Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47369 * 2 1 4 4 C 1.42896 * 114.00457 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47403 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.50596 * 304.91150 * 5 4 3 7 7 C 1.53102 * 109.50516 * 184.78572 * 5 4 3 8 8 N 1.47013 * 109.25631 * 183.21717 * 7 5 4 9 9 C 1.46897 * 111.00270 * 182.39135 * 8 7 5 10 10 C 1.53000 * 109.47478 * 170.22742 * 9 8 7 11 11 H 1.09004 * 109.46772 * 56.27824 * 10 9 8 12 12 C 1.47195 * 109.46903 * 296.27916 * 10 9 8 13 13 N 8.93155 * 123.03127 * 340.09664 * 2 1 3 14 14 C 1.53000 * 109.47207 * 176.27737 * 10 9 8 15 15 C 1.50700 * 109.47118 * 185.00213 * 14 10 9 16 16 H 1.08000 * 119.99829 * 359.97438 * 15 14 10 17 17 C 1.37874 * 120.00147 * 179.97438 * 15 14 10 18 18 N 1.31512 * 119.99800 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47193 * 59.99989 * 19 17 15 21 21 H 1.48507 * 109.47310 * 300.00003 * 19 17 15 22 22 H 1.48506 * 109.47248 * 180.02562 * 19 17 15 23 23 C 1.47013 * 110.75643 * 58.61027 * 8 7 5 24 24 C 1.53102 * 109.25939 * 301.39123 * 23 8 7 25 25 O 1.43008 * 109.26318 * 56.84120 * 24 23 8 26 26 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46953 * 300.00261 * 1 2 3 28 28 H 1.09005 * 109.47027 * 60.00410 * 1 2 3 29 29 H 1.08999 * 109.47669 * 239.99845 * 2 1 3 30 30 H 1.09005 * 109.47027 * 119.99590 * 2 1 3 31 31 H 1.09002 * 109.47217 * 59.99338 * 4 3 2 32 32 H 1.09004 * 109.47147 * 300.00381 * 4 3 2 33 33 H 1.08992 * 109.50815 * 63.28126 * 7 5 4 34 34 H 1.08999 * 109.50502 * 303.14850 * 7 5 4 35 35 H 1.09004 * 109.47032 * 50.22601 * 9 8 7 36 36 H 1.09006 * 109.46951 * 290.22753 * 9 8 7 37 37 H 1.08998 * 109.47211 * 64.99844 * 14 10 9 38 38 H 1.09002 * 109.47150 * 304.99919 * 14 10 9 39 39 H 0.97006 * 120.00368 * 359.97438 * 18 17 15 40 40 H 1.09003 * 109.50413 * 61.32076 * 23 8 7 41 41 H 1.08999 * 109.51233 * 181.40715 * 23 8 7 42 42 H 1.08996 * 109.50813 * 176.78079 * 24 23 8 43 43 H 1.09004 * 109.50076 * 296.86663 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3515 3.4412 -0.8431 7 6 5.3468 3.0614 -0.1199 8 7 5.7261 4.4796 -0.0425 9 6 7.1759 4.6468 -0.2104 10 6 7.5031 6.1330 -0.3681 11 1 7.1167 6.6832 0.4900 12 6 6.8803 6.6445 -1.5998 13 7 6.3985 7.0407 -2.5492 14 6 9.0200 6.3154 -0.4499 15 6 9.3481 7.7859 -0.4815 16 1 8.5542 8.5172 -0.4472 17 6 10.6620 8.1977 -0.5543 18 7 11.6287 7.3071 -0.5966 19 14 11.0687 10.0203 -0.5943 20 1 10.5573 10.6688 0.6400 21 1 10.4310 10.6439 -1.7817 22 1 12.5410 10.1974 -0.6735 23 6 5.2705 5.0725 1.2233 24 6 3.7499 4.9292 1.3296 25 8 3.3975 3.5475 1.2210 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8341 0.9764 -0.8891 32 1 3.8333 0.9767 0.8908 33 1 5.6711 2.6495 -1.0754 34 1 5.8214 2.5128 0.6936 35 1 7.5035 4.1064 -1.0985 36 1 7.6909 4.2523 0.6656 37 1 9.3948 5.8399 -1.3562 38 1 9.4885 5.8573 0.4212 39 1 11.4175 6.3605 -0.5762 40 1 5.7440 4.5560 2.0583 41 1 5.5399 6.1284 1.2486 42 1 3.4143 5.3159 2.2918 43 1 3.2744 5.4910 0.5256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528720821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -97.597919 kcal Electronic energy + Delta-G solvation = -22162.281425 eV Core-core repulsion = 18820.382052 eV Total energy + Delta-G solvation = -3341.899373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91259 -39.04239 -38.37728 -36.58797 -35.71837 -33.69947 -33.25176 -31.68540 -29.61440 -27.90199 -26.02176 -24.72745 -24.02119 -23.66174 -22.88071 -21.42827 -19.10015 -18.36533 -17.76375 -17.66866 -17.32582 -16.54772 -16.20223 -16.05611 -15.96269 -15.66495 -15.31910 -15.02956 -14.75038 -14.49001 -14.16523 -14.00432 -13.85992 -13.44305 -13.36566 -13.17556 -12.98098 -12.70852 -12.66113 -12.45100 -12.36235 -12.25461 -12.04354 -11.96413 -11.86991 -11.63399 -11.48406 -10.78916 -10.58449 -10.56249 -10.52630 -9.41996 -8.63924 -6.35124 1.53928 1.60018 1.79037 1.95531 2.03355 2.42344 2.56762 2.69649 2.93642 3.16953 3.24829 3.82535 3.88442 3.93674 4.01722 4.09624 4.16336 4.18658 4.27420 4.36254 4.42465 4.47715 4.50336 4.50828 4.57926 4.60480 4.63070 4.78552 4.81875 4.87333 4.93718 4.99391 5.04010 5.18734 5.26561 5.36178 5.82246 5.91472 5.98308 6.13824 6.20566 6.28848 6.62261 6.80629 7.42213 8.78251 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.002902 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.890739 B = 9645.410489 C = 9717.340127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.074 3.926 5 C 0.096 3.904 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.554 5.554 9 C 0.073 3.927 10 C 0.028 3.972 11 H 0.116 0.884 12 C 0.264 3.736 13 N -0.509 5.509 14 C 0.022 3.978 15 C -0.615 4.615 16 H 0.045 0.955 17 C -0.030 4.030 18 N -0.935 5.935 19 Si 1.104 2.896 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.012 3.988 24 C 0.066 3.934 25 O -0.389 6.389 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.073 0.927 37 H -0.001 1.001 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.210 -15.495 6.167 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.003 4.003 5 C 0.038 3.962 6 H 0.074 0.926 7 C -0.096 4.096 8 N -0.279 5.279 9 C -0.055 4.055 10 C 0.006 3.994 11 H 0.133 0.867 12 C -0.052 4.052 13 N -0.186 5.186 14 C -0.017 4.017 15 C -0.653 4.653 16 H 0.063 0.937 17 C -0.229 4.229 18 N -0.572 5.572 19 Si 0.927 3.073 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.116 4.116 24 C -0.011 4.011 25 O -0.308 6.308 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.017 0.983 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.167 -13.530 4.426 22.301 hybrid contribution -0.136 -1.483 0.596 1.604 sum -17.303 -15.013 5.022 23.452 Atomic orbital electron populations 1.21766 0.93186 1.03343 1.02462 1.22674 0.96247 0.82731 1.01020 1.87913 1.21219 1.28170 1.95619 1.22476 0.81721 0.93870 1.02217 1.22121 0.93038 0.93496 0.87566 0.92620 1.22645 0.95043 0.88586 1.03350 1.62121 1.14435 1.15998 1.35350 1.22094 0.87108 0.93397 1.02921 1.19045 0.95543 0.96048 0.88773 0.86682 1.29259 0.90582 0.91161 0.94238 1.80986 1.13012 1.11384 1.13239 1.19147 0.89404 0.96455 0.96659 1.22353 0.94749 0.93099 1.55082 0.93662 1.27041 0.93071 1.09736 0.93031 1.70913 1.35180 1.02837 1.48296 0.83070 0.76061 0.70396 0.77735 1.18872 1.20987 1.20833 1.22931 0.96803 1.01565 0.90288 1.22732 0.93141 0.82139 1.03105 1.88000 1.79403 1.24594 1.38767 0.88948 0.92649 0.92533 0.92170 0.92526 0.89733 0.91700 0.88471 0.92355 0.89880 0.90886 0.98293 0.94941 0.92859 0.92566 0.89113 0.86301 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -8.97 10.31 -144.47 -1.49 -10.46 16 4 C 0.07 1.35 5.60 71.98 0.40 1.76 16 5 C 0.10 2.15 3.09 30.63 0.09 2.24 16 6 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 7 C 0.03 0.66 4.93 86.32 0.43 1.08 16 8 N -0.55 -13.98 4.39 -895.21 -3.93 -17.91 16 9 C 0.07 2.00 4.33 86.30 0.37 2.37 16 10 C 0.03 0.98 2.12 -12.60 -0.03 0.95 16 11 H 0.12 3.78 6.35 -2.38 -0.02 3.77 16 12 C 0.26 10.89 13.64 89.44 1.22 12.11 16 13 N -0.51 -23.08 18.54 20.00 0.37 -22.71 16 14 C 0.02 0.99 3.74 29.85 0.11 1.10 16 15 C -0.61 -32.56 8.60 25.60 0.22 -32.34 16 16 H 0.05 2.40 7.59 -2.91 -0.02 2.38 16 17 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 18 N -0.93 -54.79 13.65 21.45 0.29 -54.49 16 19 Si 1.10 49.45 29.90 68.60 2.05 51.50 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 C 0.01 0.27 5.44 86.32 0.47 0.74 16 24 C 0.07 1.45 7.01 72.02 0.50 1.96 16 25 O -0.39 -9.75 10.43 -144.47 -1.51 -11.26 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 2.25 8.04 -2.38 -0.02 2.23 16 36 H 0.07 1.75 8.12 -2.38 -0.02 1.74 16 37 H 0.00 -0.06 8.01 -2.39 -0.02 -0.08 16 38 H 0.03 1.44 8.01 -2.39 -0.02 1.42 16 39 H 0.26 15.11 7.22 -92.70 -0.67 14.44 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 2.09 6.30 -2.39 -0.02 2.07 16 42 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -68.11 354.87 2.33 -65.77 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.07 Total: 8.75 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.48 Total: -9.20 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.27 Total: -95.11 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -3.00 Total: -21.72 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Total: -68.11 2.33 -65.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528720821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.824 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds