Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47029 * 2 1 4 4 C 1.52997 * 109.47427 * 120.00191 * 2 1 3 5 5 C 1.50697 * 109.47090 * 294.99544 * 4 2 1 6 6 N 1.34781 * 120.00228 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99742 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47124 * 240.00216 * 2 1 3 9 9 O 1.21286 * 120.00007 * 263.07195 * 8 2 1 10 10 N 1.34781 * 120.00023 * 83.06914 * 8 2 1 11 11 C 1.46923 * 120.63039 * 4.66441 * 10 8 2 12 12 C 1.52751 * 109.01136 * 233.58262 * 11 10 8 13 13 C 1.53041 * 109.38575 * 305.59434 * 12 11 10 14 14 C 1.53004 * 109.46086 * 181.25945 * 13 12 11 15 15 C 1.50704 * 109.47092 * 64.93010 * 14 13 12 16 16 H 1.07993 * 120.00236 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99596 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99921 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00564 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47350 * 90.00220 * 19 17 15 21 21 H 1.48501 * 109.47522 * 210.00497 * 19 17 15 22 22 H 1.48511 * 109.46985 * 330.00738 * 19 17 15 23 23 C 1.53038 * 109.54174 * 61.23729 * 13 12 11 24 24 C 1.46927 * 120.62753 * 184.94990 * 10 8 2 25 25 H 1.09006 * 109.47071 * 186.29268 * 1 2 3 26 26 H 1.09004 * 109.46849 * 306.28711 * 1 2 3 27 27 H 1.08998 * 109.47607 * 66.29141 * 1 2 3 28 28 H 1.08999 * 109.47510 * 55.00038 * 4 2 1 29 29 H 1.08998 * 109.47281 * 174.99881 * 4 2 1 30 30 H 0.96999 * 119.99660 * 0.02562 * 6 5 4 31 31 H 0.96998 * 120.00026 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.58491 * 353.42476 * 11 10 8 33 33 H 1.09000 * 109.57997 * 113.84329 * 11 10 8 34 34 H 1.08994 * 109.56837 * 185.55290 * 12 11 10 35 35 H 1.09010 * 109.36045 * 65.50333 * 12 11 10 36 36 H 1.09002 * 109.45420 * 301.21635 * 13 12 11 37 37 H 1.09001 * 109.46960 * 184.92777 * 14 13 12 38 38 H 1.09002 * 109.47093 * 304.92958 * 14 13 12 39 39 H 0.97000 * 120.00243 * 179.97438 * 18 17 15 40 40 H 1.08988 * 109.49969 * 178.68650 * 23 13 12 41 41 H 1.09005 * 109.52379 * 58.59951 * 23 13 12 42 42 H 1.09006 * 109.58234 * 246.15443 * 24 10 8 43 43 H 1.08998 * 109.59111 * 6.43969 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6415 0.0570 2.4765 6 7 1.9846 -0.3919 3.7001 7 8 1.0111 1.0869 2.3632 8 6 2.0323 -0.7104 -1.2305 9 8 2.3539 -1.8781 -1.1678 10 7 2.1241 -0.0480 -2.4007 11 6 1.8359 1.3910 -2.4711 12 6 0.7891 1.6363 -3.5560 13 6 1.2710 1.0263 -4.8742 14 6 0.2380 1.2983 -5.9696 15 6 0.1528 2.7816 -6.2225 16 1 0.7729 3.4621 -5.6581 17 6 -0.7178 3.2697 -7.1737 18 7 -0.7919 4.5641 -7.3948 19 14 -1.7910 2.0928 -8.1494 20 1 -3.0773 1.8885 -7.4360 21 1 -2.0563 2.6638 -9.4944 22 1 -1.0928 0.7900 -8.2937 23 6 1.4484 -0.4843 -4.7046 24 6 2.5083 -0.7526 -3.6315 25 1 -0.3633 -1.0215 0.1126 26 1 -0.3633 0.6082 0.8284 27 1 -0.3634 0.4132 -0.9409 28 1 1.6055 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 2.4885 -1.2158 3.7907 31 1 1.7284 0.1093 4.4901 32 1 1.4520 1.7341 -1.5103 33 1 2.7480 1.9345 -2.7176 34 1 0.6405 2.7085 -3.6841 35 1 -0.1518 1.1708 -3.2622 36 1 2.2241 1.4746 -5.1547 37 1 0.5379 0.7902 -6.8861 38 1 -0.7361 0.9276 -5.6506 39 1 -1.4041 4.9075 -8.0642 40 1 1.7692 -0.9214 -5.6500 41 1 0.5015 -0.9304 -4.4002 42 1 3.4763 -0.3873 -3.9746 43 1 2.5702 -1.8230 -3.4357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518775785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = -99.882510 kcal Electronic energy + Delta-G solvation = -22829.709232 eV Core-core repulsion = 19487.710792 eV Total energy + Delta-G solvation = -3341.998440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56229 -39.49275 -37.48029 -34.44642 -33.97857 -33.92404 -32.10985 -30.78771 -28.65576 -28.00172 -25.21046 -23.66300 -22.80334 -21.50187 -20.58168 -19.60531 -18.46801 -17.88995 -17.28490 -16.74486 -16.45488 -15.62735 -15.54402 -15.05668 -14.38712 -14.32640 -13.93759 -13.72492 -13.42164 -13.23404 -13.16809 -12.77620 -12.47697 -12.28735 -12.17438 -11.99126 -11.45852 -11.34966 -11.20223 -11.12397 -10.84733 -10.65333 -10.32540 -10.18109 -9.99001 -9.87755 -9.76954 -9.53405 -9.41802 -9.05926 -8.53674 -8.41233 -6.04467 -4.01905 2.37652 2.67390 2.96789 3.30555 3.38417 3.39642 3.41859 4.35829 4.45260 4.61159 4.76856 4.86844 5.07393 5.27651 5.29837 5.31738 5.41177 5.46239 5.47641 5.49473 5.63162 5.76129 5.81367 5.92173 5.94218 6.02682 6.19448 6.27800 6.32212 6.43241 6.48670 6.61252 6.79930 6.85804 6.97556 6.99534 7.26485 7.42282 7.54261 7.79750 7.97904 8.23440 8.53315 9.00120 9.58718 11.08747 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.003649 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.803559 B = 7671.674430 C = 8217.233345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.125 4.125 5 C 0.518 3.482 6 N -0.859 5.859 7 O -0.537 6.537 8 C 0.519 3.481 9 O -0.556 6.556 10 N -0.602 5.602 11 C 0.099 3.901 12 C -0.121 4.121 13 C -0.072 4.072 14 C -0.009 4.009 15 C -0.516 4.516 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.132 4.132 24 C 0.112 3.888 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.402 0.598 31 H 0.400 0.600 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 -11.637 18.728 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.120 0.880 4 C -0.165 4.165 5 C 0.303 3.697 6 N -0.422 5.422 7 O -0.414 6.414 8 C 0.308 3.692 9 O -0.435 6.435 10 N -0.335 5.335 11 C -0.024 4.024 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.046 4.046 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.170 4.170 24 C -0.010 4.010 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.230 0.770 31 H 0.231 0.769 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.651 -11.468 18.353 22.640 hybrid contribution -0.493 -0.626 -0.300 0.851 sum 6.158 -12.094 18.053 22.585 Atomic orbital electron populations 1.21880 0.91839 1.02706 1.04109 1.21031 0.98740 1.00798 0.91148 0.87962 1.21490 1.03356 1.00460 0.91194 1.20701 0.78386 0.85345 0.85247 1.43895 1.60418 1.29605 1.08319 1.90739 1.39432 1.24536 1.86685 1.20542 0.77259 0.86840 0.84595 1.90643 1.50535 1.16862 1.85436 1.48164 1.67187 1.10176 1.07928 1.21961 0.99884 0.79540 1.00972 1.21842 0.96977 1.03311 0.93744 1.21008 1.00320 0.92126 0.95620 1.19618 0.93797 0.97744 0.93481 1.21134 1.22917 0.90579 1.20735 0.90827 1.25026 0.96836 0.94861 0.96790 1.69913 1.38010 1.12125 1.34274 0.86813 0.81203 0.81860 0.79586 1.20399 1.21508 1.19083 1.22060 0.98554 0.98658 0.97745 1.21643 0.97770 0.97795 0.83778 0.92601 0.89616 0.91623 0.87734 0.88465 0.77018 0.76911 0.89773 0.91306 0.89076 0.92298 0.91710 0.96634 0.97136 0.92802 0.91144 0.92114 0.91726 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.65 37.15 0.32 -1.43 16 2 C -0.10 -1.11 1.52 -91.78 -0.14 -1.25 16 3 H 0.10 1.17 6.20 -51.93 -0.32 0.85 16 4 C -0.12 -1.15 4.59 -27.89 -0.13 -1.28 16 5 C 0.52 4.89 7.85 -10.99 -0.09 4.80 16 6 N -0.86 -4.72 8.87 31.22 0.28 -4.44 16 7 O -0.54 -7.15 14.81 5.56 0.08 -7.07 16 8 C 0.52 7.29 6.82 -10.98 -0.07 7.22 16 9 O -0.56 -9.10 15.60 5.55 0.09 -9.01 16 10 N -0.60 -8.51 2.98 -173.03 -0.52 -9.02 16 11 C 0.10 1.35 6.05 -3.94 -0.02 1.32 16 12 C -0.12 -2.04 5.17 -26.84 -0.14 -2.17 16 13 C -0.07 -1.33 2.10 -90.58 -0.19 -1.52 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.52 -14.06 8.94 -34.44 -0.31 -14.37 16 16 H 0.07 2.13 7.30 -52.49 -0.38 1.75 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 19 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 24 C 0.11 1.60 6.42 -3.71 -0.02 1.58 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.06 6.09 -51.93 -0.32 0.74 16 27 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 28 H 0.10 0.92 8.04 -51.93 -0.42 0.50 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.40 1.08 8.83 -40.82 -0.36 0.72 16 31 H 0.40 1.86 8.93 -40.82 -0.36 1.50 16 32 H 0.08 1.02 5.19 -51.93 -0.27 0.75 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.05 8.14 -51.94 -0.42 0.63 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.23 7.03 -51.93 -0.37 0.87 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -33.64 337.39 -6.89 -40.53 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.88 Total: 1.55 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.13 Total: -7.83 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.54 Total: -40.16 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.17 Total: -16.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.64 -6.89 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518775785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.354 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds