Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47478 * 2 1 4 4 C 1.42902 * 114.00024 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84705 * 18.80572 * 4 3 2 6 6 C 1.54053 * 113.60959 * 247.48959 * 4 3 2 7 7 C 1.53781 * 86.98554 * 270.88663 * 6 4 3 8 8 H 1.08997 * 113.61054 * 219.98380 * 7 6 4 9 9 N 1.46890 * 113.61433 * 89.16549 * 7 6 4 10 10 C 1.46903 * 111.00241 * 105.86262 * 9 7 6 11 11 C 1.52997 * 109.47311 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47375 * 55.00046 * 11 10 9 13 13 C 1.47206 * 109.47080 * 295.00010 * 11 10 9 14 14 N 6.96347 * 80.82296 * 359.21362 * 2 1 3 15 15 C 1.52997 * 109.47232 * 174.99912 * 11 10 9 16 16 C 1.50699 * 109.47337 * 184.99945 * 15 11 10 17 17 H 1.08001 * 119.99707 * 359.97438 * 16 15 11 18 18 C 1.37875 * 120.00057 * 180.02562 * 16 15 11 19 19 N 1.31519 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 89.99784 * 20 18 16 22 22 H 1.48511 * 109.46854 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47166 * 329.98995 * 20 18 16 24 24 C 1.53779 * 87.17355 * 334.57319 * 7 6 4 25 25 H 1.09000 * 113.61682 * 270.92470 * 24 7 6 26 26 O 1.42903 * 113.61358 * 140.02473 * 24 7 6 27 27 C 1.42904 * 113.99850 * 150.00240 * 26 24 7 28 28 H 1.08997 * 109.46943 * 60.00156 * 1 2 3 29 29 H 1.08998 * 109.47470 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46850 * 300.00324 * 1 2 3 31 31 H 1.08999 * 109.46850 * 239.99676 * 2 1 3 32 32 H 1.09007 * 109.46928 * 119.99825 * 2 1 3 33 33 H 1.09002 * 113.60810 * 156.38081 * 6 4 3 34 34 H 1.09001 * 113.69495 * 25.40423 * 6 4 3 35 35 H 1.00906 * 110.99915 * 229.81463 * 9 7 6 36 36 H 1.08994 * 109.46766 * 59.99709 * 10 9 7 37 37 H 1.09000 * 109.47050 * 299.99781 * 10 9 7 38 38 H 1.09004 * 109.47346 * 305.00019 * 15 11 10 39 39 H 1.09002 * 109.47196 * 64.99793 * 15 11 10 40 40 H 0.97001 * 119.99777 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46973 * 299.99682 * 27 26 24 42 42 H 1.09001 * 109.47238 * 59.99859 * 27 26 24 43 43 H 1.09000 * 109.46957 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.9281 0.5454 -0.3229 6 6 4.0029 2.0476 1.3048 7 6 3.8392 3.4327 0.6570 8 1 4.6662 4.1119 0.8639 9 7 2.5253 4.0435 0.8982 10 6 2.6226 5.1305 1.8816 11 6 1.2375 5.7402 2.1066 12 1 0.5374 4.9557 2.3938 13 6 0.7751 6.3796 0.8639 14 7 0.4195 6.8737 -0.0943 15 6 1.3156 6.7866 3.2200 16 6 -0.0683 7.2987 3.5261 17 1 -0.9184 6.9164 2.9807 18 6 -0.2489 8.2561 4.5017 19 7 0.7865 8.7220 5.1656 20 14 -1.9644 8.8903 4.8817 21 1 -2.5791 8.0510 5.9412 22 1 -1.8794 10.2967 5.3512 23 1 -2.7983 8.8279 3.6545 24 6 3.9490 2.7250 -0.7039 25 1 4.9726 2.6341 -1.0675 26 8 3.0519 3.2389 -1.6904 27 6 3.5385 3.1332 -3.0299 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.0412 1.7718 1.4894 34 1 3.3620 1.8931 2.1728 35 1 2.1151 4.3712 0.0365 36 1 3.3015 5.8975 1.5093 37 1 3.0024 4.7352 2.8237 38 1 1.7416 6.3335 4.1152 39 1 1.9462 7.6148 2.8967 40 1 0.6593 9.3953 5.8522 41 1 4.4714 3.6894 -3.1225 42 1 3.7151 2.0848 -3.2706 43 1 2.8005 3.5451 -3.7181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565829427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -65.888133 kcal Electronic energy + Delta-G solvation = -22572.684269 eV Core-core repulsion = 19232.159936 eV Total energy + Delta-G solvation = -3340.524333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96130 -38.64359 -37.95862 -36.81487 -35.72013 -34.65248 -32.49928 -31.44106 -28.27071 -27.88460 -25.33547 -25.14175 -23.88029 -23.52728 -23.46889 -20.18239 -18.59904 -18.29071 -18.08164 -17.34585 -16.78783 -16.67202 -16.46881 -16.33669 -15.55429 -15.50368 -14.83935 -14.56756 -14.41950 -14.25227 -13.94431 -13.90623 -13.63383 -13.43721 -13.25490 -13.07400 -12.74295 -12.67462 -12.54565 -12.41218 -12.35083 -12.16401 -12.09002 -11.84498 -11.72684 -11.56304 -11.35170 -11.12928 -10.54115 -10.39657 -10.02356 -9.18710 -8.18850 -6.27030 1.40655 1.41820 1.51789 1.96276 1.99652 2.42129 2.58530 3.07022 3.16005 3.27352 3.28550 3.68998 3.79941 3.92174 4.16522 4.26209 4.27399 4.29902 4.42572 4.47797 4.52052 4.56392 4.59035 4.63553 4.73841 4.82961 4.84814 4.96038 4.98588 5.09597 5.12184 5.24620 5.28648 5.37608 5.47313 5.63592 5.79908 6.12061 6.21647 6.32044 6.50950 6.70757 6.77515 6.87794 7.41279 8.92216 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.003824 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.171904 B = 7321.065469 C = 7613.264346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.058 3.942 5 H 0.089 0.911 6 C -0.147 4.147 7 C 0.059 3.941 8 H 0.067 0.933 9 N -0.660 5.660 10 C 0.081 3.919 11 C 0.020 3.980 12 H 0.117 0.883 13 C 0.251 3.749 14 N -0.505 5.505 15 C 0.041 3.959 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.051 3.949 25 H 0.127 0.873 26 O -0.390 6.390 27 C 0.027 3.973 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.341 0.659 36 H 0.028 0.972 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 -20.281 -10.623 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.279 6.279 4 C -0.001 4.001 5 H 0.107 0.893 6 C -0.185 4.185 7 C -0.052 4.052 8 H 0.085 0.915 9 N -0.293 5.293 10 C -0.049 4.049 11 C -0.002 4.002 12 H 0.135 0.865 13 C -0.065 4.065 14 N -0.183 5.183 15 C 0.002 3.998 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.775 3.225 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.144 0.856 26 O -0.308 6.308 27 C -0.069 4.069 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.047 0.953 37 H 0.121 0.879 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.444 -19.648 -11.446 24.622 hybrid contribution -0.118 1.078 0.066 1.087 sum 9.327 -18.569 -11.380 23.692 Atomic orbital electron populations 1.21713 0.94042 1.02729 1.02071 1.22613 0.95630 0.83936 1.00203 1.88120 1.19387 1.26023 1.94324 1.23646 0.82688 0.97556 0.96194 0.89349 1.23538 1.02285 0.94700 0.97974 1.23010 0.90808 0.96446 0.94922 0.91504 1.60221 1.22060 1.32124 1.14861 1.21968 0.93219 0.91742 0.97991 1.19209 0.98101 0.97438 0.85411 0.86539 1.29639 0.91540 0.91633 0.93645 1.80962 1.10966 1.11643 1.14712 1.18971 0.96070 0.92398 0.92369 1.21544 0.94231 1.22605 1.19417 0.93047 1.25705 1.00315 0.96611 0.96012 1.70036 1.31309 1.30321 1.24650 0.85678 0.80495 0.77806 0.78490 1.19075 1.20797 1.20237 1.24641 0.94466 0.94032 0.87591 0.85598 1.87967 1.44298 1.82505 1.16049 1.22912 0.99983 1.01122 0.82907 0.93229 0.89313 0.93071 0.92907 0.92824 0.86356 0.90575 0.83914 0.95335 0.87920 0.94504 0.98120 0.92671 0.93048 0.92797 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 1.00 6.50 71.98 0.47 1.47 16 3 O -0.36 -9.08 9.39 -134.58 -1.26 -10.34 16 4 C 0.06 1.10 4.33 31.21 0.14 1.24 16 5 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 6 C -0.15 -2.65 7.73 31.21 0.24 -2.41 16 7 C 0.06 1.33 4.17 45.44 0.19 1.52 16 8 H 0.07 1.41 7.88 -2.39 -0.02 1.39 16 9 N -0.66 -19.69 5.94 -488.88 -2.90 -22.59 16 10 C 0.08 2.57 4.97 86.30 0.43 3.00 16 11 C 0.02 0.80 2.42 -12.60 -0.03 0.77 16 12 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 13 C 0.25 11.05 12.97 89.45 1.16 12.21 16 14 N -0.51 -23.79 18.53 20.00 0.37 -23.42 16 15 C 0.04 1.97 4.42 29.85 0.13 2.11 16 16 C -0.54 -29.77 8.60 25.60 0.22 -29.55 16 17 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 18 C 0.01 0.70 5.46 84.65 0.46 1.16 16 19 N -0.92 -54.05 13.29 21.45 0.28 -53.76 16 20 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 C 0.05 1.01 4.19 31.12 0.13 1.14 16 25 H 0.13 1.62 7.87 -2.39 -0.02 1.60 16 26 O -0.39 -9.85 8.97 -134.58 -1.21 -11.06 16 27 C 0.03 0.48 10.85 113.37 1.23 1.71 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.34 11.70 6.45 -89.69 -0.58 11.12 16 36 H 0.03 0.92 8.13 -2.39 -0.02 0.90 16 37 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.34 361.96 3.22 -65.13 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.40 Total: 17.20 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.51 Total: -7.75 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -2.25 Total: -99.77 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -2.47 Total: -21.40 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.34 3.22 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.760 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds