Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47059 * 2 1 4 4 C 1.34774 * 119.99544 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00472 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.47294 * 180.02562 * 6 4 3 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62981 * 359.71541 * 9 7 6 11 11 C 1.53621 * 108.54522 * 126.37007 * 10 9 7 12 12 C 1.53046 * 109.23781 * 54.85477 * 11 10 9 13 13 C 1.53005 * 109.45541 * 178.48956 * 12 11 10 14 14 C 1.50697 * 109.47508 * 295.06864 * 13 12 11 15 15 H 1.07998 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99548 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00252 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47155 * 120.00140 * 18 16 14 21 21 H 1.48502 * 109.47235 * 239.99845 * 18 16 14 22 22 C 1.53036 * 109.53723 * 298.50904 * 12 11 10 23 23 C 1.46929 * 120.63006 * 179.97438 * 9 7 6 24 24 H 1.09004 * 109.46832 * 299.99894 * 1 2 3 25 25 H 1.09001 * 109.47420 * 59.99456 * 1 2 3 26 26 H 1.09002 * 109.47451 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46524 * 240.00106 * 2 1 3 28 28 H 1.08992 * 109.46876 * 120.00439 * 2 1 3 29 29 H 0.96994 * 120.00700 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.46953 * 299.99667 * 6 4 3 31 31 H 1.09000 * 109.47318 * 59.99264 * 6 4 3 32 32 H 1.08999 * 109.58555 * 246.20421 * 10 9 7 33 33 H 1.09004 * 109.59037 * 6.62627 * 10 9 7 34 34 H 1.08998 * 109.63687 * 294.86823 * 11 10 9 35 35 H 1.09002 * 109.43660 * 174.72243 * 11 10 9 36 36 H 1.08992 * 109.44939 * 58.52847 * 12 11 10 37 37 H 1.09001 * 109.47134 * 55.07124 * 13 12 11 38 38 H 1.09007 * 109.46932 * 175.06814 * 13 12 11 39 39 H 0.96998 * 119.99631 * 179.97438 * 17 16 14 40 40 H 1.08990 * 109.50176 * 301.41338 * 22 12 11 41 41 H 1.09002 * 109.51817 * 181.33372 * 22 12 11 42 42 H 1.08998 * 109.58397 * 353.36559 * 23 9 7 43 43 H 1.08997 * 109.58397 * 113.65247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8459 3.0482 0.0001 7 6 5.3529 3.0481 -0.0013 8 8 5.9592 1.9978 -0.0022 9 7 6.0268 4.2153 -0.0006 10 6 5.3063 5.4957 -0.0047 11 6 5.8154 6.3466 1.1687 12 6 7.3368 6.4815 1.0710 13 6 7.8451 7.3595 2.2162 14 6 7.3080 8.7581 2.0536 15 1 6.6677 8.9968 1.2174 16 6 7.6340 9.7330 2.9725 17 7 8.4133 9.4422 3.9912 18 14 6.9688 11.4668 2.7705 19 1 6.1219 11.5333 1.5525 20 1 6.1545 11.8261 3.9592 21 1 8.1006 12.4192 2.6396 22 6 7.9805 5.0964 1.1659 23 6 7.4960 4.2314 -0.0013 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3881 2.1185 0.0004 30 1 3.4822 3.5625 -0.8895 31 1 3.4829 3.5616 0.8904 32 1 5.4914 6.0161 -0.9444 33 1 4.2377 5.3141 0.1105 34 1 5.5526 5.8658 2.1109 35 1 5.3589 7.3354 1.1246 36 1 7.6000 6.9398 0.1177 37 1 7.5063 6.9485 3.1672 38 1 8.9348 7.3845 2.1988 39 1 8.6430 10.1281 4.6374 40 1 7.6974 4.6274 2.1081 41 1 9.0651 5.1950 1.1201 42 1 7.8726 3.2153 0.1161 43 1 7.8563 4.6482 -0.9418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565018046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -115.236825 kcal Electronic energy + Delta-G solvation = -22282.300357 eV Core-core repulsion = 18939.636104 eV Total energy + Delta-G solvation = -3342.664253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51561 -40.20665 -38.48463 -36.19307 -35.62244 -34.06419 -32.78895 -31.82223 -30.37617 -29.50137 -26.31242 -24.31603 -23.98841 -23.30375 -21.93918 -21.08814 -19.80108 -18.56799 -18.36639 -17.45939 -17.06484 -16.91427 -16.48830 -16.28267 -16.05706 -15.24908 -15.03008 -14.94923 -14.54537 -14.47296 -14.22787 -14.11817 -13.81040 -13.36793 -13.24563 -12.97471 -12.92514 -12.66512 -12.65708 -12.49771 -12.31400 -12.27250 -12.08876 -11.70599 -11.35948 -11.18464 -10.87595 -10.81225 -10.50662 -10.44936 -10.04729 -9.53077 -8.13994 -6.23712 1.43565 1.44590 1.56820 1.63160 1.74862 1.84790 2.44992 2.46158 3.20131 3.44014 3.83872 4.00130 4.07779 4.14923 4.20906 4.23308 4.26862 4.37295 4.39199 4.46929 4.54758 4.63319 4.73672 4.86922 4.93208 4.98174 5.00210 5.08631 5.15067 5.29294 5.34732 5.36812 5.45976 5.52517 5.58383 5.65713 5.85673 5.92482 6.31060 6.48599 6.63278 6.94062 7.23460 7.40686 7.45402 8.98406 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003141 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.725887 B = 8912.052022 C = 9611.316344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.505 3.495 5 O -0.560 6.560 6 C -0.155 4.155 7 C 0.504 3.496 8 O -0.562 6.562 9 N -0.609 5.609 10 C 0.109 3.891 11 C -0.116 4.116 12 C -0.074 4.074 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.940 5.940 18 Si 0.962 3.038 19 H -0.253 1.253 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.121 4.121 23 C 0.120 3.880 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.419 0.581 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.064 0.936 37 H -0.017 1.017 38 H -0.019 1.019 39 H 0.260 0.740 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.842 -11.020 -11.142 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.374 5.374 4 C 0.290 3.710 5 O -0.437 6.437 6 C -0.197 4.197 7 C 0.292 3.708 8 O -0.440 6.440 9 N -0.343 5.343 10 C -0.012 4.012 11 C -0.154 4.154 12 C -0.092 4.092 13 C -0.006 4.006 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.582 5.582 18 Si 0.787 3.213 19 H -0.176 1.176 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.160 4.160 23 C -0.003 4.003 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.257 0.743 30 H 0.183 0.817 31 H 0.173 0.827 32 H 0.105 0.895 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.001 0.999 38 H 0.000 1.000 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.904 -12.194 -11.012 24.300 hybrid contribution 0.355 1.192 0.708 1.431 sum -17.549 -11.002 -10.303 23.133 Atomic orbital electron populations 1.21942 0.91489 1.04101 1.03544 1.21324 0.96376 0.82684 1.00963 1.45913 1.06123 1.09802 1.75532 1.20585 0.82868 0.91340 0.76193 1.90849 1.56285 1.47496 1.49024 1.21710 0.91951 0.95932 1.10108 1.20735 0.90905 0.82892 0.76220 1.90812 1.70808 1.32195 1.50178 1.48277 1.06815 1.06517 1.72735 1.22162 0.97740 0.82235 0.99080 1.21891 0.95199 1.00425 0.97872 1.21043 0.95877 0.93396 0.98894 1.19043 0.94128 0.94271 0.93196 1.21705 1.29381 0.95390 1.09486 0.91028 1.26018 0.95649 1.03607 0.95118 1.70138 1.38217 1.35112 1.14700 0.85435 0.78124 0.79154 0.78555 1.17634 1.20917 1.21236 1.21891 1.00359 0.95972 0.97733 1.21460 0.80014 1.00220 0.98579 0.90989 0.90722 0.90114 0.93009 0.93362 0.74310 0.81702 0.82699 0.89463 0.86047 0.93485 0.90155 0.91773 0.99851 1.00013 0.93156 0.93897 0.91541 0.91123 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.03 71.98 0.72 -0.29 16 2 C 0.11 1.61 6.39 86.38 0.55 2.16 16 3 N -0.72 -10.04 5.56 -463.07 -2.57 -12.61 16 4 C 0.50 11.65 7.82 87.66 0.69 12.33 16 5 O -0.56 -20.45 14.18 20.42 0.29 -20.16 16 6 C -0.16 -2.57 4.53 29.10 0.13 -2.44 16 7 C 0.50 14.46 7.69 87.66 0.67 15.13 16 8 O -0.56 -22.65 13.59 20.40 0.28 -22.37 16 9 N -0.61 -16.15 2.97 -818.15 -2.43 -18.57 16 10 C 0.11 2.24 6.37 86.51 0.55 2.79 16 11 C -0.12 -3.52 5.21 30.82 0.16 -3.36 16 12 C -0.07 -2.75 2.10 -10.76 -0.02 -2.78 16 13 C 0.03 1.56 4.45 29.85 0.13 1.69 16 14 C -0.52 -27.73 8.39 25.60 0.21 -27.51 16 15 H 0.07 3.52 7.05 -2.91 -0.02 3.50 16 16 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 17 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 18 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.12 -4.19 5.36 30.66 0.16 -4.02 16 23 C 0.12 3.59 6.43 86.35 0.55 4.15 16 24 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.07 0.33 8.14 -2.39 -0.02 0.32 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.42 2.33 8.47 -92.71 -0.79 1.55 16 30 H 0.17 1.24 7.93 -2.39 -0.02 1.22 16 31 H 0.16 1.59 7.70 -2.39 -0.02 1.57 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.42 5.93 -2.38 -0.01 1.41 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.53 6.91 -2.39 -0.02 2.52 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.35 7.00 -2.39 -0.02 2.33 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -83.71 345.82 3.07 -80.64 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.21 Total: 7.17 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.98 Total: -2.09 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.71 Total: -87.77 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: 0.57 Total: -42.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -83.71 3.07 -80.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565018046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.593 kcal (2) G-P(sol) polarization free energy of solvation -83.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds