Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47130 * 2 1 4 4 C 1.53001 * 109.46820 * 239.99816 * 2 1 3 5 5 C 1.50695 * 109.47184 * 61.86186 * 4 2 1 6 6 H 1.07998 * 120.00405 * 5.11551 * 5 4 2 7 7 C 1.37882 * 119.99877 * 185.11397 * 5 4 2 8 8 N 1.31512 * 119.99581 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99947 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46596 * 90.00286 * 9 7 5 11 11 H 1.48501 * 109.46873 * 209.99794 * 9 7 5 12 12 H 1.48491 * 109.47159 * 330.00189 * 9 7 5 13 13 N 1.46901 * 109.47253 * 120.00030 * 2 1 3 14 14 C 1.47905 * 111.00100 * 59.87424 * 13 2 1 15 15 C 1.53996 * 107.05566 * 145.84557 * 14 13 2 16 16 C 1.54596 * 105.14068 * 358.77898 * 15 14 13 17 17 H 1.08989 * 110.72680 * 96.57915 * 16 15 14 18 18 C 1.53004 * 110.72317 * 219.68713 * 16 15 14 19 19 N 1.46506 * 109.46826 * 293.54339 * 18 16 15 20 20 C 1.47089 * 125.55981 * 270.00094 * 19 18 16 21 21 C 1.54090 * 103.77695 * 180.02562 * 20 19 18 22 22 O 1.45699 * 104.00534 * 359.76721 * 21 20 19 23 23 C 1.33768 * 109.47801 * 0.39513 * 22 21 20 24 24 O 1.21519 * 123.07138 * 179.83440 * 23 22 21 25 25 C 1.48530 * 111.00210 * 177.27305 * 13 2 1 26 26 H 1.09006 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47277 * 300.00236 * 1 2 3 28 28 H 1.09003 * 109.47057 * 60.00109 * 1 2 3 29 29 H 1.09001 * 109.46771 * 181.86379 * 4 2 1 30 30 H 1.09003 * 109.47243 * 301.85626 * 4 2 1 31 31 H 0.97006 * 119.99471 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.91387 * 26.49602 * 14 13 2 33 33 H 1.08996 * 109.91758 * 265.19718 * 14 13 2 34 34 H 1.09005 * 110.31022 * 239.86168 * 15 14 13 35 35 H 1.08992 * 110.39174 * 117.73580 * 15 14 13 36 36 H 1.08999 * 109.47089 * 173.54992 * 18 16 15 37 37 H 1.08994 * 109.47214 * 53.54224 * 18 16 15 38 38 H 1.08999 * 110.56752 * 298.59678 * 20 19 18 39 39 H 1.09005 * 110.56645 * 61.30302 * 20 19 18 40 40 H 1.08994 * 110.52032 * 118.63434 * 21 20 19 41 41 H 1.09003 * 110.51827 * 241.23349 * 21 20 19 42 42 H 1.09004 * 110.66468 * 81.84385 * 25 13 2 43 43 H 1.09003 * 110.66691 * 318.71643 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5756 0.0152 -2.4793 6 1 1.0478 0.9522 -2.3806 7 6 1.8247 -0.5072 -3.7307 8 7 1.4190 0.1353 -4.8041 9 14 2.7384 -2.1276 -3.9015 10 1 1.7635 -3.2479 -3.9005 11 1 3.4994 -2.1347 -5.1766 12 1 3.6782 -2.2882 -2.7631 13 7 2.0197 -0.6925 1.1994 14 6 1.5430 -2.0922 1.2351 15 6 2.6572 -2.9323 1.8865 16 6 3.7964 -1.9306 2.1845 17 1 3.7470 -1.5865 3.2175 18 6 5.1602 -2.5582 1.8896 19 7 5.4089 -3.6514 2.8327 20 6 6.0718 -3.5199 4.1391 21 6 6.0678 -4.9556 4.6988 22 8 5.4050 -5.7362 3.6624 23 6 5.0700 -4.9343 2.6456 24 8 4.5053 -5.3319 1.6457 25 6 3.5030 -0.7697 1.2012 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1294 -0.7503 -1.2327 30 1 1.6496 -1.7389 -1.2660 31 1 1.5940 -0.2325 -5.6845 32 1 1.3552 -2.4464 0.2216 33 1 0.6319 -2.1591 1.8296 34 1 3.0019 -3.7031 1.1971 35 1 2.3000 -3.3851 2.8113 36 1 5.9385 -1.8026 1.9959 37 1 5.1684 -2.9477 0.8716 38 1 7.0932 -3.1599 4.0158 39 1 5.5073 -2.8515 4.7894 40 1 7.0875 -5.3078 4.8542 41 1 5.5027 -5.0012 5.6298 42 1 3.9362 0.1618 1.5656 43 1 3.8771 -1.0054 0.2049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496454240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = -60.457457 kcal Electronic energy + Delta-G solvation = -23321.664717 eV Core-core repulsion = 19981.375875 eV Total energy + Delta-G solvation = -3340.288842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74095 -39.21431 -37.30542 -36.13417 -34.16225 -32.32251 -30.64959 -29.24773 -28.91167 -27.56688 -25.46434 -23.95675 -23.11183 -21.78794 -21.42059 -19.96772 -18.47700 -17.58352 -17.47918 -17.07646 -16.93536 -15.57844 -15.14148 -14.97967 -14.38792 -14.31770 -14.20696 -13.78857 -13.70411 -13.49251 -13.04381 -12.87042 -12.50969 -12.35037 -12.20375 -11.67281 -11.60340 -11.06626 -11.00705 -10.92527 -10.86185 -10.82015 -10.67271 -10.57838 -10.31753 -10.02373 -9.82620 -9.68811 -9.17533 -9.06317 -8.51787 -7.67778 -6.04795 -4.02003 2.22951 2.60723 3.22434 3.31431 3.39423 3.43330 3.81137 4.26276 4.36702 4.45171 4.51219 4.75382 4.86563 4.89600 4.98547 5.07847 5.14708 5.27635 5.39271 5.52748 5.59270 5.76639 5.83662 5.89563 6.04640 6.10583 6.15818 6.22814 6.31190 6.34215 6.39311 6.51258 6.71417 6.78460 7.00904 7.16023 7.17482 7.20243 7.57197 7.58335 7.86939 7.90328 8.53214 9.00005 9.58217 11.08258 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.004627 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.872455 B = 6049.764890 C = 6763.111143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.080 3.920 3 H 0.075 0.925 4 C -0.041 4.041 5 C -0.513 4.513 6 H 0.075 0.925 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.515 5.515 14 C 0.029 3.971 15 C -0.126 4.126 16 C -0.109 4.109 17 H 0.080 0.920 18 C 0.152 3.848 19 N -0.627 5.627 20 C 0.065 3.935 21 C 0.041 3.959 22 O -0.332 6.332 23 C 0.640 3.360 24 O -0.513 6.513 25 C 0.035 3.965 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.875 -6.149 21.726 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 H 0.094 0.906 4 C -0.080 4.080 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.239 5.239 14 C -0.099 4.099 15 C -0.165 4.165 16 C -0.129 4.129 17 H 0.098 0.902 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.059 4.059 21 C -0.034 4.034 22 O -0.242 6.242 23 C 0.393 3.607 24 O -0.396 6.396 25 C -0.094 4.094 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.325 -6.303 21.464 24.638 hybrid contribution 0.826 -1.154 -0.819 1.639 sum 11.151 -7.457 20.645 24.621 Atomic orbital electron populations 1.21702 0.94758 1.01158 1.01039 1.21743 0.95570 0.97870 0.87585 0.90635 1.20210 0.96259 0.96483 0.95007 1.21022 1.36902 1.08375 0.88815 0.90703 1.25007 0.95259 0.97046 0.95953 1.69909 1.47062 1.39217 0.97952 0.86852 0.80642 0.84673 0.77537 1.20286 1.21382 1.19240 1.65117 1.05862 1.13702 1.39169 1.22891 0.97671 0.88735 1.00589 1.22527 0.95194 0.97895 1.00836 1.22511 0.93873 0.96107 1.00388 0.90159 1.21464 0.96953 0.86442 0.91980 1.48077 1.61415 1.08009 1.20017 1.22790 0.99868 0.97695 0.85548 1.24251 0.99616 0.88605 0.90918 1.87289 1.72572 1.35206 1.29145 1.18518 0.78575 0.80544 0.83030 1.91076 1.44499 1.77650 1.26418 1.23255 0.90495 0.97157 0.98484 0.93703 0.94092 0.90976 0.96496 0.96549 0.92759 0.92312 0.91311 0.90192 0.92409 0.89471 0.89110 0.89090 0.89003 0.87772 0.87749 0.90444 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.86 37.16 0.33 -2.17 16 2 C 0.08 1.61 2.54 -67.71 -0.17 1.44 16 3 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 4 C -0.04 -0.98 2.91 -27.88 -0.08 -1.06 16 5 C -0.51 -14.41 8.83 -34.44 -0.30 -14.71 16 6 H 0.07 2.24 7.29 -52.49 -0.38 1.86 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 9 Si 0.88 22.36 27.37 -169.99 -4.65 17.71 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.63 6.69 56.52 0.38 -6.25 16 13 N -0.52 -8.96 5.33 -222.50 -1.18 -10.14 16 14 C 0.03 0.50 5.17 -2.75 -0.01 0.48 16 15 C -0.13 -1.92 5.75 -25.37 -0.15 -2.07 16 16 C -0.11 -1.37 3.31 -88.76 -0.29 -1.67 16 17 H 0.08 0.91 8.14 -51.94 -0.42 0.49 16 18 C 0.15 1.69 5.38 -4.04 -0.02 1.67 16 19 N -0.63 -6.51 2.88 -178.84 -0.51 -7.03 16 20 C 0.06 0.35 7.70 -3.15 -0.02 0.32 16 21 C 0.04 0.22 8.23 37.73 0.31 0.53 16 22 O -0.33 -3.80 11.09 -37.82 -0.42 -4.22 16 23 C 0.64 8.84 8.32 53.71 0.45 9.29 16 24 O -0.51 -9.41 15.64 -19.12 -0.30 -9.71 16 25 C 0.03 0.53 5.82 -1.90 -0.01 0.52 16 26 H 0.04 0.85 7.05 -51.93 -0.37 0.49 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.52 6.84 -51.93 -0.36 1.17 16 29 H 0.02 0.41 5.33 -51.93 -0.28 0.13 16 30 H 0.02 0.40 5.21 -51.93 -0.27 0.13 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.06 1.15 5.32 -51.93 -0.28 0.87 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.23 7.86 -51.93 -0.41 0.82 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.08 5.45 -51.93 -0.28 0.80 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -34.53 329.61 -8.14 -42.68 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.74 Total: -1.60 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.08 Total: -5.53 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.93 Total: -44.29 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.72 Total: -13.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.65 Total: 17.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.53 -8.14 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496454240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds