 * 241.00176 * 16 15 14 18 18 C 1.53003 * 110.32294 * 118.89718 * 16 15 14 19 19 N 1.46498 * 109.47154 * 67.82694 * 18 16 15 20 20 C 1.47088 * 125.56046 * 269.99833 * 19 18 16 21 21 C 1.54089 * 103.77638 * 180.02562 * 20 19 18 22 22 O 1.45699 * 104.00754 * 359.80325 * 21 20 19 23 23 C 1.33767 * 109.47683 * 0.33947 * 22 21 20 24 24 O 1.21516 * 123.07274 * 179.89932 * 23 22 21 25 25 C 1.48721 * 111.01584 * 62.16575 * 13 2 1 26 26 H 1.08994 * 109.47290 * 59.99865 * 1 2 3 27 27 H 1.09003 * 109.46623 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46865 * 300.00019 * 1 2 3 29 29 H 1.09009 * 109.46657 * 54.48031 * 4 2 1 30 30 H 1.09001 * 109.47240 * 174.47450 * 4 2 1 31 31 H 0.97002 * 119.99354 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.41053 * 82.18133 * 14 13 2 33 33 H 1.08996 * 110.51316 * 319.78350 * 14 13 2 34 34 H 1.09006 * 110.32704 * 264.96001 * 15 14 13 35 35 H 1.08998 * 110.41340 * 142.79391 * 15 14 13 36 36 H 1.09007 * 109.46835 * 307.82745 * 18 16 15 37 37 H 1.09002 * 109.46666 * 187.82911 * 18 16 15 38 38 H 1.09003 * 110.56773 * 298.59577 * 20 19 18 39 39 H 1.09004 * 110.56656 * 61.30259 * 20 19 18 40 40 H 1.09007 * 110.51591 * 118.63421 * 21 20 19 41 41 H 1.09001 * 110.52341 * 241.22694 * 21 20 19 42 42 H 1.08995 * 110.38726 * 40.24527 * 25 13 2 43 43 H 1.08999 * 110.50419 * 277.74993 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6525 0.0638 2.4759 6 1 1.0580 0.9601 2.3779 7 6 2.0570 -0.3623 3.7233 8 7 2.7813 -1.4535 3.8425 9 14 1.5772 0.6111 5.2437 10 1 0.7677 1.7895 4.8420 11 1 0.7788 -0.2509 6.1518 12 1 2.8031 1.0683 5.9460 13 7 2.0197 -0.6924 -1.1995 14 6 3.5037 -0.6637 -1.2622 15 6 3.8351 -0.9122 -2.7494 16 6 2.5750 -0.4676 -3.5204 17 1 2.1534 -1.3072 -4.0729 18 6 2.9133 0.6793 -4.4750 19 7 3.7837 0.1841 -5.5443 20 6 5.2540 0.1607 -5.5085 21 6 5.6444 -0.4493 -6.8686 22 8 4.3666 -0.7074 -7.5192 23 6 3.3703 -0.3208 -6.7147 24 8 2.1974 -0.4229 -7.0155 25 6 1.5864 0.0114 -2.4359 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5982 -1.7164 1.3001 30 1 3.1255 -0.8076 1.2012 31 1 3.0661 -1.7529 4.7201 32 1 3.9258 -1.4541 -0.6415 33 1 3.8806 0.3090 -0.9461 34 1 4.0308 -1.9705 -2.9220 35 1 4.6948 -0.3145 -3.0523 36 1 3.4255 1.4697 -3.9262 37 1 1.9944 1.0744 -4.9082 38 1 5.6509 1.1715 -5.4142 39 1 5.6072 -0.4660 -4.6896 40 1 6.2362 0.2586 -7.4490 41 1 6.1947 -1.3795 -6.7264 42 1 1.6603 1.0908 -2.3041 43 1 0.5672 -0.2716 -2.6990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496454238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:27 Heat of formation + Delta-G solvation = -69.828475 kcal Electronic energy + Delta-G solvation = -22703.808802 eV Core-core repulsion = 19363.113603 eV Total energy + Delta-G solvation = -3340.695200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78693 -39.06499 -37.35374 -36.14104 -34.22118 -32.34547 -30.82016 -29.31816 -28.92593 -26.71091 -25.89316 -23.99305 -23.27062 -21.67738 -21.35745 -19.82377 -19.06078 -17.63982 -17.41729 -16.99759 -16.60154 -15.85510 -15.14339 -14.96311 -14.54559 -14.39239 -14.31335 -13.83690 -13.64824 -13.37109 -12.90938 -12.73911 -12.46902 -12.34895 -12.08368 -11.93568 -11.43532 -11.23566 -10.98793 -10.91525 -10.86955 -10.78084 -10.75834 -10.66095 -10.45650 -10.35866 -9.91333 -9.24152 -9.13793 -9.05362 -8.35923 -7.87750 -6.01283 -4.02924 2.18832 2.54103 3.18964 3.29203 3.37102 3.40494 3.79977 4.23437 4.32985 4.38827 4.51184 4.75724 4.79304 4.89609 4.94086 5.03729 5.11802 5.30850 5.34741 5.40705 5.50470 5.60073 5.79571 5.85663 5.95695 5.98976 6.04090 6.16551 6.28008 6.32284 6.36610 6.42336 6.63984 6.88348 7.09549 7.10508 7.42324 7.51180 7.73840 7.81972 7.85789 8.06194 8.42480 9.03721 9.60490 11.10153 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038453 B = 0.003144 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.991339 B = 8903.475978 C = 9296.963906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 H 0.029 0.971 4 C 0.033 3.967 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.505 5.505 14 C 0.038 3.962 15 C -0.118 4.118 16 C -0.112 4.112 17 H 0.082 0.918 18 C 0.154 3.846 19 N -0.626 5.626 20 C 0.060 3.940 21 C 0.042 3.958 22 O -0.331 6.331 23 C 0.641 3.359 24 O -0.521 6.521 25 C 0.041 3.959 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.259 0.741 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.040 0.960 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 4.383 -18.804 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 H 0.047 0.953 4 C -0.004 4.004 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.230 5.230 14 C -0.090 4.090 15 C -0.156 4.156 16 C -0.132 4.132 17 H 0.101 0.899 18 C 0.033 3.967 19 N -0.373 5.373 20 C -0.064 4.064 21 C -0.033 4.033 22 O -0.241 6.241 23 C 0.395 3.605 24 O -0.406 6.406 25 C -0.088 4.088 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.976 3.587 -19.012 20.567 hybrid contribution 0.336 1.340 1.139 1.791 sum 7.311 4.927 -17.873 19.930 Atomic orbital electron populations 1.21725 0.95266 1.01626 1.00130 1.22040 0.95197 0.95294 0.90707 0.95293 1.19121 0.96333 0.95811 0.89125 1.21246 1.32986 1.10012 0.91311 0.92623 1.24993 0.95233 0.95111 0.99034 1.69982 1.36901 1.22877 1.23529 0.86572 0.78241 0.80130 0.83271 1.19780 1.21015 1.21097 1.65513 1.06763 1.49138 1.01573 1.23012 0.89810 1.00962 0.95187 1.22451 0.96382 1.01393 0.95387 1.22381 0.96695 0.98280 0.95847 0.89922 1.21498 0.93608 0.95634 0.85912 1.48072 1.06723 1.65293 1.17234 1.22929 0.81371 1.03431 0.98638 1.24278 0.84238 1.02962 0.91860 1.87278 1.16589 1.78031 1.42241 1.18509 0.85245 0.77039 0.79681 1.91057 1.12953 1.59602 1.76980 1.23048 0.98772 0.96464 0.90494 0.95005 0.92674 0.91603 0.96006 0.96324 0.93097 0.89790 0.94103 0.91377 0.91984 0.89638 0.89235 0.89009 0.88517 0.87704 0.87586 0.94152 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.92 37.16 0.33 -2.15 16 2 C 0.08 1.54 1.86 -67.71 -0.13 1.42 16 3 H 0.03 0.61 7.98 -51.93 -0.41 0.19 16 4 C 0.03 0.85 4.47 -27.88 -0.12 0.73 16 5 C -0.52 -14.25 8.46 -34.44 -0.29 -14.54 16 6 H 0.06 1.49 6.99 -52.48 -0.37 1.13 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -8.97 5.20 -221.89 -1.15 -10.13 16 14 C 0.04 0.61 5.44 -2.18 -0.01 0.60 16 15 C -0.12 -1.41 6.21 -25.34 -0.16 -1.56 16 16 C -0.11 -1.36 3.30 -89.23 -0.29 -1.65 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 18 C 0.15 1.54 5.13 -4.04 -0.02 1.52 16 19 N -0.63 -6.10 2.84 -178.84 -0.51 -6.61 16 20 C 0.06 0.33 7.07 -3.15 -0.02 0.31 16 21 C 0.04 0.21 8.23 37.73 0.31 0.52 16 22 O -0.33 -3.58 11.09 -37.82 -0.42 -4.00 16 23 C 0.64 8.28 8.85 53.71 0.48 8.76 16 24 O -0.52 -8.91 17.54 -19.12 -0.34 -9.25 16 25 C 0.04 0.59 4.99 -2.09 -0.01 0.58 16 26 H 0.03 0.52 7.00 -51.93 -0.36 0.15 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.32 6.93 -51.93 -0.36 0.96 16 29 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.02 0.50 6.73 -51.93 -0.35 0.15 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.08 1.48 7.55 -51.93 -0.39 1.09 16 33 H 0.04 0.66 7.94 -51.93 -0.41 0.24 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.58 5.58 -51.93 -0.29 0.29 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.47 6.41 -51.93 -0.33 0.14 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16 43 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -33.76 339.04 -8.64 -42.40 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -7.01 Total: -4.15 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.04 Total: -3.95 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.93 Total: -42.52 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.75 Total: -13.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.76 -8.64 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496454238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.428 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds