Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46851 * 2 1 4 4 C 1.42905 * 113.99589 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46936 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.50581 * 55.08418 * 5 4 3 7 7 C 1.53095 * 109.54430 * 175.19284 * 5 4 3 8 8 N 1.47008 * 109.26089 * 176.80806 * 7 5 4 9 9 C 1.46898 * 111.00043 * 177.60872 * 8 7 5 10 10 C 1.52993 * 109.47465 * 287.54839 * 9 8 7 11 11 H 1.08998 * 109.46957 * 54.92821 * 10 9 8 12 12 C 1.47202 * 109.47258 * 294.93315 * 10 9 8 13 13 N 8.56069 * 125.20773 * 27.02414 * 2 1 3 14 14 C 1.52996 * 109.47758 * 174.92983 * 10 9 8 15 15 C 1.50698 * 109.47600 * 185.00160 * 14 10 9 16 16 H 1.07999 * 119.99671 * 359.97438 * 15 14 10 17 17 C 1.37878 * 120.00135 * 179.97438 * 15 14 10 18 18 N 1.31509 * 119.99818 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47149 * 60.00180 * 19 17 15 21 21 H 1.48504 * 109.47078 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47581 * 300.00150 * 19 17 15 23 23 C 1.47020 * 110.75075 * 301.38094 * 8 7 5 24 24 C 1.53096 * 109.25553 * 58.62079 * 23 8 7 25 25 O 1.43019 * 109.50781 * 295.00249 * 5 4 3 26 26 H 1.09008 * 109.47057 * 59.99850 * 1 2 3 27 27 H 1.08997 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46970 * 300.00675 * 1 2 3 29 29 H 1.08998 * 109.47487 * 240.00085 * 2 1 3 30 30 H 1.09000 * 109.47314 * 119.99589 * 2 1 3 31 31 H 1.08997 * 109.46993 * 60.00090 * 4 3 2 32 32 H 1.08995 * 109.47207 * 299.99828 * 4 3 2 33 33 H 1.09010 * 109.50454 * 56.87119 * 7 5 4 34 34 H 1.09000 * 109.50650 * 296.74589 * 7 5 4 35 35 H 1.09007 * 109.46928 * 167.54641 * 9 8 7 36 36 H 1.09009 * 109.47182 * 47.55103 * 9 8 7 37 37 H 1.09007 * 109.47027 * 305.00201 * 14 10 9 38 38 H 1.08999 * 109.46980 * 64.99723 * 14 10 9 39 39 H 0.97004 * 120.00211 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.50206 * 178.55064 * 23 8 7 41 41 H 1.08992 * 109.50769 * 298.64122 * 23 8 7 42 42 H 1.09002 * 109.50951 * 63.08349 * 24 23 8 43 43 H 1.08995 * 109.50872 * 183.17289 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 -0.0012 6 1 3.3514 3.4419 0.8413 7 6 5.3466 3.0626 0.1191 8 7 5.7250 4.4810 0.0410 9 6 7.1746 4.6491 0.2093 10 6 7.5509 4.3979 1.6708 11 1 7.1879 3.4164 1.9759 12 6 6.9390 5.4329 2.5200 13 7 6.4656 6.2309 3.1781 14 6 9.0726 4.4483 1.8217 15 6 9.4499 4.0802 3.2335 16 1 8.6813 3.8352 3.9514 17 6 10.7765 4.0562 3.6085 18 7 11.7125 4.3540 2.7341 19 14 11.2442 3.6005 5.3587 20 1 10.7616 2.2285 5.6587 21 1 12.7212 3.6482 5.5047 22 1 10.6215 4.5619 6.3038 23 6 5.2696 5.0726 -1.2255 24 6 3.7492 4.9284 -1.3323 25 8 3.3976 3.5464 -1.2230 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8333 0.9768 -0.8908 32 1 3.8341 0.9765 0.8891 33 1 5.8220 2.5137 -0.6939 34 1 5.6708 2.6515 1.0751 35 1 7.4574 5.6643 -0.0693 36 1 7.6994 3.9378 -0.4285 37 1 9.5301 3.7431 1.1277 38 1 9.4262 5.4556 1.6020 39 1 12.6458 4.3375 2.9980 40 1 5.5377 6.1288 -1.2509 41 1 5.7443 4.5564 -2.0599 42 1 3.2729 5.4898 -0.5284 43 1 3.4136 5.3149 -2.2945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528720820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -73.797448 kcal Electronic energy + Delta-G solvation = -22265.386744 eV Core-core repulsion = 18924.519437 eV Total energy + Delta-G solvation = -3340.867307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87061 -38.03146 -36.95011 -35.13750 -33.55056 -32.72587 -31.71862 -30.91344 -28.42618 -26.53720 -25.35998 -23.19745 -22.96881 -22.05214 -21.70175 -20.41242 -17.16377 -16.82992 -16.71349 -16.49710 -16.09736 -15.68201 -15.19343 -14.93747 -14.73400 -14.54368 -13.92879 -13.61064 -13.43663 -13.23357 -12.81218 -12.74301 -12.36841 -12.18315 -11.99030 -11.76940 -11.65974 -11.49760 -11.36650 -11.26254 -11.10523 -11.07162 -10.69502 -10.64270 -10.51994 -10.20045 -9.79880 -9.73005 -9.51512 -9.24074 -8.48191 -8.33811 -6.12151 -4.15560 3.29270 3.31800 3.33762 3.37621 3.62402 3.69501 3.80544 3.93703 4.39098 4.78216 4.80692 4.83562 4.86448 4.93844 5.01298 5.04530 5.13486 5.15083 5.21726 5.25975 5.33727 5.39674 5.45674 5.51260 5.60489 5.67208 5.67791 5.75806 5.81184 5.87293 5.92126 5.98791 6.29864 6.44239 6.96177 6.98536 7.02582 7.16090 7.38604 7.49140 7.82728 8.20130 8.56369 8.88906 9.50058 10.98703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.003559 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.289623 B = 7865.677593 C = 8690.084640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.072 3.928 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.023 3.977 8 N -0.539 5.539 9 C 0.063 3.937 10 C 0.012 3.988 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.018 3.982 24 C 0.065 3.935 25 O -0.375 6.375 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 -7.384 -10.676 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.005 4.005 5 C 0.039 3.961 6 H 0.093 0.907 7 C -0.105 4.105 8 N -0.264 5.264 9 C -0.066 4.066 10 C -0.010 4.010 11 H 0.117 0.883 12 C -0.062 4.062 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.111 4.111 24 C -0.012 4.012 25 O -0.294 6.294 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.224 -5.851 -9.469 20.508 hybrid contribution 1.417 -1.027 0.294 1.774 sum -15.807 -6.878 -9.174 19.528 Atomic orbital electron populations 1.21733 0.93819 1.02064 1.03189 1.22458 0.95614 0.83951 1.00016 1.87943 1.20564 1.26111 1.95414 1.22446 0.81929 0.95065 1.01100 1.22084 0.93157 0.92527 0.88372 0.90735 1.22734 0.95045 0.89761 1.02962 1.62194 1.15680 1.14722 1.33778 1.22278 0.85556 1.02573 0.96159 1.19218 0.99373 0.93243 0.89156 0.88345 1.28906 0.91008 0.93565 0.92676 1.81054 1.12114 1.11611 1.10793 1.19168 0.84598 0.98731 0.98176 1.21094 0.92192 1.47359 0.95902 0.92544 1.24948 0.96559 0.95008 0.97404 1.69924 1.00459 1.48329 1.34317 0.86650 0.77317 0.79172 0.84923 1.20049 1.21180 1.20187 1.22795 0.96586 1.00896 0.90780 1.22639 0.93474 0.82909 1.02187 1.88010 1.79141 1.23851 1.38413 0.91842 0.91228 0.91860 0.93452 0.93412 0.92465 0.91451 0.93395 0.88789 0.90008 0.92444 0.94470 0.95554 0.92712 0.89553 0.93784 0.92344 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.60 10.31 -39.95 -0.41 -5.02 16 4 C 0.07 0.77 5.61 37.16 0.21 0.98 16 5 C 0.10 1.19 3.08 -26.68 -0.08 1.11 16 6 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.02 0.28 4.75 -3.72 -0.02 0.27 16 8 N -0.54 -7.27 4.38 -234.31 -1.03 -8.29 16 9 C 0.06 0.91 4.34 -3.83 -0.02 0.90 16 10 C 0.01 0.22 2.23 -93.41 -0.21 0.01 16 11 H 0.10 1.67 6.57 -51.93 -0.34 1.33 16 12 C 0.26 5.31 13.68 -20.71 -0.28 5.02 16 13 N -0.48 -10.86 18.55 42.22 0.78 -10.07 16 14 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 15 C -0.53 -13.89 8.60 -34.44 -0.30 -14.18 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.02 0.20 5.62 -3.71 -0.02 0.18 16 24 C 0.06 0.73 7.01 37.21 0.26 0.99 16 25 O -0.38 -4.96 10.44 -39.95 -0.42 -5.37 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.09 1.12 6.56 -51.93 -0.34 0.78 16 35 H 0.08 1.19 7.92 -51.92 -0.41 0.78 16 36 H 0.06 0.77 8.05 -51.92 -0.42 0.36 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.28 356.58 -7.41 -38.69 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.38 Total: -4.34 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.05 Total: -2.52 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.49 Total: -42.94 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.83 Total: -10.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.28 -7.41 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528720820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.106 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds