Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46964 * 2 1 4 4 C 1.42900 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.85003 * 18.80496 * 4 3 2 6 6 C 1.53779 * 113.61316 * 247.49845 * 4 3 2 7 7 C 1.53785 * 87.08093 * 220.01549 * 6 4 3 8 8 H 1.09002 * 113.61570 * 270.88522 * 7 6 4 9 9 N 1.46905 * 113.69113 * 139.98964 * 7 6 4 10 10 C 1.46903 * 110.99622 * 105.93557 * 9 7 6 11 11 C 1.53005 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46692 * 55.00129 * 11 10 9 13 13 C 1.47199 * 109.47117 * 295.00638 * 11 10 9 14 14 N 9.05996 * 125.68025 * 359.18160 * 2 1 3 15 15 C 1.52998 * 109.47269 * 175.00022 * 11 10 9 16 16 C 1.50692 * 109.47111 * 185.00322 * 15 11 10 17 17 H 1.08005 * 120.00419 * 359.97438 * 16 15 11 18 18 C 1.37878 * 119.99992 * 180.02562 * 16 15 11 19 19 N 1.31515 * 120.00119 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00257 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47364 * 89.99605 * 20 18 16 22 22 H 1.48500 * 109.47269 * 209.99694 * 20 18 16 23 23 H 1.48500 * 109.46988 * 329.99590 * 20 18 16 24 24 C 1.53781 * 87.08241 * 25.43228 * 7 6 4 25 25 H 1.08998 * 113.61549 * 89.19632 * 24 7 6 26 26 O 1.42897 * 113.61928 * 220.01767 * 24 7 6 27 27 C 1.42894 * 114.00131 * 209.99686 * 26 24 7 28 28 H 1.09005 * 109.47203 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46874 * 300.00149 * 1 2 3 31 31 H 1.09003 * 109.46735 * 240.00473 * 2 1 3 32 32 H 1.08988 * 109.47053 * 120.00014 * 2 1 3 33 33 H 1.09003 * 113.61775 * 105.47426 * 6 4 3 34 34 H 1.08996 * 113.61960 * 334.56152 * 6 4 3 35 35 H 1.00897 * 110.99581 * 341.98671 * 9 7 6 36 36 H 1.09000 * 109.47373 * 299.99883 * 10 9 7 37 37 H 1.08995 * 109.47013 * 60.00530 * 10 9 7 38 38 H 1.08999 * 109.46850 * 305.00634 * 15 11 10 39 39 H 1.08998 * 109.46675 * 64.99882 * 15 11 10 40 40 H 0.96998 * 120.00573 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.46705 * 179.97438 * 27 26 24 42 42 H 1.08991 * 109.47462 * 299.99928 * 27 26 24 43 43 H 1.09004 * 109.46948 * 60.00454 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0029 2.0461 1.3010 7 6 4.9900 2.8313 0.4212 8 1 5.9141 2.2919 0.2134 9 7 5.2233 4.2075 0.8793 10 6 6.5457 4.3366 1.5058 11 6 6.7521 5.7803 1.9685 12 1 5.9308 6.0731 2.6226 13 6 6.7875 6.6707 0.7969 14 7 6.8144 7.3585 -0.1051 15 6 8.0743 5.8876 2.7308 16 6 8.2193 7.2787 3.2916 17 1 7.4461 8.0132 3.1210 18 6 9.3398 7.6144 4.0216 19 7 10.2817 6.7203 4.2290 20 14 9.5194 9.3386 4.7174 21 1 8.9233 9.3885 6.0767 22 1 10.9592 9.6936 4.7950 23 1 8.8183 10.3044 3.8337 24 6 3.9484 2.7253 -0.7052 25 1 3.2308 3.5457 -0.7149 26 8 4.5189 2.4720 -1.9906 27 6 3.7662 3.0138 -3.0776 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.4823 1.3046 1.9401 34 1 3.2994 2.6802 1.8407 35 1 4.4941 4.5075 1.5088 36 1 6.6082 3.6673 2.3639 37 1 7.3176 4.0734 0.7827 38 1 8.0832 5.1643 3.5462 39 1 8.9023 5.6809 2.0528 40 1 11.0702 6.9564 4.7423 41 1 4.2653 2.7790 -4.0178 42 1 2.7661 2.5806 -3.0787 43 1 3.6935 4.0957 -2.9656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565829428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -55.522436 kcal Electronic energy + Delta-G solvation = -21848.587376 eV Core-core repulsion = 18508.512533 eV Total energy + Delta-G solvation = -3340.074843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16764 -37.52173 -37.12309 -35.93026 -34.12987 -33.04531 -31.42479 -30.56492 -27.12566 -26.58146 -24.60827 -23.87371 -23.06472 -22.32156 -21.75187 -20.10318 -17.54652 -17.19895 -16.50589 -16.38007 -16.00135 -15.61870 -15.16575 -14.82973 -14.49478 -14.29445 -13.87093 -13.63068 -13.32075 -13.01628 -12.83578 -12.78380 -12.30878 -12.11106 -11.97675 -11.93151 -11.78685 -11.51867 -11.34978 -11.22744 -11.20101 -11.07085 -10.89074 -10.67169 -10.53356 -10.23999 -10.08786 -9.55745 -9.39693 -9.20144 -8.45581 -8.27158 -6.09302 -4.12385 3.21521 3.29424 3.36478 3.41427 3.77537 3.86696 3.88488 4.24027 4.35946 4.39285 4.47301 4.70447 4.71461 4.77389 4.91202 4.94012 5.05628 5.18141 5.21519 5.28875 5.33364 5.37156 5.41656 5.56393 5.57801 5.59458 5.61697 5.71499 5.78174 5.88276 5.89348 6.03696 6.39579 6.50174 6.90638 7.05556 7.19724 7.42251 7.46564 7.54089 7.86052 8.23576 8.61185 8.92453 9.53086 11.01613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.002991 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.016662 B = 9358.182317 C = 9884.183991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.049 3.951 5 H 0.094 0.906 6 C -0.182 4.182 7 C 0.078 3.922 8 H 0.109 0.891 9 N -0.679 5.679 10 C 0.067 3.933 11 C 0.009 3.991 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.478 5.478 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.077 3.923 25 H 0.098 0.902 26 O -0.374 6.374 27 C 0.032 3.968 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.345 0.655 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 -16.043 -6.933 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.294 6.294 4 C -0.010 4.010 5 H 0.112 0.888 6 C -0.221 4.221 7 C -0.033 4.033 8 H 0.127 0.873 9 N -0.309 5.309 10 C -0.062 4.062 11 C -0.013 4.013 12 H 0.117 0.883 13 C -0.062 4.062 14 N -0.155 5.155 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.017 3.983 25 H 0.116 0.884 26 O -0.292 6.292 27 C -0.064 4.064 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.164 0.836 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.347 -14.729 -8.857 23.720 hybrid contribution -0.057 0.143 1.616 1.623 sum -16.404 -14.586 -7.241 23.114 Atomic orbital electron populations 1.21752 0.93857 1.02172 1.03121 1.22505 0.95499 0.84050 1.00015 1.87935 1.20550 1.26300 1.94599 1.24216 0.81114 0.99141 0.96530 0.88827 1.23958 0.99608 1.01415 0.97157 1.22959 0.97544 0.89224 0.93617 0.87271 1.60309 1.04944 1.20613 1.45070 1.22124 0.90283 0.95732 0.98110 1.19223 1.04150 0.88900 0.89058 0.88320 1.28790 0.91289 0.92819 0.93325 1.80920 1.10701 1.11064 1.12830 1.19163 0.88476 0.98232 0.94823 1.21146 1.05027 0.96816 1.33426 0.92499 1.24955 0.95696 0.97241 0.96105 1.69935 1.09022 1.33968 1.40132 0.86591 0.77347 0.84725 0.79419 1.20486 1.21151 1.19852 1.24305 0.95333 0.95815 0.82826 0.88391 1.87900 1.49966 1.77223 1.14115 1.22770 0.95726 0.98053 0.89880 0.91945 0.91198 0.91804 0.93449 0.93353 0.90173 0.88590 0.83571 0.92986 0.90311 0.94435 0.95520 0.92798 0.89938 0.94206 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.37 -3.98 10.35 -35.23 -0.36 -4.34 16 4 C 0.05 0.49 4.14 -25.92 -0.11 0.39 16 5 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 6 C -0.18 -1.72 7.54 -25.92 -0.20 -1.92 16 7 C 0.08 0.89 3.99 -66.90 -0.27 0.62 16 8 H 0.11 1.28 7.88 -51.93 -0.41 0.87 16 9 N -0.68 -8.82 6.32 -105.86 -0.67 -9.49 16 10 C 0.07 0.98 4.90 -3.82 -0.02 0.96 16 11 C 0.01 0.16 2.35 -93.41 -0.22 -0.06 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.25 5.38 13.66 -20.81 -0.28 5.10 16 14 N -0.48 -11.06 18.53 42.10 0.78 -10.28 16 15 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 16 C -0.53 -14.01 8.60 -34.44 -0.30 -14.30 16 17 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.08 0.90 3.94 -25.92 -0.10 0.80 16 25 H 0.10 1.20 7.87 -51.93 -0.41 0.79 16 26 O -0.37 -4.83 10.71 -35.23 -0.38 -5.21 16 27 C 0.03 0.34 10.85 101.05 1.10 1.43 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.35 8.14 -51.94 -0.42 -0.08 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.91 7.83 -51.93 -0.41 0.50 16 35 H 0.34 3.98 8.21 -39.29 -0.32 3.66 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.22 8.13 -51.93 -0.42 0.79 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -31.38 366.23 -6.80 -38.17 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.41 Total: -1.18 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 0.01 Total: -4.70 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.85 Total: -44.59 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.74 Total: -9.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.38 -6.80 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.351 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds