Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47478 * 2 1 4 4 C 1.42902 * 114.00024 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84705 * 18.80572 * 4 3 2 6 6 C 1.54053 * 113.60959 * 247.48959 * 4 3 2 7 7 C 1.53781 * 86.98554 * 270.88663 * 6 4 3 8 8 H 1.08997 * 113.61054 * 219.98380 * 7 6 4 9 9 N 1.46890 * 113.61433 * 89.16549 * 7 6 4 10 10 C 1.46903 * 111.00241 * 105.86262 * 9 7 6 11 11 C 1.52997 * 109.47311 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47375 * 55.00046 * 11 10 9 13 13 C 1.47206 * 109.47080 * 295.00010 * 11 10 9 14 14 N 6.96347 * 80.82296 * 359.21362 * 2 1 3 15 15 C 1.52997 * 109.47232 * 174.99912 * 11 10 9 16 16 C 1.50699 * 109.47337 * 184.99945 * 15 11 10 17 17 H 1.08001 * 119.99707 * 359.97438 * 16 15 11 18 18 C 1.37875 * 120.00057 * 180.02562 * 16 15 11 19 19 N 1.31519 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 89.99784 * 20 18 16 22 22 H 1.48511 * 109.46854 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47166 * 329.98995 * 20 18 16 24 24 C 1.53779 * 87.17355 * 334.57319 * 7 6 4 25 25 H 1.09000 * 113.61682 * 270.92470 * 24 7 6 26 26 O 1.42903 * 113.61358 * 140.02473 * 24 7 6 27 27 C 1.42904 * 113.99850 * 150.00240 * 26 24 7 28 28 H 1.08997 * 109.46943 * 60.00156 * 1 2 3 29 29 H 1.08998 * 109.47470 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46850 * 300.00324 * 1 2 3 31 31 H 1.08999 * 109.46850 * 239.99676 * 2 1 3 32 32 H 1.09007 * 109.46928 * 119.99825 * 2 1 3 33 33 H 1.09002 * 113.60810 * 156.38081 * 6 4 3 34 34 H 1.09001 * 113.69495 * 25.40423 * 6 4 3 35 35 H 1.00906 * 110.99915 * 229.81463 * 9 7 6 36 36 H 1.08994 * 109.46766 * 59.99709 * 10 9 7 37 37 H 1.09000 * 109.47050 * 299.99781 * 10 9 7 38 38 H 1.09004 * 109.47346 * 305.00019 * 15 11 10 39 39 H 1.09002 * 109.47196 * 64.99793 * 15 11 10 40 40 H 0.97001 * 119.99777 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46973 * 299.99682 * 27 26 24 42 42 H 1.09001 * 109.47238 * 59.99859 * 27 26 24 43 43 H 1.09000 * 109.46957 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.9281 0.5454 -0.3229 6 6 4.0029 2.0476 1.3048 7 6 3.8392 3.4327 0.6570 8 1 4.6662 4.1119 0.8639 9 7 2.5253 4.0435 0.8982 10 6 2.6226 5.1305 1.8816 11 6 1.2375 5.7402 2.1066 12 1 0.5374 4.9557 2.3938 13 6 0.7751 6.3796 0.8639 14 7 0.4195 6.8737 -0.0943 15 6 1.3156 6.7866 3.2200 16 6 -0.0683 7.2987 3.5261 17 1 -0.9184 6.9164 2.9807 18 6 -0.2489 8.2561 4.5017 19 7 0.7865 8.7220 5.1656 20 14 -1.9644 8.8903 4.8817 21 1 -2.5791 8.0510 5.9412 22 1 -1.8794 10.2967 5.3512 23 1 -2.7983 8.8279 3.6545 24 6 3.9490 2.7250 -0.7039 25 1 4.9726 2.6341 -1.0675 26 8 3.0519 3.2389 -1.6904 27 6 3.5385 3.1332 -3.0299 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.0412 1.7718 1.4894 34 1 3.3620 1.8931 2.1728 35 1 2.1151 4.3712 0.0365 36 1 3.3015 5.8975 1.5093 37 1 3.0024 4.7352 2.8237 38 1 1.7416 6.3335 4.1152 39 1 1.9462 7.6148 2.8967 40 1 0.6593 9.3953 5.8522 41 1 4.4714 3.6894 -3.1225 42 1 3.7151 2.0848 -3.2706 43 1 2.8005 3.5451 -3.7181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565829427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -45.269840 kcal Electronic energy + Delta-G solvation = -22571.790193 eV Core-core repulsion = 19232.159936 eV Total energy + Delta-G solvation = -3339.630257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10690 -37.20223 -37.00166 -35.69920 -34.03935 -32.92302 -31.07592 -30.40267 -27.19351 -26.42612 -24.54701 -23.91760 -22.84730 -22.41138 -21.68650 -19.30528 -17.38413 -16.80582 -16.47500 -16.15708 -15.90239 -15.66048 -15.49121 -14.71693 -14.61736 -14.13889 -13.51305 -13.41975 -13.05715 -12.91074 -12.69148 -12.61144 -12.41742 -12.02921 -11.82441 -11.73520 -11.60445 -11.48819 -11.17050 -11.07779 -10.96004 -10.88473 -10.75422 -10.59779 -10.45905 -10.15584 -9.66920 -9.41474 -9.22003 -9.12961 -8.39357 -8.04546 -6.03590 -4.05994 3.33863 3.37549 3.40189 3.45692 3.72268 3.78322 3.85253 4.23225 4.46678 4.50264 4.67169 4.77289 4.92142 4.96180 4.98068 5.06020 5.21246 5.22248 5.26743 5.32276 5.34488 5.45999 5.53833 5.60182 5.70498 5.77684 5.84925 5.91180 6.07605 6.09944 6.17580 6.29562 6.51459 6.66488 6.99841 7.30391 7.48879 7.51753 7.61774 7.78186 7.92335 8.30871 8.55470 8.98808 9.59027 11.07434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.003824 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.171904 B = 7321.065469 C = 7613.264346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.327 6.327 4 C 0.063 3.937 5 H 0.063 0.937 6 C -0.158 4.158 7 C 0.077 3.923 8 H 0.060 0.940 9 N -0.656 5.656 10 C 0.068 3.932 11 C 0.008 3.992 12 H 0.110 0.890 13 C 0.243 3.757 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.051 3.949 25 H 0.096 0.904 26 O -0.356 6.356 27 C 0.031 3.969 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.354 0.646 36 H 0.031 0.969 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -18.670 -10.432 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.244 6.244 4 C 0.004 3.996 5 H 0.081 0.919 6 C -0.197 4.197 7 C -0.035 4.035 8 H 0.078 0.922 9 N -0.290 5.290 10 C -0.062 4.062 11 C -0.014 4.014 12 H 0.128 0.872 13 C -0.074 4.074 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 H 0.113 0.887 26 O -0.273 6.273 27 C -0.066 4.066 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.176 0.824 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.609 -18.016 -11.256 22.921 hybrid contribution 0.116 0.597 0.036 0.609 sum 8.725 -17.419 -11.219 22.481 Atomic orbital electron populations 1.21698 0.93720 1.01645 1.03615 1.22488 0.95800 0.84705 0.99079 1.88159 1.17747 1.24388 1.94127 1.23498 0.83530 0.96526 0.96075 0.91895 1.23534 1.00829 0.96395 0.98900 1.22778 0.92340 0.95504 0.92835 0.92237 1.60228 1.19842 1.33092 1.15792 1.22132 0.95888 0.91377 0.96788 1.19295 0.95679 0.98685 0.87708 0.87179 1.29250 0.92347 0.92239 0.93569 1.80974 1.09872 1.10878 1.13700 1.19157 0.98140 0.92149 0.91152 1.21171 0.92923 1.22489 1.19584 0.92490 1.24949 0.96829 0.96245 0.95967 1.69946 1.29526 1.29689 1.24048 0.86600 0.84735 0.78115 0.78682 1.20465 1.21225 1.19870 1.24467 0.93240 0.94531 0.88596 0.88658 1.88010 1.42782 1.82041 1.14501 1.22787 0.99614 0.99871 0.84328 0.91929 0.91676 0.91382 0.94340 0.93848 0.89504 0.88856 0.82433 0.95099 0.89386 0.94280 0.95832 0.92886 0.94351 0.94384 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.10 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.33 -4.31 9.39 -50.30 -0.47 -4.78 16 4 C 0.06 0.68 4.33 -25.78 -0.11 0.56 16 5 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 6 C -0.16 -1.63 7.73 -25.77 -0.20 -1.83 16 7 C 0.08 0.94 4.17 -66.91 -0.28 0.66 16 8 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 9 N -0.66 -9.99 5.94 -105.88 -0.63 -10.62 16 10 C 0.07 1.10 4.97 -3.82 -0.02 1.08 16 11 C 0.01 0.16 2.42 -93.41 -0.23 -0.06 16 12 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 13 C 0.24 5.28 12.97 -20.78 -0.27 5.01 16 14 N -0.48 -11.11 18.53 42.12 0.78 -10.33 16 15 C 0.03 0.78 4.42 -27.89 -0.12 0.66 16 16 C -0.52 -14.35 8.60 -34.44 -0.30 -14.64 16 17 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.05 0.56 4.19 -25.92 -0.11 0.45 16 25 H 0.10 0.78 7.87 -51.93 -0.41 0.37 16 26 O -0.36 -4.69 8.97 -50.30 -0.45 -5.14 16 27 C 0.03 0.29 10.85 101.05 1.10 1.39 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.35 6.07 6.45 -39.29 -0.25 5.81 16 36 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -31.81 361.96 -6.97 -38.78 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.35 Total: 0.56 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.01 Total: -5.36 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.89 Total: -46.26 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.92 Total: -9.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.81 -6.97 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.491 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds