Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46901 * 2 1 4 4 C 1.42904 * 114.00095 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47265 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.50651 * 54.91395 * 5 4 3 7 7 C 1.53101 * 109.50289 * 174.99908 * 5 4 3 8 8 N 1.47019 * 109.25443 * 176.82876 * 7 5 4 9 9 C 1.46900 * 110.99856 * 177.60909 * 8 7 5 10 10 C 1.52999 * 109.47058 * 170.00237 * 9 8 7 11 11 H 1.09004 * 109.46798 * 304.99404 * 10 9 8 12 12 C 1.47199 * 109.47499 * 64.99713 * 10 9 8 13 13 N 9.29611 * 122.11173 * 11.88163 * 2 1 3 14 14 C 1.52998 * 109.47057 * 184.99895 * 10 9 8 15 15 C 1.50706 * 109.47348 * 174.99602 * 14 10 9 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 10 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 10 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 C 1.47012 * 110.75370 * 301.38096 * 8 7 5 24 24 C 1.53100 * 109.25503 * 58.61601 * 23 8 7 25 25 O 1.43009 * 109.26202 * 303.15115 * 24 23 8 26 26 H 1.08999 * 109.46479 * 60.00304 * 1 2 3 27 27 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47288 * 300.00719 * 1 2 3 29 29 H 1.08998 * 109.47447 * 239.99808 * 2 1 3 30 30 H 1.08999 * 109.47164 * 119.99391 * 2 1 3 31 31 H 1.09000 * 109.46869 * 59.99150 * 4 3 2 32 32 H 1.09004 * 109.46671 * 299.99977 * 4 3 2 33 33 H 1.08993 * 109.51083 * 56.89453 * 7 5 4 34 34 H 1.08997 * 109.54274 * 296.77869 * 7 5 4 35 35 H 1.08993 * 109.47513 * 49.99769 * 9 8 7 36 36 H 1.09004 * 109.46897 * 289.99666 * 9 8 7 37 37 H 1.09001 * 109.47671 * 54.99810 * 14 10 9 38 38 H 1.08998 * 109.47454 * 294.99808 * 14 10 9 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.51079 * 178.54983 * 23 8 7 41 41 H 1.09006 * 109.50745 * 298.68661 * 23 8 7 42 42 H 1.09007 * 109.50876 * 183.21865 * 24 23 8 43 43 H 1.09002 * 109.54096 * 63.11141 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 3.3482 3.4429 0.8401 7 6 5.3461 3.0617 0.1263 8 7 5.7257 4.4800 0.0487 9 6 7.1747 4.6474 0.2228 10 6 7.5650 6.0890 -0.1091 11 1 7.2161 6.3384 -1.1112 12 6 6.9475 7.0017 0.8668 13 7 6.4716 7.7052 1.6212 14 6 9.0871 6.2320 -0.0489 15 6 9.4797 7.6171 -0.4946 16 1 8.7195 8.3245 -0.7915 17 6 10.8087 7.9830 -0.5183 18 7 11.7340 7.1233 -0.1516 19 14 11.2952 9.7000 -1.0701 20 1 10.0762 10.4689 -1.4278 21 1 12.0105 10.3904 0.0330 22 1 12.1857 9.6055 -2.2548 23 6 5.2759 5.0709 -1.2201 24 6 3.7558 4.9274 -1.3330 25 8 3.4030 3.5458 -1.2241 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.8340 0.9764 -0.8891 32 1 3.8332 0.9768 0.8909 33 1 5.8245 2.5121 -0.6842 34 1 5.6669 2.6511 1.0837 35 1 7.7020 3.9655 -0.4441 36 1 7.4444 4.4266 1.2556 37 1 9.5477 5.4947 -0.7064 38 1 9.4272 6.0694 0.9739 39 1 12.6691 7.3807 -0.1679 40 1 5.5446 6.1270 -1.2453 41 1 5.7531 4.5532 -2.0522 42 1 3.4244 5.3127 -2.2974 43 1 3.2760 5.4898 -0.5320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528720812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -69.563120 kcal Electronic energy + Delta-G solvation = -22166.741170 eV Core-core repulsion = 18826.057477 eV Total energy + Delta-G solvation = -3340.683693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91889 -38.13602 -37.04083 -35.13973 -33.56789 -32.77138 -31.65645 -30.91154 -28.49788 -26.81662 -24.80965 -23.72616 -23.03042 -22.11908 -21.48865 -20.41522 -17.07185 -16.91038 -16.82758 -16.54727 -16.07058 -15.72296 -15.21026 -14.95095 -14.73161 -14.51343 -13.99298 -13.64332 -13.46130 -13.26069 -12.86448 -12.77969 -12.37639 -12.11968 -12.06835 -11.79779 -11.67623 -11.58624 -11.46414 -11.24340 -11.13296 -11.09471 -10.69207 -10.62084 -10.52097 -10.17204 -9.84450 -9.66872 -9.58151 -9.23434 -8.49968 -8.31348 -6.13539 -4.16957 3.25934 3.26721 3.34411 3.38812 3.62396 3.65990 3.74313 3.93842 4.37889 4.73264 4.75568 4.81244 4.83540 4.93442 4.98780 5.00762 5.08361 5.13772 5.19136 5.24731 5.31239 5.36553 5.42035 5.51060 5.55762 5.62042 5.66547 5.78012 5.83040 5.83621 5.93183 6.00647 6.31037 6.41068 6.92610 6.97838 7.01486 7.16239 7.37066 7.47168 7.81433 8.18206 8.50136 8.87729 9.48883 10.97358 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.002921 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.513190 B = 9583.872413 C = 9754.385628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.072 3.928 5 C 0.097 3.903 6 H 0.074 0.926 7 C 0.028 3.972 8 N -0.538 5.538 9 C 0.063 3.937 10 C 0.003 3.997 11 H 0.103 0.897 12 C 0.251 3.749 13 N -0.473 5.473 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.007 3.993 24 C 0.065 3.935 25 O -0.375 6.375 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.027 0.973 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 -15.279 -2.314 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.005 4.005 5 C 0.038 3.962 6 H 0.092 0.908 7 C -0.101 4.101 8 N -0.263 5.263 9 C -0.065 4.065 10 C -0.019 4.019 11 H 0.121 0.879 12 C -0.066 4.066 13 N -0.150 5.150 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.120 4.120 24 C -0.012 4.012 25 O -0.294 6.294 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.317 -13.927 -0.914 22.241 hybrid contribution 1.473 0.201 -1.008 1.796 sum -15.844 -13.726 -1.922 21.050 Atomic orbital electron populations 1.21734 0.93768 1.02083 1.03250 1.22456 0.95674 0.83941 0.99943 1.87953 1.20528 1.26097 1.95390 1.22438 0.81972 0.95152 1.00908 1.22059 0.93089 0.92460 0.88564 0.90800 1.22641 0.95227 0.89863 1.02370 1.62274 1.15709 1.14315 1.34020 1.22291 0.85591 0.96017 1.02618 1.19390 0.99800 0.88388 0.94336 0.87909 1.28836 0.91245 0.92957 0.93564 1.80997 1.11938 1.10961 1.11080 1.19181 0.84408 0.98313 0.98805 1.21158 0.92298 0.97851 1.45132 0.92456 1.24957 0.96627 0.97346 0.95069 1.69946 1.00712 1.34781 1.47517 0.86526 0.78662 0.84467 0.78384 1.19663 1.20931 1.20832 1.22967 0.96389 1.01893 0.90801 1.22676 0.93620 0.82557 1.02345 1.88009 1.79306 1.24134 1.37936 0.91760 0.91216 0.91872 0.93430 0.93522 0.92466 0.91724 0.93520 0.89452 0.92592 0.89793 0.94426 0.95451 0.92809 0.88665 0.93305 0.88374 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.35 10.31 -39.68 -0.41 -4.76 16 4 C 0.07 0.72 5.61 37.16 0.21 0.93 16 5 C 0.10 1.13 3.08 -26.68 -0.08 1.05 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.03 0.31 4.91 -3.71 -0.02 0.29 16 8 N -0.54 -7.32 4.58 -234.30 -1.07 -8.39 16 9 C 0.06 0.92 4.64 -3.82 -0.02 0.91 16 10 C 0.00 0.05 1.73 -93.41 -0.16 -0.11 16 11 H 0.10 1.73 5.95 -51.93 -0.31 1.42 16 12 C 0.25 5.16 13.30 -20.76 -0.28 4.88 16 13 N -0.47 -10.60 18.54 42.15 0.78 -9.82 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.01 0.10 4.92 -3.71 -0.02 0.08 16 24 C 0.06 0.79 7.01 37.21 0.26 1.05 16 25 O -0.38 -5.01 10.44 -39.68 -0.41 -5.43 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.10 1.28 5.68 -51.93 -0.29 0.99 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -31.18 354.52 -7.37 -38.55 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -7.32 Total: -4.23 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.01 Total: -2.84 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.44 Total: -42.76 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.82 Total: -10.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.18 -7.37 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528720812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.011 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds