Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47059 * 2 1 4 4 C 1.34774 * 119.99544 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00472 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.47294 * 180.02562 * 6 4 3 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62981 * 359.71541 * 9 7 6 11 11 C 1.53621 * 108.54522 * 126.37007 * 10 9 7 12 12 C 1.53046 * 109.23781 * 54.85477 * 11 10 9 13 13 C 1.53005 * 109.45541 * 178.48956 * 12 11 10 14 14 C 1.50697 * 109.47508 * 295.06864 * 13 12 11 15 15 H 1.07998 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99548 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00252 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47155 * 120.00140 * 18 16 14 21 21 H 1.48502 * 109.47235 * 239.99845 * 18 16 14 22 22 C 1.53036 * 109.53723 * 298.50904 * 12 11 10 23 23 C 1.46929 * 120.63006 * 179.97438 * 9 7 6 24 24 H 1.09004 * 109.46832 * 299.99894 * 1 2 3 25 25 H 1.09001 * 109.47420 * 59.99456 * 1 2 3 26 26 H 1.09002 * 109.47451 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46524 * 240.00106 * 2 1 3 28 28 H 1.08992 * 109.46876 * 120.00439 * 2 1 3 29 29 H 0.96994 * 120.00700 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.46953 * 299.99667 * 6 4 3 31 31 H 1.09000 * 109.47318 * 59.99264 * 6 4 3 32 32 H 1.08999 * 109.58555 * 246.20421 * 10 9 7 33 33 H 1.09004 * 109.59037 * 6.62627 * 10 9 7 34 34 H 1.08998 * 109.63687 * 294.86823 * 11 10 9 35 35 H 1.09002 * 109.43660 * 174.72243 * 11 10 9 36 36 H 1.08992 * 109.44939 * 58.52847 * 12 11 10 37 37 H 1.09001 * 109.47134 * 55.07124 * 13 12 11 38 38 H 1.09007 * 109.46932 * 175.06814 * 13 12 11 39 39 H 0.96998 * 119.99631 * 179.97438 * 17 16 14 40 40 H 1.08990 * 109.50176 * 301.41338 * 22 12 11 41 41 H 1.09002 * 109.51817 * 181.33372 * 22 12 11 42 42 H 1.08998 * 109.58397 * 353.36559 * 23 9 7 43 43 H 1.08997 * 109.58397 * 113.65247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8459 3.0482 0.0001 7 6 5.3529 3.0481 -0.0013 8 8 5.9592 1.9978 -0.0022 9 7 6.0268 4.2153 -0.0006 10 6 5.3063 5.4957 -0.0047 11 6 5.8154 6.3466 1.1687 12 6 7.3368 6.4815 1.0710 13 6 7.8451 7.3595 2.2162 14 6 7.3080 8.7581 2.0536 15 1 6.6677 8.9968 1.2174 16 6 7.6340 9.7330 2.9725 17 7 8.4133 9.4422 3.9912 18 14 6.9688 11.4668 2.7705 19 1 6.1219 11.5333 1.5525 20 1 6.1545 11.8261 3.9592 21 1 8.1006 12.4192 2.6396 22 6 7.9805 5.0964 1.1659 23 6 7.4960 4.2314 -0.0013 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3881 2.1185 0.0004 30 1 3.4822 3.5625 -0.8895 31 1 3.4829 3.5616 0.8904 32 1 5.4914 6.0161 -0.9444 33 1 4.2377 5.3141 0.1105 34 1 5.5526 5.8658 2.1109 35 1 5.3589 7.3354 1.1246 36 1 7.6000 6.9398 0.1177 37 1 7.5063 6.9485 3.1672 38 1 8.9348 7.3845 2.1988 39 1 8.6430 10.1281 4.6374 40 1 7.6974 4.6274 2.1081 41 1 9.0651 5.1950 1.1201 42 1 7.8726 3.2153 0.1161 43 1 7.8563 4.6482 -0.9418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565018046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -91.036510 kcal Electronic energy + Delta-G solvation = -22281.250953 eV Core-core repulsion = 18939.636104 eV Total energy + Delta-G solvation = -3341.614849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44156 -39.14506 -37.15786 -35.35656 -33.98366 -32.39302 -31.66335 -30.79767 -29.45756 -27.86990 -24.67691 -23.41714 -22.82310 -21.91750 -20.89321 -19.75811 -18.58113 -17.55806 -16.54128 -16.30520 -16.16569 -15.89255 -15.29184 -15.19009 -14.55258 -14.14521 -13.81798 -13.63730 -13.50798 -13.08380 -12.99081 -12.73984 -12.71413 -12.25659 -12.17857 -12.11716 -11.78944 -11.69331 -11.20851 -10.98095 -10.82637 -10.70888 -10.48656 -10.16313 -10.01142 -9.66918 -9.30506 -9.26561 -9.25528 -8.97330 -8.38233 -8.28992 -6.02186 -4.04365 2.54654 2.74211 2.84314 3.27714 3.35858 3.37220 3.38215 4.38703 4.42730 4.57251 4.73969 4.75854 4.98209 5.00670 5.04370 5.18561 5.32658 5.41763 5.46689 5.48167 5.55100 5.57027 5.67029 5.69343 5.76913 6.00467 6.10153 6.22434 6.38564 6.38901 6.52541 6.70461 6.96084 6.98443 7.09592 7.27785 7.60584 7.65521 7.80041 7.97874 8.12892 8.39830 8.41640 9.02571 9.59542 11.09108 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003141 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.725887 B = 8912.052022 C = 9611.316344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.511 3.489 5 O -0.493 6.493 6 C -0.165 4.165 7 C 0.513 3.487 8 O -0.507 6.507 9 N -0.609 5.609 10 C 0.102 3.898 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.027 3.973 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.129 4.129 23 C 0.114 3.886 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.399 0.601 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.409 -12.475 -9.259 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.395 5.395 4 C 0.295 3.705 5 O -0.364 6.364 6 C -0.208 4.208 7 C 0.298 3.702 8 O -0.381 6.381 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.167 4.167 23 C -0.008 4.008 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.232 0.768 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.391 -13.693 -9.109 21.854 hybrid contribution -0.747 1.670 0.077 1.831 sum -15.138 -12.023 -9.033 21.338 Atomic orbital electron populations 1.22005 0.94485 1.03191 1.02511 1.21252 0.94054 0.83102 1.02422 1.46054 1.06986 1.08825 1.77607 1.20105 0.82200 0.90988 0.77181 1.90861 1.54403 1.45517 1.45657 1.21636 0.96006 0.96665 1.06485 1.19858 0.88797 0.83812 0.77684 1.90821 1.69243 1.30236 1.47833 1.48165 1.07314 1.05645 1.73297 1.22033 0.95664 0.84031 1.00305 1.21983 0.97667 0.99752 0.96327 1.21185 0.93494 0.93825 1.01413 1.19135 0.96256 0.93381 0.92267 1.21269 1.29886 0.94746 1.09472 0.92547 1.25037 0.95294 0.98820 0.95410 1.69979 1.36383 1.33595 1.13476 0.86589 0.78782 0.84981 0.77943 1.19765 1.21125 1.21098 1.22016 1.00536 0.96649 0.97542 1.21626 0.78666 1.01548 0.98927 0.91923 0.91996 0.90858 0.91625 0.91573 0.76754 0.86283 0.86025 0.91446 0.90677 0.92252 0.89738 0.92345 0.96646 0.96583 0.93092 0.92096 0.91161 0.89689 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.03 37.16 0.37 -0.38 16 2 C 0.12 0.90 6.39 -4.04 -0.03 0.88 16 3 N -0.74 -6.10 5.56 -60.30 -0.33 -6.44 16 4 C 0.51 6.34 7.82 -10.98 -0.09 6.25 16 5 O -0.49 -8.83 14.18 -18.96 -0.27 -9.10 16 6 C -0.17 -1.69 4.53 -29.03 -0.13 -1.82 16 7 C 0.51 7.81 7.69 -10.99 -0.08 7.73 16 8 O -0.51 -10.07 13.59 -18.96 -0.26 -10.33 16 9 N -0.61 -8.79 2.97 -172.53 -0.51 -9.30 16 10 C 0.10 1.27 6.37 -3.49 -0.02 1.25 16 11 C -0.12 -1.94 5.21 -26.38 -0.14 -2.08 16 12 C -0.08 -1.52 2.10 -90.57 -0.19 -1.71 16 13 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 14 C -0.52 -13.71 8.39 -34.44 -0.29 -14.00 16 15 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C -0.13 -2.19 5.36 -26.63 -0.14 -2.33 16 23 C 0.11 1.75 6.43 -3.73 -0.02 1.73 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 1.94 8.47 -40.82 -0.35 1.60 16 30 H 0.12 0.83 7.93 -51.93 -0.41 0.41 16 31 H 0.12 0.96 7.70 -51.93 -0.40 0.56 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.69 5.93 -51.93 -0.31 0.38 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -35.65 345.82 -8.62 -44.27 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.19 Total: -2.04 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.98 Total: -2.54 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.11 Total: -41.37 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.53 Total: -19.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.65 -8.62 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565018046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.765 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds