Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47369 * 2 1 4 4 C 1.42896 * 114.00457 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47403 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.50596 * 304.91150 * 5 4 3 7 7 C 1.53102 * 109.50516 * 184.78572 * 5 4 3 8 8 N 1.47013 * 109.25631 * 183.21717 * 7 5 4 9 9 C 1.46897 * 111.00270 * 182.39135 * 8 7 5 10 10 C 1.53000 * 109.47478 * 170.22742 * 9 8 7 11 11 H 1.09004 * 109.46772 * 56.27824 * 10 9 8 12 12 C 1.47195 * 109.46903 * 296.27916 * 10 9 8 13 13 N 8.93155 * 123.03127 * 340.09664 * 2 1 3 14 14 C 1.53000 * 109.47207 * 176.27737 * 10 9 8 15 15 C 1.50700 * 109.47118 * 185.00213 * 14 10 9 16 16 H 1.08000 * 119.99829 * 359.97438 * 15 14 10 17 17 C 1.37874 * 120.00147 * 179.97438 * 15 14 10 18 18 N 1.31512 * 119.99800 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47193 * 59.99989 * 19 17 15 21 21 H 1.48507 * 109.47310 * 300.00003 * 19 17 15 22 22 H 1.48506 * 109.47248 * 180.02562 * 19 17 15 23 23 C 1.47013 * 110.75643 * 58.61027 * 8 7 5 24 24 C 1.53102 * 109.25939 * 301.39123 * 23 8 7 25 25 O 1.43008 * 109.26318 * 56.84120 * 24 23 8 26 26 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46953 * 300.00261 * 1 2 3 28 28 H 1.09005 * 109.47027 * 60.00410 * 1 2 3 29 29 H 1.08999 * 109.47669 * 239.99845 * 2 1 3 30 30 H 1.09005 * 109.47027 * 119.99590 * 2 1 3 31 31 H 1.09002 * 109.47217 * 59.99338 * 4 3 2 32 32 H 1.09004 * 109.47147 * 300.00381 * 4 3 2 33 33 H 1.08992 * 109.50815 * 63.28126 * 7 5 4 34 34 H 1.08999 * 109.50502 * 303.14850 * 7 5 4 35 35 H 1.09004 * 109.47032 * 50.22601 * 9 8 7 36 36 H 1.09006 * 109.46951 * 290.22753 * 9 8 7 37 37 H 1.08998 * 109.47211 * 64.99844 * 14 10 9 38 38 H 1.09002 * 109.47150 * 304.99919 * 14 10 9 39 39 H 0.97006 * 120.00368 * 359.97438 * 18 17 15 40 40 H 1.09003 * 109.50413 * 61.32076 * 23 8 7 41 41 H 1.08999 * 109.51233 * 181.40715 * 23 8 7 42 42 H 1.08996 * 109.50813 * 176.78079 * 24 23 8 43 43 H 1.09004 * 109.50076 * 296.86663 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3515 3.4412 -0.8431 7 6 5.3468 3.0614 -0.1199 8 7 5.7261 4.4796 -0.0425 9 6 7.1759 4.6468 -0.2104 10 6 7.5031 6.1330 -0.3681 11 1 7.1167 6.6832 0.4900 12 6 6.8803 6.6445 -1.5998 13 7 6.3985 7.0407 -2.5492 14 6 9.0200 6.3154 -0.4499 15 6 9.3481 7.7859 -0.4815 16 1 8.5542 8.5172 -0.4472 17 6 10.6620 8.1977 -0.5543 18 7 11.6287 7.3071 -0.5966 19 14 11.0687 10.0203 -0.5943 20 1 10.5573 10.6688 0.6400 21 1 10.4310 10.6439 -1.7817 22 1 12.5410 10.1974 -0.6735 23 6 5.2705 5.0725 1.2233 24 6 3.7499 4.9292 1.3296 25 8 3.3975 3.5475 1.2210 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8341 0.9764 -0.8891 32 1 3.8333 0.9767 0.8908 33 1 5.6711 2.6495 -1.0754 34 1 5.8214 2.5128 0.6936 35 1 7.5035 4.1064 -1.0985 36 1 7.6909 4.2523 0.6656 37 1 9.3948 5.8399 -1.3562 38 1 9.4885 5.8573 0.4212 39 1 11.4175 6.3605 -0.5762 40 1 5.7440 4.5560 2.0583 41 1 5.5399 6.1284 1.2486 42 1 3.4143 5.3159 2.2918 43 1 3.2744 5.4910 0.5256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528720821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -76.389547 kcal Electronic energy + Delta-G solvation = -22161.361761 eV Core-core repulsion = 18820.382052 eV Total energy + Delta-G solvation = -3340.979709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94059 -38.14631 -37.07191 -35.22306 -33.84622 -32.81389 -31.67404 -30.96044 -28.43812 -26.54420 -24.73984 -23.57511 -23.05353 -22.25812 -21.72898 -20.48246 -17.25187 -17.12457 -16.90301 -16.59958 -16.22960 -15.76607 -15.25640 -14.92741 -14.86025 -14.16693 -13.75936 -13.69176 -13.50940 -13.37359 -13.33224 -12.81772 -12.29197 -12.19110 -12.14443 -11.83762 -11.72231 -11.61321 -11.51917 -11.33798 -11.18174 -11.05822 -10.74390 -10.62419 -10.33618 -10.16133 -9.94261 -9.87118 -9.67117 -8.70026 -8.44997 -8.39954 -6.46151 -4.17549 3.22342 3.41012 3.44040 3.57222 3.61353 3.62981 3.71809 3.86910 4.48484 4.68487 4.72606 4.76395 4.78048 4.88051 4.92618 4.96912 5.05549 5.09210 5.12897 5.25153 5.30886 5.32601 5.38351 5.45179 5.51754 5.57312 5.60440 5.72078 5.74713 5.81216 5.84683 5.92609 6.17400 6.29128 6.86915 6.91719 6.94082 7.04858 7.10622 7.20056 7.99690 8.31880 8.49233 8.76095 9.53585 10.94562 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.002902 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.890739 B = 9645.410489 C = 9717.340127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.073 3.927 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.028 3.972 8 N -0.538 5.538 9 C 0.062 3.938 10 C 0.018 3.982 11 H 0.101 0.899 12 C 0.254 3.746 13 N -0.473 5.473 14 C 0.018 3.982 15 C -0.606 4.606 16 H 0.051 0.949 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 1.066 2.934 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.281 1.281 23 C 0.011 3.989 24 C 0.065 3.935 25 O -0.375 6.375 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.017 0.983 38 H 0.028 0.972 39 H 0.269 0.731 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.618 -14.692 5.257 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.004 4.004 5 C 0.038 3.962 6 H 0.093 0.907 7 C -0.101 4.101 8 N -0.263 5.263 9 C -0.066 4.066 10 C -0.004 4.004 11 H 0.119 0.881 12 C -0.063 4.063 13 N -0.150 5.150 14 C -0.020 4.020 15 C -0.644 4.644 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.544 5.544 19 Si 0.894 3.106 20 H -0.212 1.212 21 H -0.214 1.214 22 H -0.207 1.207 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.293 6.293 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.550 -12.710 3.507 21.160 hybrid contribution -0.259 -1.700 0.886 1.935 sum -16.809 -14.410 4.393 22.572 Atomic orbital electron populations 1.21734 0.93729 1.02106 1.03263 1.22460 0.95706 0.83908 0.99945 1.87952 1.20462 1.26136 1.95386 1.22431 0.82039 0.95084 1.00895 1.22066 0.92954 0.92505 0.88641 0.90733 1.22631 0.95328 0.89789 1.02303 1.62192 1.15392 1.14364 1.34358 1.22277 0.85927 0.96447 1.01967 1.19062 0.98719 0.93085 0.89516 0.88107 1.28735 0.91273 0.92113 0.94174 1.80987 1.11857 1.10063 1.12106 1.19285 0.86410 0.98835 0.97512 1.21948 0.95014 0.91068 1.56377 0.93094 1.25798 0.92531 1.06654 0.93417 1.70811 1.34581 1.02910 1.46054 0.83577 0.76265 0.74080 0.76704 1.21240 1.21417 1.20668 1.22908 0.96503 1.01721 0.90518 1.22664 0.93495 0.82641 1.02412 1.88011 1.79078 1.24045 1.38206 0.91192 0.91760 0.91847 0.93509 0.93435 0.91733 0.92481 0.89482 0.93591 0.90036 0.92682 0.96465 0.95412 0.92074 0.93514 0.88826 0.88322 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.37 10.31 -39.95 -0.41 -4.79 16 4 C 0.07 0.73 5.60 37.16 0.21 0.94 16 5 C 0.10 1.14 3.09 -26.68 -0.08 1.06 16 6 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 8 N -0.54 -7.28 4.39 -234.31 -1.03 -8.31 16 9 C 0.06 0.91 4.33 -3.83 -0.02 0.89 16 10 C 0.02 0.33 2.12 -93.41 -0.20 0.13 16 11 H 0.10 1.75 6.35 -51.93 -0.33 1.42 16 12 C 0.25 5.33 13.64 -20.76 -0.28 5.04 16 13 N -0.47 -10.79 18.54 42.15 0.78 -10.01 16 14 C 0.02 0.41 3.74 -27.88 -0.10 0.31 16 15 C -0.61 -16.19 8.60 -34.44 -0.30 -16.49 16 16 H 0.05 1.37 7.59 -52.49 -0.40 0.97 16 17 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 18 N -0.91 -26.54 13.65 55.43 0.76 -25.79 16 19 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 24 C 0.06 0.76 7.01 37.21 0.26 1.02 16 25 O -0.37 -4.94 10.43 -39.95 -0.42 -5.36 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 36 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 38 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16 39 H 0.27 7.69 7.22 -40.82 -0.29 7.39 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.16 6.30 -51.93 -0.33 0.83 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -32.11 354.87 -7.38 -39.49 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -7.31 Total: -4.20 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.02 Total: -6.18 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.51 Total: -44.10 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.83 Total: -10.14 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.11 -7.38 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528720821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.896 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds