Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46910 * 2 1 4 4 C 1.34776 * 120.00130 * 270.00135 * 3 2 1 5 5 O 1.21586 * 120.00187 * 180.02562 * 4 3 2 6 6 N 1.34783 * 119.99561 * 359.97438 * 4 3 2 7 7 C 1.46506 * 119.99750 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.01750 * 326.39888 * 7 6 4 9 9 C 1.54273 * 110.02797 * 87.83687 * 7 6 4 10 10 C 1.54895 * 104.19342 * 95.67339 * 9 7 6 11 11 C 1.54889 * 102.74535 * 37.94346 * 10 9 7 12 12 H 1.08995 * 110.49012 * 80.73276 * 11 10 9 13 13 C 1.50698 * 110.59552 * 203.32199 * 11 10 9 14 14 H 1.08004 * 120.00157 * 114.84654 * 13 11 10 15 15 C 1.37877 * 120.00216 * 294.83744 * 13 11 10 16 16 N 1.31517 * 120.00265 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99811 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.47146 * 89.99389 * 17 15 13 19 19 H 1.48500 * 109.46893 * 209.99723 * 17 15 13 20 20 H 1.48497 * 109.46798 * 329.99462 * 17 15 13 21 21 C 1.53875 * 110.03376 * 205.00402 * 7 6 4 22 22 C 1.46500 * 120.00084 * 89.99810 * 3 2 1 23 23 C 1.54037 * 113.81484 * 141.49095 * 22 3 2 24 24 O 1.44453 * 85.42226 * 91.81090 * 23 22 3 25 25 C 1.44175 * 93.38118 * 24.08939 * 24 23 22 26 26 H 1.08994 * 109.47433 * 299.99926 * 1 2 3 27 27 H 1.09002 * 109.47181 * 60.00441 * 1 2 3 28 28 H 1.09005 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47179 * 239.99863 * 2 1 3 30 30 H 1.09002 * 109.47181 * 119.99559 * 2 1 3 31 31 H 0.96993 * 120.00548 * 0.02562 * 6 4 3 32 32 H 1.08995 * 110.48450 * 214.35412 * 9 7 6 33 33 H 1.08998 * 110.48513 * 337.00048 * 9 7 6 34 34 H 1.08993 * 110.75554 * 279.62685 * 10 9 7 35 35 H 1.08993 * 110.90929 * 156.32624 * 10 9 7 36 36 H 0.96997 * 119.99905 * 179.97438 * 16 15 13 37 37 H 1.08995 * 110.02811 * 0.02562 * 21 7 6 38 38 H 1.09002 * 110.02975 * 121.43427 * 21 7 6 39 39 H 1.09002 * 112.99830 * 9.66750 * 22 3 2 40 40 H 1.08996 * 113.86647 * 205.91512 * 23 22 3 41 41 H 1.09000 * 113.86636 * 337.62461 * 23 22 3 42 42 H 1.09000 * 113.86303 * 221.77269 * 25 24 23 43 43 H 1.08997 * 113.86880 * 90.06111 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6486 3.1628 -1.1672 6 7 2.0187 1.3810 -2.3344 7 6 2.2623 2.0718 -3.6032 8 1 2.0355 3.1330 -3.4998 9 6 3.7319 1.8840 -4.0334 10 6 3.6915 0.6805 -5.0077 11 6 2.3699 0.9116 -5.7817 12 1 2.5150 1.6460 -6.5738 13 6 1.8569 -0.3848 -6.3537 14 1 0.9240 -0.7991 -6.0008 15 6 2.5784 -1.0420 -7.3277 16 7 2.1309 -2.1736 -7.8265 17 14 4.1921 -0.3256 -7.9377 18 1 5.3093 -0.8460 -7.1092 19 1 4.4028 -0.7164 -9.3548 20 1 4.1469 1.1550 -7.8340 21 6 1.3963 1.4536 -4.7147 22 6 2.2624 2.0719 1.2687 23 6 3.5116 2.9730 1.2560 24 8 2.6070 4.0243 0.8521 25 6 1.4578 3.3752 1.4323 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6955 0.4665 -2.3344 32 1 4.0970 2.7755 -4.5432 33 1 4.3559 1.6547 -3.1697 34 1 3.6580 -0.2603 -4.4583 35 1 4.5446 0.7001 -5.6857 36 1 2.6383 -2.6357 -8.5120 37 1 0.7946 0.6399 -4.3101 38 1 0.7499 2.2149 -5.1514 39 1 2.2067 1.4089 2.1321 40 1 3.9548 3.1264 2.2399 41 1 4.2431 2.7022 0.4946 42 1 0.5639 3.4225 0.8105 43 1 1.2724 3.6516 2.4702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556772781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = -28.514538 kcal Electronic energy + Delta-G solvation = -23571.140202 eV Core-core repulsion = 20232.236509 eV Total energy + Delta-G solvation = -3338.903693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12725 -39.07208 -37.24437 -35.65016 -33.41301 -31.96547 -30.77259 -28.73784 -28.28773 -27.18149 -26.50698 -23.77631 -23.33657 -21.91189 -19.90917 -19.52572 -18.82375 -17.74101 -17.01334 -16.53128 -16.01829 -15.57709 -15.36475 -15.09102 -14.88239 -14.45244 -13.98484 -13.74806 -13.70688 -12.98504 -12.81746 -12.70071 -12.49893 -12.29672 -12.02946 -11.54034 -11.41923 -11.35588 -11.12837 -10.90255 -10.56384 -10.51865 -10.15614 -9.90928 -9.79439 -9.67958 -9.45046 -9.35372 -9.01214 -8.79269 -8.54438 -8.44103 -6.08273 -4.06974 2.62155 3.29427 3.38694 3.39084 3.41514 3.66810 4.10449 4.26137 4.42536 4.69859 4.86011 5.04391 5.08943 5.14826 5.15939 5.21026 5.38644 5.41122 5.49500 5.61337 5.62177 5.66556 5.69448 5.96999 5.99871 6.16419 6.20682 6.33022 6.33909 6.46894 6.50257 6.57837 6.60823 6.75344 6.88538 6.98445 7.13242 7.20189 7.52896 7.77362 8.18658 8.51083 8.89169 8.94686 9.55349 11.04852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028185 B = 0.004390 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.182184 B = 6376.193961 C = 6884.354685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.620 5.620 4 C 0.693 3.307 5 O -0.556 6.556 6 N -0.731 5.731 7 C 0.158 3.842 8 H 0.080 0.920 9 C -0.132 4.132 10 C -0.127 4.127 11 C 0.011 3.989 12 H 0.034 0.966 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.264 1.264 21 C -0.112 4.112 22 C 0.102 3.898 23 C 0.032 3.968 24 O -0.338 6.338 25 C 0.017 3.983 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 4.950 19.743 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.358 5.358 4 C 0.394 3.606 5 O -0.430 6.430 6 N -0.388 5.388 7 C 0.054 3.946 8 H 0.098 0.902 9 C -0.171 4.171 10 C -0.165 4.165 11 C -0.008 4.008 12 H 0.052 0.948 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.542 5.542 17 Si 0.709 3.291 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.189 1.189 21 C -0.150 4.150 22 C -0.004 4.004 23 C -0.046 4.046 24 O -0.255 6.255 25 C -0.062 4.062 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.357 5.911 19.414 20.298 hybrid contribution 0.680 -0.560 -0.273 0.923 sum 0.323 5.351 19.141 19.878 Atomic orbital electron populations 1.22248 0.95735 1.02501 1.02706 1.21557 0.94634 0.82251 1.03305 1.46967 1.70926 1.13997 1.03917 1.16086 0.79317 0.84850 0.80330 1.91064 1.50963 1.15551 1.85467 1.45671 1.71293 1.17363 1.04466 1.21587 0.95353 0.96332 0.81376 0.90205 1.22770 0.95891 0.99344 0.99048 1.22907 0.99492 0.96750 0.97323 1.19982 0.90785 0.96982 0.93072 0.94818 1.21052 1.08322 1.04579 1.20727 0.90935 1.24989 0.97607 0.94570 0.95875 1.69903 1.39229 1.16343 1.28709 0.86900 0.84476 0.80293 0.77427 1.20461 1.22197 1.18870 1.22417 0.98031 0.99372 0.95152 1.23552 0.96004 0.94647 0.86196 1.24174 0.94481 0.86187 0.99779 1.89994 1.17421 1.43460 1.74657 1.24322 0.92883 0.90628 0.98398 0.92447 0.92002 0.91269 0.90177 0.90292 0.76962 0.91833 0.92627 0.91725 0.93686 0.92731 0.91455 0.92268 0.88684 0.90387 0.89119 0.89692 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.11 0.94 5.92 -4.04 -0.02 0.92 16 3 N -0.62 -7.31 2.73 -179.35 -0.49 -7.80 16 4 C 0.69 10.85 7.77 -86.91 -0.68 10.17 16 5 O -0.56 -10.63 11.82 -19.49 -0.23 -10.86 16 6 N -0.73 -11.29 4.90 -57.57 -0.28 -11.57 16 7 C 0.16 2.76 3.25 -66.80 -0.22 2.55 16 8 H 0.08 1.46 7.56 -51.93 -0.39 1.06 16 9 C -0.13 -2.40 6.54 -25.07 -0.16 -2.57 16 10 C -0.13 -2.65 5.31 -24.74 -0.13 -2.79 16 11 C 0.01 0.24 2.27 -90.11 -0.20 0.04 16 12 H 0.03 0.79 7.06 -51.93 -0.37 0.42 16 13 C -0.51 -13.74 9.05 -34.44 -0.31 -14.05 16 14 H 0.07 2.10 7.79 -52.48 -0.41 1.69 16 15 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 16 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 17 Si 0.88 21.62 24.65 -169.99 -4.19 17.43 16 18 H -0.28 -6.70 7.10 56.52 0.40 -6.30 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.25 6.47 56.52 0.37 -5.88 16 21 C -0.11 -2.11 6.13 -25.61 -0.16 -2.27 16 22 C 0.10 1.04 4.75 -66.85 -0.32 0.72 16 23 C 0.03 0.38 8.15 37.64 0.31 0.69 16 24 O -0.34 -5.19 9.78 -60.01 -0.59 -5.78 16 25 C 0.02 0.19 8.62 37.64 0.32 0.51 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 30 H 0.08 0.53 7.96 -51.93 -0.41 0.12 16 31 H 0.39 5.54 6.05 -40.82 -0.25 5.29 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 35 H 0.04 0.97 5.27 -51.93 -0.27 0.70 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 0.65 7.97 -51.93 -0.41 0.23 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -32.89 332.06 -8.28 -41.17 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.99 Total: 4.01 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.29 Total: -5.23 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.00 Total: -45.75 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.82 Total: -16.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.19 Total: 17.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.89 -8.28 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556772781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.658 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds